Contig 004811:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS070A05Sequence617004811 (4)emb|CDP14278.1|1e-16unnamed protein product [Coffea canephora]
JMFS074D01Sequence624004811 (4)ref|XP_010497432.1|9e-55PREDICTED: ATPase 8, plasma membrane-type-like, partial [Camelina sativa]
JMFS096A03Sequence604004811 (4)ref|XP_010497432.1|2e-66PREDICTED: ATPase 8, plasma membrane-type-like, partial [Camelina sativa]
JMFS148D12Sequence616004811 (4)ref|XP_010430916.1|4e-86PREDICTED: ATPase 8, plasma membrane-type-like [Camelina sativa]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS148D12+ GCATATGCAGAAGTTC
                      ____________________________________________________________
consensus GCATATGCAGAAGTTC
 
. : . : . : . : . : . :
JMFS148D12+ NCAATAGAGGTCAGGACCTTTTGGAAGTGGCCAACTTGGTTGGTGCTGTCGACCAGATGG
                      ____________________________________________________________
consensus NCAATAGAGGTCAGGACCTTTTGGAAGTGGCCAACTTGGTTGGTGCTGTCGACCAGATGG
 
. : . : . : . : . : . :
JMFS148D12+ GCCGCTTTCCCAAAGAAGGTGTGCAACCCAGTAGCTATAACAACTGCCTCTATCTCGCCC
JMFS096A03+ GCTTTCCCAAAGAAGGTGTGCAACCCAGTAGCTATAACAACTGCCTCTATCTCGCCC
JMFS074D01+ ATCTCGCCC
                      ____________________________________________________________
consensus GCCGCTTTCCCAAAGAAGGTGTGCAACCCAGTAGCTATAACAACTGCCTCTATCTCGCCC
 
. : . : . : . : . : . :
JMFS148D12+ TGCTTACAGGTGGATCCCGAAAACACCTCATCCCCGGGGTTCCTTGTCACAGGCAGGGAT
JMFS096A03+ TGCTTACAGGTGGATCCCGAAAACACCTCATCCCCGGGGTTCCTTGTCACAGGCAGGGAT
JMFS074D01+ TGCTTACAGGTGGATCCCGAAAACACCTCATCNCCGGGGTTCCTTGTCACAGGCAGGGAT
                      ____________________________________________________________
consensus TGCTTACAGGTGGATCCCGAAAACACCTCATCCCCGGGGTTCCTTGTCACAGGCAGGGAT
 
. : . : . : . : . : . :
JMFS148D12+ TCCCCGGTCAATGCAGACTGATCAATCTTCAGGGGATCCCCTTCCAGAAGACGAGCATCA
JMFS096A03+ TCCCCGGTCAATGCAGACTGATCAATCTTCAGGGGATCCCCTTCCAGAAGACGAGCATCA
JMFS074D01+ TCCCCGGTCAATGCAGACTGATCAATCTTCAGGGGATCCCCTTCCAGAAGACGAGCATCA
                      ____________________________________________________________
consensus TCCCCGGTCAATGCAGACTGATCAATCTTCAGGGGATCCCCTTCCAGAAGACGAGCATCA
 
. : . : . : . : . : . :
JMFS148D12+ GCCGGGATAATGTCTCCCAGCTTGATGCTTACCACATCTCCTGGGACAAGAATCGCAGCG
JMFS096A03+ GCCGGGATAATGTCTCCCAGCTTGATGCTTACCACATCTCCTGGGACAAGAATCGCAGCG
JMFS074D01+ GCCGGGATAATGTCTCCCAGCTTGATGCTTACCACATCTCCTGGGACAAGAATCGCAGCG
JMFS070A05+ ACAAGAATCGCAGCG
                      ____________________________________________________________
consensus GCCGGGATAATGTCTCCCAGCTTGATGCTTACCACATCTCCTGGGACAAGAATCGCAGCG
 
. : . : . : . : . : . :
JMFS148D12+ TCCATCTCGGTCCATTTCCCACCCCTCAACACCTTTGTTTTGGGAGCAAGCCCAGCCATG
JMFS096A03+ TCCATCTCGGTCCATTTCCCACCCCTCAACACCTTTGTTTTGGGAGCAAGCCCAGCCATG
JMFS074D01+ TCCATCTCGGTCCATTTCCCACCCCTCAACACCTTTGTTTTGGGAGCAAGCCCAGCCATG
JMFS070A05+ TCCATCTCGGTCCATTTCCCACCCCTCAACACCTTTGTTTTGGGAGCAAGCCCAGCCATG
                      ____________________________________________________________
consensus TCCATCTCGGTCCATTTCCCACCCCTCAACACCTTTGTTTTGGGAGCAAGCCCAGCCATG
 
. : . : . : . : . : . :
JMFS148D12+ AGAGCTGCTGCGGCATTCCCAGCATTGTTTTCCTCAATAAAGCTCACAGTGGAGTTTATG
JMFS096A03+ AGAGCTGCTGCGGCATTCCCAGCATTGTTTTCCTCAATAAAGCTCACAGTGGAGTTTATG
JMFS074D01+ AGAGCTGCTGCGGCATTCCCAGCATTGTTTTCCTCAATAAAGCTCACAGTGGAGTTTATG
JMFS070A05+ AGAGCTGCTGCGGCATTCCCAGCATTGTTTTCCTCAATAAAGCTCACAGTGGAGTTTATG
                      ____________________________________________________________
consensus AGAGCTGCTGCGGCATTCCCAGCATTGTTTTCCTCAATAAAGCTCACAGTGGAGTTTATG
 
. : . : . : . : . : . :
JMFS148D12+ ATCAACAACACTGTGATCCCAACAAAATCTTGCCAATCTGGTGGCCTCCC
JMFS096A03+ ATCAACAACACTGTGATCCCAACAAAATCTTGCCAATCTGGTGGCCTCCC
JMFS074D01+ ATCAACAACACTGTGATCCCAACAAAATCTTGCCAATCTGGTGGCCTCCCCTGCAATGCA
JMFS070A05+ ATCAACAACACTGTGATCCCAACAAAATCTTGCCAATCTGGTGGCCTCCCCTGCAATGCA
                      ____________________________________________________________
consensus ATCAACAACACTGTGATCCCAACAAAATCTTGCCAATCTGGTGGCCTCCCCTGCAATGCA
 
. : . : . : . : . : . :
JMFS074D01+ AAACACCCATCATATATCAACCATCTTTTTTTTTTCAAACTGCGACAGTCAAGAATTTTT
JMFS070A05+ AAACACCCATCATATATCAACCATCTTTTTTTTTTCAAACTGCGACAGTCAAGAATTTTT
                      ____________________________________________________________
consensus AAACACCCATCATATATCAACCATCTTTTTTTTTTCAAACTGCGACAGTCAAGAATTTTT
 
. : . : . : . : . : . :
JMFS074D01+ TCAGACAACAACCAAATTGAGCAATTTTTTTTCTTTTTTACTCACCATAAAATCACAATA
JMFS070A05+ TCAGACAACAACCAAATTGAGCAATTTTTTTTCTTTTTTACTCACCATAAAATCACAATA
                      ____________________________________________________________
consensus TCAGACAACAACCAAATTGAGCAATTTTTTTTCTTTTTTACTCACCATAAAATCACAATA
 
. : . : . : . : . : . :
JMFS074D01+ TATCACACATATACGCAATCAAGGAAAAATATATATGTTTACGAGTAAAAGTTGGTTTGA
JMFS070A05+ TATCACACATATACGCAATCAAGGAAAAATATATATGTTTACGAGTAAAAGTTGGTTTGA
                      ____________________________________________________________
consensus TATCACACATATACGCAATCAAGGAAAAATATATATGTTTACGAGTAAAAGTTGGTTTGA
 
. : . : . : . : . : . :
JMFS074D01+ TGGACATAAACACTTACGAAAATAAATTTTGTTTTAGGATAAAAGCAATTTTGGTGAACA
JMFS070A05+ TGGACATAAACACTTACGAAAATAAATTTTGTTTTAGGATAAAAGCAATTTTGGTGAACA
                      ____________________________________________________________
consensus TGGACATAAACACTTACGAAAATAAATTTTGTTTTAGGATAAAAGCAATTTTGGTGAACA
 
. : . : . : . : . : . :
JMFS074D01+ TAAATCTTAACTGAA
JMFS070A05+ TAAATCTTAACTGAATTTCAAAAATCAACAATAACTCTCCGCACACCACTTGTCCCTAAA
                      ____________________________________________________________
consensus TAAATCTTAACTGAATTTCAAAAATCAACAATAACTCTCCGCACACCACTTGTCCCTAAA
 
. : . : . : . : . : . :
JMFS070A05+ ATTGAAGATCCTTACTGCCAATTCTTGAATCGATGAGAAGAGACTAGACCAAATGACAAA
                      ____________________________________________________________
consensus ATTGAAGATCCTTACTGCCAATTCTTGAATCGATGAGAAGAGACTAGACCAAATGACAAA
 
. : . : . : . : . : . :
JMFS070A05+ GGTAGGGTTTTATCCATTTGGGAGAGAAGGAAGAGAGAATGACCGAGGAGGAAAATATAA
                      ____________________________________________________________
consensus GGTAGGGTTTTATCCATTTGGGAGAGAAGGAAGAGAGAATGACCGAGGAGGAAAATATAA