Contig 004811:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS070A05Sequence617004811 (4)emb|CDP14278.1|1e-16unnamed protein product [Coffea canephora]
JMFS074D01Sequence624004811 (4)ref|XP_010497432.1|9e-55PREDICTED: ATPase 8, plasma membrane-type-like, partial [Camelina sativa]
JMFS096A03Sequence604004811 (4)ref|XP_010497432.1|2e-66PREDICTED: ATPase 8, plasma membrane-type-like, partial [Camelina sativa]
JMFS148D12Sequence616004811 (4)ref|XP_010430916.1|4e-86PREDICTED: ATPase 8, plasma membrane-type-like [Camelina sativa]

Alignment

This contig is upended


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JMFS148D12+                                                       GCATATGCAGAAGTTC
                      ____________________________________________________________
consensus                                                         GCATATGCAGAAGTTC
 
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JMFS148D12+           NCAATAGAGGTCAGGACCTTTTGGAAGTGGCCAACTTGGTTGGTGCTGTCGACCAGATGG
                      ____________________________________________________________
consensus             NCAATAGAGGTCAGGACCTTTTGGAAGTGGCCAACTTGGTTGGTGCTGTCGACCAGATGG
 
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JMFS148D12+           GCCGCTTTCCCAAAGAAGGTGTGCAACCCAGTAGCTATAACAACTGCCTCTATCTCGCCC
JMFS096A03+              GCTTTCCCAAAGAAGGTGTGCAACCCAGTAGCTATAACAACTGCCTCTATCTCGCCC
JMFS074D01+                                                              ATCTCGCCC
                      ____________________________________________________________
consensus             GCCGCTTTCCCAAAGAAGGTGTGCAACCCAGTAGCTATAACAACTGCCTCTATCTCGCCC
 
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JMFS148D12+           TGCTTACAGGTGGATCCCGAAAACACCTCATCCCCGGGGTTCCTTGTCACAGGCAGGGAT
JMFS096A03+           TGCTTACAGGTGGATCCCGAAAACACCTCATCCCCGGGGTTCCTTGTCACAGGCAGGGAT
JMFS074D01+           TGCTTACAGGTGGATCCCGAAAACACCTCATCNCCGGGGTTCCTTGTCACAGGCAGGGAT
                      ____________________________________________________________
consensus             TGCTTACAGGTGGATCCCGAAAACACCTCATCCCCGGGGTTCCTTGTCACAGGCAGGGAT
 
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JMFS148D12+           TCCCCGGTCAATGCAGACTGATCAATCTTCAGGGGATCCCCTTCCAGAAGACGAGCATCA
JMFS096A03+           TCCCCGGTCAATGCAGACTGATCAATCTTCAGGGGATCCCCTTCCAGAAGACGAGCATCA
JMFS074D01+           TCCCCGGTCAATGCAGACTGATCAATCTTCAGGGGATCCCCTTCCAGAAGACGAGCATCA
                      ____________________________________________________________
consensus             TCCCCGGTCAATGCAGACTGATCAATCTTCAGGGGATCCCCTTCCAGAAGACGAGCATCA
 
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JMFS148D12+           GCCGGGATAATGTCTCCCAGCTTGATGCTTACCACATCTCCTGGGACAAGAATCGCAGCG
JMFS096A03+           GCCGGGATAATGTCTCCCAGCTTGATGCTTACCACATCTCCTGGGACAAGAATCGCAGCG
JMFS074D01+           GCCGGGATAATGTCTCCCAGCTTGATGCTTACCACATCTCCTGGGACAAGAATCGCAGCG
JMFS070A05+                                                        ACAAGAATCGCAGCG
                      ____________________________________________________________
consensus             GCCGGGATAATGTCTCCCAGCTTGATGCTTACCACATCTCCTGGGACAAGAATCGCAGCG
 
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JMFS148D12+           TCCATCTCGGTCCATTTCCCACCCCTCAACACCTTTGTTTTGGGAGCAAGCCCAGCCATG
JMFS096A03+           TCCATCTCGGTCCATTTCCCACCCCTCAACACCTTTGTTTTGGGAGCAAGCCCAGCCATG
JMFS074D01+           TCCATCTCGGTCCATTTCCCACCCCTCAACACCTTTGTTTTGGGAGCAAGCCCAGCCATG
JMFS070A05+           TCCATCTCGGTCCATTTCCCACCCCTCAACACCTTTGTTTTGGGAGCAAGCCCAGCCATG
                      ____________________________________________________________
consensus             TCCATCTCGGTCCATTTCCCACCCCTCAACACCTTTGTTTTGGGAGCAAGCCCAGCCATG
 
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JMFS148D12+           AGAGCTGCTGCGGCATTCCCAGCATTGTTTTCCTCAATAAAGCTCACAGTGGAGTTTATG
JMFS096A03+           AGAGCTGCTGCGGCATTCCCAGCATTGTTTTCCTCAATAAAGCTCACAGTGGAGTTTATG
JMFS074D01+           AGAGCTGCTGCGGCATTCCCAGCATTGTTTTCCTCAATAAAGCTCACAGTGGAGTTTATG
JMFS070A05+           AGAGCTGCTGCGGCATTCCCAGCATTGTTTTCCTCAATAAAGCTCACAGTGGAGTTTATG
                      ____________________________________________________________
consensus             AGAGCTGCTGCGGCATTCCCAGCATTGTTTTCCTCAATAAAGCTCACAGTGGAGTTTATG
 
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JMFS148D12+           ATCAACAACACTGTGATCCCAACAAAATCTTGCCAATCTGGTGGCCTCCC          
JMFS096A03+           ATCAACAACACTGTGATCCCAACAAAATCTTGCCAATCTGGTGGCCTCCC          
JMFS074D01+           ATCAACAACACTGTGATCCCAACAAAATCTTGCCAATCTGGTGGCCTCCCCTGCAATGCA
JMFS070A05+           ATCAACAACACTGTGATCCCAACAAAATCTTGCCAATCTGGTGGCCTCCCCTGCAATGCA
                      ____________________________________________________________
consensus             ATCAACAACACTGTGATCCCAACAAAATCTTGCCAATCTGGTGGCCTCCCCTGCAATGCA
 
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JMFS074D01+           AAACACCCATCATATATCAACCATCTTTTTTTTTTCAAACTGCGACAGTCAAGAATTTTT
JMFS070A05+           AAACACCCATCATATATCAACCATCTTTTTTTTTTCAAACTGCGACAGTCAAGAATTTTT
                      ____________________________________________________________
consensus             AAACACCCATCATATATCAACCATCTTTTTTTTTTCAAACTGCGACAGTCAAGAATTTTT
 
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JMFS074D01+           TCAGACAACAACCAAATTGAGCAATTTTTTTTCTTTTTTACTCACCATAAAATCACAATA
JMFS070A05+           TCAGACAACAACCAAATTGAGCAATTTTTTTTCTTTTTTACTCACCATAAAATCACAATA
                      ____________________________________________________________
consensus             TCAGACAACAACCAAATTGAGCAATTTTTTTTCTTTTTTACTCACCATAAAATCACAATA
 
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JMFS074D01+           TATCACACATATACGCAATCAAGGAAAAATATATATGTTTACGAGTAAAAGTTGGTTTGA
JMFS070A05+           TATCACACATATACGCAATCAAGGAAAAATATATATGTTTACGAGTAAAAGTTGGTTTGA
                      ____________________________________________________________
consensus             TATCACACATATACGCAATCAAGGAAAAATATATATGTTTACGAGTAAAAGTTGGTTTGA
 
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JMFS074D01+           TGGACATAAACACTTACGAAAATAAATTTTGTTTTAGGATAAAAGCAATTTTGGTGAACA
JMFS070A05+           TGGACATAAACACTTACGAAAATAAATTTTGTTTTAGGATAAAAGCAATTTTGGTGAACA
                      ____________________________________________________________
consensus             TGGACATAAACACTTACGAAAATAAATTTTGTTTTAGGATAAAAGCAATTTTGGTGAACA
 
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JMFS074D01+           TAAATCTTAACTGAA                                             
JMFS070A05+           TAAATCTTAACTGAATTTCAAAAATCAACAATAACTCTCCGCACACCACTTGTCCCTAAA
                      ____________________________________________________________
consensus             TAAATCTTAACTGAATTTCAAAAATCAACAATAACTCTCCGCACACCACTTGTCCCTAAA
 
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JMFS070A05+           ATTGAAGATCCTTACTGCCAATTCTTGAATCGATGAGAAGAGACTAGACCAAATGACAAA
                      ____________________________________________________________
consensus             ATTGAAGATCCTTACTGCCAATTCTTGAATCGATGAGAAGAGACTAGACCAAATGACAAA
 
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JMFS070A05+           GGTAGGGTTTTATCCATTTGGGAGAGAAGGAAGAGAGAATGACCGAGGAGGAAAATATAA
                      ____________________________________________________________
consensus             GGTAGGGTTTTATCCATTTGGGAGAGAAGGAAGAGAGAATGACCGAGGAGGAAAATATAA