Contig 004817:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS073E09Sequence616004817 (4)ref|XP_004237706.1|1e-43PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial isofor
JMFS160E04Sequence610004817 (4)ref|XP_009626560.1|5e-38PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial-like i
JMSF047N15Sequence664004817 (4)ref|XP_006356718.1|1e-133PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial-like [730004817 (4)ref|XP_009626560.1|4e-127PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial-like i

Alignment

This contig is upended


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rJMSF047N15-                          AGCATGCATTTATAAACTTATATATATATATATATATACGAAAT
                      ____________________________________________________________
consensus                             AGCATGCATTTATAAACTTATATATATATATATATATACGAAAT
 
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rJMSF047N15-          TTAGATAAAATAGGCGGCCTAGACGGGAACATCTGCAGGGTAATCTTTTGGGTGTCGCAT
                      ____________________________________________________________
consensus             TTAGATAAAATAGGCGGCCTAGACGGGAACATCTGCAGGGTAATCTTTTGGGTGTCGCAT
 
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rJMSF047N15-          AACAATGTCTCTTAACAACCTTTCCTGTTCTTTAAGGTTTGAAGGCACTTTGTCATACAC
                      ____________________________________________________________
consensus             AACAATGTCTCTTAACAACCTTTCCTGTTCTTTAAGGTTTGAAGGCACTTTGTCATACAC
 
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rJMSF047N15-          ATCAGTGAACAACTCTGCAAGTGAAGGTTTCTCCATCTTCTCTGCTTCTTGAATTGCCTG
                      ____________________________________________________________
consensus             ATCAGTGAACAACTCTGCAAGTGAAGGTTTCTCCATCTTCTCTGCTTCTTGAATTGCCTG
 
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rJMSF047N15-          TAACACCTGTTTTCTTATATTTCCACGAAGTTGATGTTCGTGGTCGTCGCTCCACCATCC
                      ____________________________________________________________
consensus             TAACACCTGTTTTCTTATATTTCCACGAAGTTGATGTTCGTGGTCGTCGCTCCACCATCC
 
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rJMSF047N15-          ATGCCTCTGTATCCATTTTCTGAACCTGGCCACGGGGCTTCTCGCCGTCTTCCAGTGCTC
                      ____________________________________________________________
consensus             ATGCCTCTGTATCCATTTTCTGAACCTGGCCACGGGGCTTCTCGCCGTCTTCCAGTGCTC
 
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rJMSF047N15-          TATTTCTTCTGTGGGGCGGTACTTGGTGGAATCATCGGATGTAGAGTGGTGAGACACGCG
JMSF047N15+                       GGGGCGGTACTTGGTGGAATCATCGGATGTAGAGTGGTGAGACACGCG
                      ____________________________________________________________
consensus             TATTTCTTCTGTGGGGCGGTACTTGGTGGAATCATCGGATGTAGAGTGGTGAGACACGCG
 
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rJMSF047N15-          ATAAGTCATGGCCTCGACAAGTATTGGTTTTTGTTGCTTGATTGCCATTTCGCGAGCCAC
JMSF047N15+           ATAAGTCATGGCCTCGACAAGTATTGGTTTTTGTTGCTTGATTGCCATTTCGCGAGCCAC
                      ____________________________________________________________
consensus             ATAAGTCATGGCCTCGACAAGTATTGGTTTTTGTTGCTTGATTGCCATTTCGCGAGCCAC
 
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rJMSF047N15-          ACGGATGGCGTTGAAAACTGCGAGAGCGTCATTGCCGTCTACTCGGATGCTGGTGATTCC
JMSF047N15+           ACGGATGGCGTTGAAAACTGCGAGAGCGTCATTGCCGTCTACTCGGATGCTGGTGATTCC
                      ____________________________________________________________
consensus             ACGGATGGCGTTGAAAACTGCGAGAGCGTCATTGCCGTCTACTCGGATGCTGGTGATTCC
 
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rJMSF047N15-          ATAACCTTGCCCTTTAGTCACAATTCCATCACTTCGGAATTGTTCTGAAACAGGGGTGCT
JMSF047N15+           ATAACCTTGCCCTTTAGTCACAATTCCATCACTTCGGAATTGTTCTGAAACAGGGGTGCT
                      ____________________________________________________________
consensus             ATAACCTTGCCCTTTAGTCACAATTCCATCACTTCGGAATTGTTCTGAAACAGGGGTGCT
 
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rJMSF047N15-          AATGGCCCATCCATTGTTGCGGCAAATGAACACCACTGGAGCTTCCATTACAGCTGCAAA
JMSF047N15+           AATGGCCCATCCATTGTTGCGGCAAATGAACACCACTGGAGCTTCCATTACAGCTGCAAA
                      ____________________________________________________________
consensus             AATGGCCCATCCATTGTTGCGGCAAATGAACACCACTGGAGCTTCCATTACAGCTGCAAA
 
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rJMSF047N15-          ATTTAACCCCGCATGGAAATCTCCCTCACTGGTGGTACCATCACCAAAGTAGGTGACAAC
JMSF047N15+           ATTTAACCCCGCATGGAAATCTCCCTCACTGGTGGTACCATCACCAAAGTAGGTGACAAC
                      ____________________________________________________________
consensus             ATTTAACCCCGCATGGAAATCTCCCTCACTGGTGGTACCATCACCAAAGTAGGTGACAAC
 
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rJMSF047N15-          ACAAGCATCTTTCTGATCCATTTTAA                                  
JMSF047N15+           ACAAGCATCTTTCTGATCCATTTTAAGTGAATAAGCCACCCCAGCAGCCTGAGGAATCTG
                      ____________________________________________________________
consensus             ACAAGCATCTTTCTGATCCATTTTAAGTGAATAAGCCACCCCAGCAGCCTGAGGAATCTG
 
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JMSF047N15+           GGTTGCCAGAGGTGAAGAGATGGTCAAGATATTGTGCTTGTTAGAGCCATAATGGATAGG
                      ____________________________________________________________
consensus             GGTTGCCAGAGGTGAAGAGATGGTCAAGATATTGTGCTTGTTAGAGCCATAATGGATAGG
 
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JMSF047N15+           CATTTGCCTGCCCTTCCCATAATCACCCTTATTCCCAAAGCACTGGTTAGCCATTTCTTG
                      ____________________________________________________________
consensus             CATTTGCCTGCCCTTCCCATAATCACCCTTATTCCCAAAGCACTGGTTAGCCATTTCTTG
 
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JMSF047N15+           CAGGCTGAAGTCTCTCCATAACAGAACTCCTAGTTCCCGGTACTGAAGCATTAAAACATC
                      ____________________________________________________________
consensus             CAGGCTGAAGTCTCTCCATAACAGAACTCCTAGTTCCCGGTACTGAAGCATTAAAACATC
 
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JMSF047N15+           ATCCGGCGAGAGGGCAGCCGCAGATCCTATGCTGATAGCTTCTTCTCCAAAAGAGGTTAA
JMFS160E04+                               CAGATCCTATGCTGATAGCTTCTTCTCCAAAAGAGGTTAA
JMFS073E09+                                                       CTCCAAAAGAGGTTAA
                      ____________________________________________________________
consensus             ATCCGGCGAGAGGGCAGCCGCAGATCCTATGCTGATAGCTTCTTCTCCAAAAGAGGTTAA
 
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JMSF047N15+           ATAAAAGGACAATCTC                                            
JMFS160E04+           ATAAAAGGACAATCTCCCCTGCCT-TGAGCTTCATAAAATATGGTGTCCACAGTTTGAAC
JMFS073E09+           ATAAAAGGACAATCTCCCCTGCCTNTGAGCTTCATAAAATATGGTGTCCACAGTTTGAAC
                      ____________________________________________________________
consensus             ATAAAAGGACAATCTCCCCTGCCTNTGAGCTTCATAAAATATGGTGTCCACAGTTTGAAC
 
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JMFS160E04+           AGTCACCATCGCACTATACATCTTCATTGCCATTTCTTGTCTCACCTGCTCGAATACAGT
JMFS073E09+           AGTCACCATCGCACTATACATCTTCATTGCCATTTCTTGTCTCACCTGCTCGAATACAGT
                      ____________________________________________________________
consensus             AGTCACCATCGCACTATACATCTTCATTGCCATTTCTTGTCTCACCTGCTCGAATACAGT
 
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JMFS160E04+           GCTGCCAGGCAAGACATAGCCATCATCATCAAGTACACGATAACATGGAATCCTCCGATC
JMFS073E09+           GCTGCCAGGCAAGACATAGCCATCATCATCAAGTACACGATAACATGGAATCCTCCGATC
                      ____________________________________________________________
consensus             GCTGCCAGGCAAGACATAGCCATCATCATCAAGTACACGATAACATGGAATCCTCCGATC
 
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JMFS160E04+           AGTAGCCTCCGAGATAAACTTCATCTGCGCCGTAAAGGGCACCCTTCCACCAGGAAAATC
JMFS073E09+           AGTAGCCTCCGAGATAAACTTCATCTGCGCCGTAAAGGGCACCCTTCCACCAGGAAAATC
                      ____________________________________________________________
consensus             AGTAGCCTCCGAGATAAACTTCATCTGCGCCGTAAAGGGCACCCTTCCACCAGGAAAATC
 
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JMFS160E04+           CAATGTCCGATTGGGGTCATAATGATCATCGTAATCGTCCTCGGAAGAGTAACAGGGTGC
JMFS073E09+           CAATGTCCGATTGGGGTCATAATGATCATCGTAATCGTCCTCGGAAGAGTAACAGGGTGC
                      ____________________________________________________________
consensus             CAATGTCCGATTGGGGTCATAATGATCATCGTAATCGTCCTCGGAAGAGTAACAGGGTGC
 
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JMFS160E04+           CTCCGCTAGCTGCGCAGCTTTCATGGACTCGAAACGCCGCGGCGAGAAAATGGCGGCCGA
JMFS073E09+           CTCCGCTAGCTGCGCAGCTTTCATGGACTCGAAACGCCGCGGCGAGAAAATGGCGGCCGA
                      ____________________________________________________________
consensus             CTCCGCTAGCTGCGCAGCTTTCATGGACTCGAAACGCCGCGGCGAGAAAATGGCGGCCGA
 
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JMFS160E04+           CTTCCCGGATAATTCAGGCTTCTGCTCCCGCATTCCGGCGCCGGCGCCGGCGGTGGGCAA
JMFS073E09+           CTTCCCGGATAATTCAGGCTTCTGCTCCCGCATTCCGGCGCCGGCGCCGGCGGTGGGCAA
                      ____________________________________________________________
consensus             CTTCCCGGATAATTCAGGCTTCTGCTCCCGCATTCCGGCGCCGGCGCCGGCGGTGGGCAA
 
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JMFS160E04+           TGAGGCGGTAGAATGGTAAGCAGAAGCGTTGAGAAGGCGGCCCAAAACGGCGCCGATCTT
JMFS073E09+           TGAGGCGGTAGAATGGTAAGCAGAAGCGTTGAGAAGGCGGCCCAAAACGGCGCCGATCTT
                      ____________________________________________________________
consensus             TGAGGCGGTAGAATGGTAAGCAGAAGCGTTGAGAAGGCGGCCCAAAACGGCGCCGATCTT
 
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JMFS160E04+           GGTTGTGCTTGCTAGAGATGTAGCAATGCACCTTGTTGATCTCGAAACCCAAACTGCACC
JMFS073E09+           GGTTGTGCTTGCTAGAGATGTAGCAATGCACCTTGTTGATCTCGAAACCCAAACTGCACC
                      ____________________________________________________________
consensus             GGTTGTGCTTGCTAGAGATGTAGCAATGCACCTTGTTGATCTCGAAACCCAAACTGCACC
 
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JMFS160E04+           CATTTCAAATAATAATAATTATAATATTGAA                             
JMFS073E09+           CATTTCAAATAATAATAATTATAATATTGAATCAGCAGCTTAGGATTATGAGATACTGAA
                      ____________________________________________________________
consensus             CATTTCAAATAATAATAATTATAATATTGAATCAGCAGCTTAGGATTATGAGATACTGAA