| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF024K24 | Sequence | 476 | 004814 (8) | ref|XP_010320298.1| | 3e-63 | PREDICTED: calcium-transporting ATPase 1, chloroplastic [Solanum lycopersicum] | 716 | 004814 (8) | ref|XP_010320298.1| | 2e-135 | PREDICTED: calcium-transporting ATPase 1, chloroplastic [Solanum lycopersicum] |
| JMFF038P17 | Sequence | 562 | 004814 (8) | ref|XP_010320298.1| | 1e-70 | PREDICTED: calcium-transporting ATPase 1, chloroplastic [Solanum lycopersicum] | 768 | 002777 (4) | ref|XP_010091239.1| | 3e-73 | hypothetical protein L484_005263 [Morus notabilis] gb|EXB43802.1| hypothetical p |
| JMFS026A09 | Sequence | 645 | 004814 (8) | ref|XP_010320298.1| | 1e-87 | PREDICTED: calcium-transporting ATPase 1, chloroplastic [Solanum lycopersicum] | |||||
| JMFS073A09 | Sequence | 627 | 004814 (8) | ref|XP_010320298.1| | 3e-70 | PREDICTED: calcium-transporting ATPase 1, chloroplastic [Solanum lycopersicum] | |||||
| JMFS074A05 | Sequence | 613 | 004814 (8) | ref|XP_010320298.1| | 3e-73 | PREDICTED: calcium-transporting ATPase 1, chloroplastic [Solanum lycopersicum] | |||||
| JMSF009I09 | Sequence | 417 | 004814 (8) | emb|CDP01203.1| | 2e-38 | unnamed protein product [Coffea canephora] | 799 | 002777 (4) | emb|CDP01203.1| | 9e-61 | unnamed protein product [Coffea canephora] |
| JMSF021F07 | Sequence | 671 | 004814 (8) | ref|XP_010320298.1| | 3e-94 | PREDICTED: calcium-transporting ATPase 1, chloroplastic [Solanum lycopersicum] | 774 | 002777 (4) | ref|XP_010091239.1| | 5e-75 | hypothetical protein L484_005263 [Morus notabilis] gb|EXB43802.1| hypothetical p |
This contig is upended
. : . : . : . : . : . :
rJMFF024K24- AACTGTAAAGACTGTT
____________________________________________________________
consensus AACTGTAAAGACTGTT
. : . : . : . : . : . :
rJMFF024K24- TATAATCACTCGTAGCAGTGACAAATACCACAAGCAGGATACTAGCAACAATCCCAAGTC
____________________________________________________________
consensus TATAATCACTCGTAGCAGTGACAAATACCACAAGCAGGATACTAGCAACAATCCCAAGTC
. : . : . : . : . : . :
rJMFF024K24- CATCATGAGCACCCTTTGGCCATCCTTCAGTCAATATACCAACCACTAAAGACACAAAAG
____________________________________________________________
consensus CATCATGAGCACCCTTTGGCCATCCTTCAGTCAATATACCAACCACTAAAGACACAAAAG
. : . : . : . : . : . :
rJMFF024K24- CACATACAGCAAGTATCATCAGTGTCGTATCTTGAAGGGCTTCCCATACGAATATCCAAA
JMFS026A09+ CAAA
JMSF021F07+ AAGGGCTTCCCATACGAATATCCAAA
____________________________________________________________
consensus CACATACAGCAAGTATCATCAGTGTCGTATCTTGAAGGGCTTCCCATACGAATATCCAAA
. : . : . : . : . : . :
rJMFF024K24- ATCCCCTGGCTGGGCTCTCAGTAAACCTATTAATTCCATATATATCTTTTCTTCTGCTAA
JMFS026A09+ ATCCCCTGGCTGGGCTCTCAGTAAACCTATTAATTCCATATATATCTTTTCTTCTGCTAA
JMSF021F07+ ATCCCCTGGCTGGGCTCTCAGTAAACCTATTAATTCCATATATATCTTTTCTTCTGCTAA
____________________________________________________________
consensus ATCCCCTGGCTGGGCTCTCAGTAAACCTATTAATTCCATATATATCTTTTCTTCTGCTAA
. : . : . : . : . : . :
rJMFF024K24- GAGAATCCTCAGAAGTAGAAATCCCATTTGCAACTGATGTCGAGAGCTTGTCCGCAAGGC
JMFS026A09+ GAGAATCCTCAGAAGTAGAAATCCCATTTGCAACTGATGTCGAGAGCTTGTCCGCAAGGC
JMSF021F07+ GAGAATCCTCAGAAGTAGAAATCCCATTTGCAACTGATGTCGAGAGCTTGTCCGCAAGGC
JMFF038P17+ ATGTCGAGAGCTTGTCCGCAAGGC
JMFS074A05+ AGTAGAAATCCCATTTGCAACTGATGTCGAGAGCTTGTCCGCAAGGC
JMFS073A09+ CTGATGTCGAGAGCTTGTCCGCAAGGC
____________________________________________________________
consensus GAGAATCCTCAGAAGTAGAAATCCCATTTGCAACTGATGTCGAGAGCTTGTCCGCAAGGC
. : . : . : . : . : . :
rJMFF024K24- CGTCAACCCCACCATGAACTTTCAGCTTCTTCAAATTATGACCCTCAACAATAGAACCTA
JMFS026A09+ CGTCAACCCCACCATGAACTTTCAGCTTCTTCAAATTATGACCCTCAACAATAGAACCTA
JMSF021F07+ CGTCAACCCCACCATGAACTTTCAGCTTCTTCAAATTATGACCCTCAACAATAGAACCTA
JMFF024K24+ TCAGCTTCTTCAAATTATGACCCTCAACAATAGAACCTA
JMFF038P17+ CGTCAACCCCACCATGAACTTTCAGCTTCTTCAAATTATGACCCTCAACAATAGAACCTA
JMFS074A05+ CGTCAACCCCACCATGAACTTTCAGCTTCTTCAAATTATGACCCTCAACAATAGAACCTA
JMFS073A09+ CGTCAACCCCACCATGAACTTTCAGCTTCTTCAAATTATGACCCTCAACAATAGAACCTA
____________________________________________________________
consensus CGTCAACCCCACCATGAACTTTCAGCTTCTTCAAATTATGACCCTCAACAATAGAACCTA
. : . : . : . : . : . :
rJMFF024K24- ACTCATCACCACATATCTGAAAGCCGGCAGCCTTGACGTCCTCAGGGACAGAGTAACTTG
JMFS026A09+ ACTCATCACCACATATCTGAAAGCCGGCAGCCTTGACGTCCTCAGGGACAGAGTAACTTG
JMSF021F07+ ACTCATCACCACATATCTGAAAGCCGGCAGCCTTGACGTCCTCAGGGACAGAGTAACTTG
JMFF024K24+ ACTCATCACCACATATCTGAAAGCCGGCAGCCTTGACGTCCTCAGGGACAGAGTAACTTG
JMFF038P17+ ACTCATCACCACATATCTGAAAGCCGGCAGCCTTGACGTCCTCAGGGACAGAGTAACTTG
JMFS074A05+ ACTCATCACCACATATCTGAAAGCCGGCAGCCTTGACGTCCTCAGGGACAGAGTAACTTG
JMFS073A09+ ACTCATCACCACATATCTGAAAGCCGGCAGCCTTGACGTCCTCAGGGACAGAGTAACTTG
____________________________________________________________
consensus ACTCATCACCACATATCTGAAAGCCGGCAGCCTTGACGTCCTCAGGGACAGAGTAACTTG
. : . : . : . : . : . :
rJMFF024K24- CACCTTGAATAAAGCTAAGTGCAGCTTGTGAAACCAGAACAGCAATTCTTAGTTTCTCCT
JMFS026A09+ CACCTTGAATAAAGCTAAGTGCAGCTTGTGAAACCAGAACAGCAATTCTTAGTTTCTCCT
JMSF021F07+ CACCTTGAATAAAGCTAAGTGCAGCTTGTGAAACCAGAACAGCAATTCTTAGTTTCTCCT
JMFF024K24+ CACCTTGAATAAAGCTAAGTGCAGCTTGTGAAACCAGAACAGCAATTCTTAGTTTCTCCT
JMFF038P17+ CACCTTGAATAAAGCTAAGTGCAGCTTGTGAAACCAGAACAGCAATTCTTAGTTTCTCCT
JMSF009I09+ AAGCTAAGTGCAGCTTGTGAAACCAGAACAGCAATTCTTAGTTTCTCCT
JMFS074A05+ CACCTTGAATAAAGCTAAGTGCAGCTTGTGAAACCAGAACAGCAATTCTTAGTTTCTCCT
JMFS073A09+ CACCTTGAATAAAGCTAAGTGCAGCTTGTGAAACCAGAACAGCAGTTCTTAGTTTCTCCT
____________________________________________________________
consensus CACCTTGAATAAAGCTAAGTGCAGCTTGTGAAACCAGAACAGCAATTCTTAGTTTCTCCT
. : . : . : . : . : . :
rJMFF024K24- GATTGGAGCGCTGAATAGCACGAGCTTCGAAGCGCTTGGACAGATTAGCGGTGAATCGAA
JMFS026A09+ GATTGGAGCGCTGAATAGCACGAGCTTCGAAGCGCTTGGACAGATTAGCGGTGAATCGAA
JMSF021F07+ GATTGGAGCGCTGAATAGCACGAGCTTCGAAGCGCTTGGACAGATTAGCGGTGAATCGAA
JMFF024K24+ GATTGGAGCGCTGAATAGCACGAGCTTCGAAGCGCTTGGACAGATTAGCGGTGAATCGAA
JMFF038P17+ GATTGGAGCGCTGAATAGCACGAGCTTCGAAGCGCTTGGACAGATTAGCGGTGAATCGAA
JMSF009I09+ GATTGGAGCGCTGAATAGCACGAGCTTCGAAGCGCTTGGACAGATTAGCGGTGAATCGAA
JMFS074A05+ GATTGGAGCGCTGAATAGCACGAGCTTCGAAGCGCTTGGACAGATTAGCGGTGAATCGAA
JMFS073A09+ GATTGGAGCGCTGAATAGCACGAGCTTCGAAGCGCTTGGACAGATTAGCGGTGAATCGAA
____________________________________________________________
consensus GATTGGAGCGCTGAATAGCACGAGCTTCGAAGCGCTTGGACAGATTAGCGGTGAATCGAA
. : . : . : . : . : . :
rJMFF024K24- ACCTCCGCTTGCGATTCTTGACGAGCCAGCAGAGCTTCCTCCATCGCTCCAAAGCTTCCT
JMFS026A09+ ACCTCCGCTTGCGATTCTTGACGAGCCAGCAGAGCTTCCTCCATCGCTCCAAAGCTTCCT
JMSF021F07+ ACCTCCGCTTGCGATTCTTGACGAGCCAGCAGAGCTTCCTCCATCGCTCCAAAGCTTCCT
JMFF024K24+ ACCTCCGCTTGCGATTCTTGACGAGCCAGCAGAGCTTCCTCCATCGCTCCAAAGCTTCCT
JMFF038P17+ ACCTCCGCTTGCGATTCTTGACGAGCCAGCAGAGCTTCCTCCATCGCTCCAAAGCTTCCT
JMSF009I09+ ACCTCCGCTTGCGATTCTTGACGAGCCAGCAGAGCTTCCTCCATCGCTCCAAAGCTTCCT
JMFS074A05+ ACCTCCGCTTGCGATTCTTGACGAGCCAGCAGAGCTTCCTCCATCGCTCCAAAGCTTCCT
JMFS073A09+ ACCTCCGCTTGCGATTCTTGACGAGCCAGCAGAGCTTCCTCCATCGCTCCAAAGCTTCCT
____________________________________________________________
consensus ACCTCCGCTTGCGATTCTTGACGAGCCAGCAGAGCTTCCTCCATCGCTCCAAAGCTTCCT
. : . : . : . : . : . :
rJMFF024K24- CCGATGAGTTCTTCGCCTTCACTTCCCCGTAATTCTCCTTAATATACTCCTCCATACAGA
JMFS026A09+ CCGATGAGTTCTTCGCCTTCACTTCCCCGTAATTCTCCTTAATATACTCCTCCATACAGA
JMSF021F07+ CCGATGAGTTCTTCGCCTTCACTTCCCCGTAATTCTCCTTAATATACTCCTCCATACAGA
JMFF024K24+ CCGATGAGTTCTTCGCCTTCACTTCCCCGTAATTCTCCTTAATATACTCCTCCATACAGA
JMFF038P17+ CCGATGAGTTCTTCGCCTTCACTTCCCCGTAATTCTCCTTAATATACTCCTCCATACAGA
JMSF009I09+ CCGATGAGTTCTTCGCCTTCACTTCCCCGTAATTCTCCTTAATATACTCCTCCATACAGA
JMFS074A05+ CCGATGAGTTCTTCGCCTTCACTTCCCCGTAATTCTCCTTAATATACTCCTCCATACAGA
JMFS073A09+ CCGATGAGTTCTTCGCCTTCACTTCCCCGTAATTCTCCTTAATATACTCCTCCATACAGA
____________________________________________________________
consensus CCGATGAGTTCTTCGCCTTCACTTCCCCGTAATTCTCCTTAATATACTCCTCCATACAGA
. : . : . : . : . : . :
rJMFF024K24- TCAACTACGCAACACTACTGCTTCTTCTTCTGCTGAGAAT
JMFS026A09+ TCAACTACGCAACACTACTGCTTCTTCTTCTGCTGAGAATTTAAGAAACCTTGCACGCAC
JMSF021F07+ TCAACTACGCAACACTACTGCTTCTTCTTCTGCTGAGAATTTAAGAAACCTTGCACGCAC
JMFF024K24+ TCAACTACGCAACACTACTGCTTCTTCTTCTGCTGAGAATTTAAGAAACCTTGCACGCAC
JMFF038P17+ TCAACTACGCAACACTACTGCTTCTTCTTCTGCTGAGAATTTAAGAAACCTTGCACGCAC
JMSF009I09+ TCAACTACGCAACACTACTGCTTCTTCTTCTGCTGAGAATTTAAGAAACCTTGCACGCAC
JMFS074A05+ TCAACTACGCAACACTACTGCTTCTTCTTCTGCTGAGAATTTAAGAAACCTTGCACGCAC
JMFS073A09+ TCAACTACGCAACACTACTGCTTCTTCTTCTGCTGAGAATTTAAGAAACCTTGCACGCAC
____________________________________________________________
consensus TCAACTACGCAACACTACTGCTTCTTCTTCTGCTGAGAATTTAAGAAACCTTGCACGCAC
. : . : . : . : . : . :
JMFS026A09+ TGCTGCAGCTGGAGCTCTGCTCCGCCGCCTGTTATACCTAAACCACTAAAACTGCCTGCT
JMSF021F07+ TGCTGCAGCTGGAGCTCTGCTCCGCCGCCTGTTATACCTAAACCACTAAAACTGCCTGCT
JMFF024K24+ TGCTGCAGCTGGAGCTCTGCTCCGCCGCCTGTTATACCTAAACCACTAAAACTGCCTGCT
JMFF038P17+ TGCTGCAGCTGGAGCTCTGCTCCGCCGCCTGTTATACCTAAACCACTAAAACTGCCTGCT
JMSF009I09+ TGCTGCAGCTGGAGCTCTGCTCCGCCGCCTGTTATACCTAAACCACTAAAACTGCCTGCT
JMFS074A05+ TGCTGCAGCTGGAGCTCTGCTCCGCCGCCTGTTATACCTAAACCACTAAAACTGCCTGCT
JMFS073A09+ TGCTGCAGCTGGAGCTCTGCTCCGCCGCCTGTTATACCTAAACCACTAAAACTGCCTGCT
____________________________________________________________
consensus TGCTGCAGCTGGAGCTCTGCTCCGCCGCCTGTTATACCTAAACCACTAAAACTGCCTGCT
. : . : . : . : . : . :
JMFS026A09+ ATCTCCCAAAAGCAGTTGACGAATATGGAGATTTACTTTAC
JMSF021F07+ ATCTCCCAAAAGCAGTTGACGAATATGGAGATTTACTTTACTT
JMFF024K24+ ATCTCCCAAAAGCAGTT
JMFF038P17+ ATCTCCCAAAAGCAGTTGACGAATATGGAGATTTACTTTACTTTACTTCAATCTTCGC
JMSF009I09+ ATCTCCCAAAAGCAGTTGACGAATATGGAGATTTACTTTACTTTACTTCAATCTTCGCAG
JMFS074A05+ ATCTCCCAAAAGCAGTTGACGAATATGGAGATTTACTTTACTTTACTTCAATCTTCGCAG
JMFS073A09+ ATCTCCCAAAAGCAGTTGACGAATATGGAGATTTACTTTACTTTACTTCAATCTTCGCAG
____________________________________________________________
consensus ATCTCCCAAAAGCAGTTGACGAATATGGAGATTTACTTTACTTTACTTCAATCTTCGCAG
. : . : . : . : . : . :
JMSF009I09+ TGAAGTC
JMFS074A05+ TGAAGTCGAAGATAAAAAGTGTATTC
JMFS073A09+ TGAAGTCGAAGATAAAAAGTGTATTCTATTCTATTCTTTATGTTCGTGAATCGTGACTGA
____________________________________________________________
consensus TGAAGTCGAAGATAAAAAGTGTATTCTATTCTATTCTTTATGTTCGTGAATCGTGACTGA