Contig 004810:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS025H03Sequence619004810 (9)ref|XP_009589003.1|7e-68PREDICTED: glutamate receptor 3.4 isoform X1 [Nicotiana tomentosiformis] ref|XP_
JMFS046H08Sequence627004810 (9)ref|XP_009589003.1|1e-74PREDICTED: glutamate receptor 3.4 isoform X1 [Nicotiana tomentosiformis] ref|XP_
JMFS068B07Sequence627004810 (9)ref|XP_009589003.1|2e-68PREDICTED: glutamate receptor 3.4 isoform X1 [Nicotiana tomentosiformis] ref|XP_
JMFS069H03Sequence643004810 (9)ref|XP_009589003.1|4e-71PREDICTED: glutamate receptor 3.4 isoform X1 [Nicotiana tomentosiformis] ref|XP_
JMFS086D08Sequence642004810 (9)ref|XP_009589003.1|9e-73PREDICTED: glutamate receptor 3.4 isoform X1 [Nicotiana tomentosiformis] ref|XP_
JMFS102A07Sequence622004810 (9)ref|XP_009589003.1|6e-85PREDICTED: glutamate receptor 3.4 isoform X1 [Nicotiana tomentosiformis] ref|XP_
JMFS103F10Sequence567004810 (9)ref|XP_009589003.1|1e-70PREDICTED: glutamate receptor 3.4 isoform X1 [Nicotiana tomentosiformis] ref|XP_
JMFS153C01Sequence625004810 (9)ref|XP_009589003.1|4e-87PREDICTED: glutamate receptor 3.4 isoform X1 [Nicotiana tomentosiformis] ref|XP_
JMFS154C06Sequence641004810 (9)ref|XP_009589003.1|9e-73PREDICTED: glutamate receptor 3.4 isoform X1 [Nicotiana tomentosiformis] ref|XP_

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS153C01+                  GCATCGCCCAATGCTGAAATCCCATTTCTACCATTATCGTCATCAACGTAGAT
JMFS102A07+                           AATGCTGAAATCCCATTTCTACCATTATCGTCATCAACGTAGAT
                      ____________________________________________________________
consensus                    GCATCGCCCAATGCTGAAATCCCATTTCTACCATTATCGTCATCAACGTAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS153C01+           AGCAATCACCTCCTTCCATCCAAAATACTCGACAAGATCAGCAACAGCTCGCATCTGGTG
JMFS102A07+           AGCAATCACCTCCTTCCATCCAAAATACTCGACAAGATCAGCAACAGCTCGCATCTGGTG
JMFS046H08+             CAATCACCTCCTTCCATCCAAAATACTGGACAAGATCAGCAACAGCTCGCATCTGGTG
JMFS154C06+                     TCCTTCCATCCAAAATACTCGACAAGATCAGCAACAGCTCGCATCTGGTG
JMFS025H03+                                            AAGATCAGCAACAGCTCGCATCTGGTG
JMFS068B07+                                      CTCGACAAGATCAGCAACAGCTCGCATCTGGTG
JMFS103F10+                              CCAAAATACTCGACAAGATCAGCAACAGCTCGCATCTGGTG
JMFS086D08+                       CTTCCATCCAAAATACTCGACAAGATCAGCAACAGCTCGCATCTGGTG
JMFS069H03+                         TCCATCCAAAATACTCGACAAGATCAGCAACAGCTCGCATCTGGTG
                      ____________________________________________________________
consensus             AGCAATCACCTCCTTCCATCCAAAATACTCGACAAGATCAGCAACAGCTCGCATCTGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS153C01+           GTAATCATCCGTGACTGTTCGAACAAAGTATGGGTACTGCAGAGAAGCAAGAGTCGGGTC
JMFS102A07+           GTAATCATCCGTGACTGTTCGAACAAAGTATGGGTACTGCAGAGAAGCAAGAGTCGGGTC
JMFS046H08+           GTAATCATCCGTGACTGTTCGAACAAAGTATGGGTACTGCAGAGAAGCAAGAGTCGGGTC
JMFS154C06+           GTAATCATCCGTGACTGTTCGAACAAAGTATGGGTACTGCAGAGAAGCAAGAGTCGGGTC
JMFS025H03+           GTAATCATCCGTGACTGTTCGAACAAAGTATGGGTACTGCAGAGAAGCAAGAGTCGGGTC
JMFS068B07+           GTAATCATCCGTGACTGTTCGAACAAAGTATGGGTACTGCAGAGAAGCAAGAGTCGGGTC
JMFS103F10+           GTAATCATCCGTGACTGTTCGAACAAAGTATGGGTACTGCAGAGAAGCAAGAGTCGGGTC
JMFS086D08+           GTAATCATCCGTGACTGTTCGAACAAAGTATGGGTACTGCAGAGAAGCAAGAGTCGGGTC
JMFS069H03+           GTAATCATCCGTGACTGTTCGAACAAAGTATGGGTACTGCAGAGAAGCAAGAGTCGGGTC
                      ____________________________________________________________
consensus             GTAATCATCCGTGACTGTTCGAACAAAGTATGGGTACTGCAGAGAAGCAAGAGTCGGGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS153C01+           TGTTGCCCCAAATGACAAAAGCGGGACATGAAGTTCATTCACAATGTGAGAAATTACGTG
JMFS102A07+           TGTTGCCCCAAATGACAAAAGCGGGACATGAAGTTCATTCACAATGTGAGAAATTACGTG
JMFS046H08+           TGTTGCCCCAAATGACAAAAGCGGGACATGAAGTTCATTCACAATGTGAGAAATTACGTG
JMFS154C06+           TGTTGCCCCAAATGACAAAAGCGGGACATGAAGTTCATTCACAATGTGAGAAATTACGTG
JMFS025H03+           TGTTGCCCCAAATGACAAAAGCGGGACATGAAGTTCATTCACAATGTGAGAAATTACGTG
JMFS068B07+           TGTTGCCCCAAATGACAAAAGCGGGACATGAAGTTCATTCACAATGTGAGAAATTACGTG
JMFS103F10+           TGTTGCCCCAAATGACAAAAGCGGGACATGAAGTTCATTCACAATGTGAGAAATTACGTG
JMFS086D08+           TGTTGCCCCAAATGACAAAAGCGGGACATGAAGTTCATTCACAATGTGAGAAATTACGTG
JMFS069H03+           TGTTGCCCCAAATGACAAAAGCGGGACATGAAGTTCATTCACAATGTGAGAAATTACGTG
                      ____________________________________________________________
consensus             TGTTGCCCCAAATGACAAAAGCGGGACATGAAGTTCATTCACAATGTGAGAAATTACGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS153C01+           TGCTATTCCAGAGGATTGTGGACCAATTGCACCCACTACATCTCTTTCCATCAGCTGCAA
JMFS102A07+           TGCTATTCCAGAGGATTGTGGACCAATTGCACCCACTACATCTCTTTCCATCAGCTGCAA
JMFS046H08+           TGCTATTCCAGAGGATTGTGGACCAATTGCACCCACTACATCTCTTTCCATCAGCTGCAA
JMFS154C06+           TGCTATTCCAGAGGATTGTGGACCAATTGCACCCACTACATCTCTTTCCATCAGCTGCAA
JMFS025H03+           TGCTATTCCAGAGGATTGTGGACCAATTGCACCCACTACATCTCTTTCCATCAGCTGCAA
JMFS068B07+           TGCTATTCCAGAGGATTGTGGACCAATTGCACCCACTACATCTCTTTCCATCAGCTGCAA
JMFS103F10+           TGCTATTCCAGAGGATTGTGGACCAATTGCACCCACTACATCTCTTTCCATCAGCTGCAA
JMFS086D08+           TGCTATTCCAGAGGATTGTGGACCAATTGCACCCACTACATCTCTTTCCATCAGCTGCAA
JMFS069H03+           TGCTATTCCAGAGGATTGTGGACCAATTGCACCCACTACATCTCTTTCCATCAGCTGCAA
                      ____________________________________________________________
consensus             TGCTATTCCAGAGGATTGTGGACCAATTGCACCCACTACATCTCTTTCCATCAGCTGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS153C01+           AGCATCAACAGTGCCAATGAATCCGCTGCAATTTGTATCTTGAACTATGAGGTTCAACGT
JMFS102A07+           AGCATCAACAGTGCCAATGAATCCGCTGCAATTTGTATCTTGAACTATGAGGTTCAACGT
JMFS046H08+           AGCATCAACAGTGCCAATGAATCCGCTGCAATTTGTATCTTGAACTATGAGGTTCAACGT
JMFS154C06+           AGCATCAACAGTGCCAATGAATCCGCTGCAATTTGTATCTTGAACTATGAGGTTCAACGT
JMFS025H03+           AGCATCAACAGTGCCAATGAATCCGCTGCAATTTGTATCTTGAACTATGAGGTTCAACGT
JMFS068B07+           AGCATCAACAGTGCCAATGAATCCGCTGCAATTTGTATCTTGAACTATGAGGTTCAACGT
JMFS103F10+           AGCATCAACAGTGCCAATGAATCCGCTGCAATTTGTATCTTGAACTATGAGGTTCAACGT
JMFS086D08+           AGCATCAACAGTGCCAATGAATCCGCTGCAATTTGTATCTTGAACTATGAGGTTCAACGT
JMFS069H03+           AGCATCAACAGTGCCAATGAATCCGCTGCAATTTGTATCTTGAACTATGAGGTTCAACGT
                      ____________________________________________________________
consensus             AGCATCAACAGTGCCAATGAATCCGCTGCAATTTGTATCTTGAACTATGAGGTTCAACGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS153C01+           GGTGCCACTAAGAATGCTCGAATCAGAATTCACATCATCCACAGCAGCTTTAATGGCTGG
JMFS102A07+           GGTGCCACTAAGAATGCTCGAATCAGAATTCACATCATCCACAGCAGCTTTAATGGCTGG
JMFS046H08+           GGTGCCACTAAGAATGCTCGAATCAGAATTCACATCATCCACAGCAGCTTTAATGGCTGG
JMFS154C06+           GGTGCCACTAAGAATGCTCGAATCAGAATTCACATCATCCACAGCAGCTTTAATGGCTGG
JMFS025H03+           GGTGCCACTAAGAATGCTCGAATCAGAATTCACATCATCCACAGCAGCTTTAATGGCTGG
JMFS068B07+           GGTGCCACTAAGAATGCTCGAATCAGAATTCACATCATCCACAGCAGCTTTAATGGCTGG
JMFS103F10+           GGTGCCACTAAGAATGCTCGAATCAGAATTCACATCATCCACAGCAGCTTTAATGGCTGG
JMFS086D08+           GGTGCCACTAAGAATGCTCGAATCAGAATTCACATCATCCACAGCAGCTTTAATGGCTGG
JMFS069H03+           GGTGCCACTAAGAATGCTCGAATCAGAATTCACATCATCCACAGCAGCTTTAATGGGTGG
                      ____________________________________________________________
consensus             GGTGCCACTAAGAATGCTCGAATCAGAATTCACATCATCCACAGCAGCTTTAATGGCTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS153C01+           CCTAGCAGACCGTCCAATAACTGAGTTCATCACGAACAAAGCTCCAATATTCACGACCCT
JMFS102A07+           CCTAGCAGACCGTCCAATAACTGAGTTCATCACGAACAAAGCTCCAATATTCACGACCCT
JMFS046H08+           CCTAGCAGACCGTCCAATAACTGAGTTCATCACGAACAAAGCTCCAATATTCACGACCCT
JMFS154C06+           CCTAGCAGACCGTCCAATAACTGAGTTCATCACGAACAAAGCTCCAATATTCACGACCCT
JMFS025H03+           CCTAGCAGACCGTCCAATAACTGAGTTCATCACGAACAAAGCTCCAATATTCACGACCCT
JMFS068B07+           CCTAGCAGACCGTCCAATAACTGAGTTCATCACGAACAAAGCTCCAATATTCACGACCCT
JMFS103F10+           CCTAGCAGACCGTCCAATAACTGAGTTCATCACGAACAAAGCTCCAATATTCACGACCCT
JMFS086D08+           CCTAGCAGACCGTCCAATAACTGAGTTCATCACGAACAAAGCTCCAATATTCACGACCCT
JMFS069H03+           CCTAGCAGACCGTCCAATAACTGAGTTCATCACGAACAAAGCTCCAATATTCACGACCCT
                      ____________________________________________________________
consensus             CCTAGCAGACCGTCCAATAACTGAGTTCATCACGAACAAAGCTCCAATATTCACGACCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS153C01+           CGGTCTGGAAGGAGCAGTTCCATTCTGGCCTCCTAAAACTGCCAAAGGCACCGATAAACA
JMFS102A07+           CGGTCTGGAAGGAGCAGTTCCATTCTGGCCTCCTAAAACTGCCAAAGGCACCGATAAACA
JMFS046H08+           CGGTCTGGAAGGAGCAGTTCCATTCTGGCCTCCTAAAACTGCCAAAGGCACCGATAAACA
JMFS154C06+           CGGTCTGGAAGGAGCAGTTCCATTCTGGCCTCCTAAAACTGCCAAAGGCACCGATAAACA
JMFS025H03+           CGGTCTGGAAGGAGCAGTTCCATTCTGGCCTCCTAAAACTGCCAAAGGCACCGATAAACA
JMFS068B07+           CGGTCTGGAAGGAGCAGTTCCATTCTGGCCTCCTAAAACTGCCAAAGGCACCGATAAACA
JMFS103F10+           CGGTCTGGAAGGAGCAGTTCCATTCTGGCCTCCTAAAACTGCCAAAGGCACCGATAAACA
JMFS086D08+           CGGTCTGGAAGGAGCAGTTCCATTCTGGCCTCCTAAAACTGCCAAAGGCACCGATAAACA
JMFS069H03+           CGGTCTGGAAGGAGCAGTTCCATTCTGGCCTCCTAAAACTGCCAAAGGCACCGATAAACA
                      ____________________________________________________________
consensus             CGGTCTGGAAGGAGCAGTTCCATTCTGGCCTCCTAAAACTGCCAAAGGCACCGATAAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS153C01+           ACAAATTACCAATAGAAACCTGCTCTTCAGATGTACATGAGCCTCCATCTCTACTAAAGA
JMFS102A07+           ACAAATTACCAATAGAAACCTGCTCTTCAGATGTACATGAGCCTCCATCTCTACTAAAGA
JMFS046H08+           ACAAATTACCAATAGAAACCTGCTCTTCAGATGTACATGAGCCTCCATCTCTACTAAAGA
JMFS154C06+           ACAAATTACCAATAGAAACCTGCTCTTCAGATGTACATGAGCCTCCATCTCTACTAAAGA
JMFS025H03+           ACAAATTACCAATAGAAACCTGCTCTTCAGATGTACATGAGCCTCCATCTCTACTAAAGA
JMFS068B07+           ACAAATTACCAATAGAAACCTGCTCTTCAGATGTACATGAGCCTCCATCTCTACTAAAGA
JMFS103F10+           ACAAATTACCAATAGAAACCTGCTCTTCAGATGTACATGAGCCTCCATCTCTACTAAAGA
JMFS086D08+           ACAAATTACCAATAGAAACCTGCTCTTCAGATGTACATGAGCCTCCATCTCTACTAAAGA
JMFS069H03+           ACAAATTACCAATAGAAACCTGCTCTTCAGATGTACATGAGCCTCCATCTCTACTAAAGA
                      ____________________________________________________________
consensus             ACAAATTACCAATAGAAACCTGCTCTTCAGATGTACATGAGCCTCCATCTCTACTAAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS153C01+           GTCAATTCACACCACCATGTCTCAAGAATTAA                            
JMFS102A07+           GTCAATTCACACCACCATGTCTCAAGAATTAAGCCCCT                      
JMFS046H08+           GTCAATTCACACCACCATGTCTCAAGAATTAAGCCC---CTTGGTATCCACTCCTGAGCA
JMFS154C06+           GTCAATTCACACCACCATGTCTCAAGAATTAAGCCCCTGCTTGGTATCCACTCCTGAGCA
JMFS025H03+           GTCAATTCACACCACCATGTCTCAAGAATTAAGCCCCTGCTTGGTATCCACTCCTGAGCA
JMFS068B07+           GTCAATTCACACCACCATGTCTCAAGAATTAAGCCCCTGCTTGGTATCCACTCCTGAGCA
JMFS103F10+           GTCAATTCACACCACCATGTCTCAAGAATTAAGCCC---CTTGGTATCC           
JMFS086D08+           GTCAATTCACACCACCATGTCTCAAGAATTAAGCCC---CTTGGTATCCACTCCTGAGCA
JMFS069H03+           GTCAATTCACACCACCATGTCTCAAGAATTAAGCCC---CTTGGTATCCACTCCTGAGCA
                      ____________________________________________________________
consensus             GTCAATTCACACCACCATGTCTCAAGAATTAAGCCCCT-CTTGGTATCCACTCCTGAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS046H08+           GTTGAACGCAACCTCTTACTCAGAGGATTCTC                            
JMFS154C06+           GTTGAACGCAACCTCTTACTCAGAGGATTCTCCCCAGAATATATACTTGTG         
JMFS025H03+           GTTGAACGCAACCTCTTACTCAGAGGATTCTCCCCAGAATATATACTTGTGT        
JMFS068B07+           GTTGAACGCAACCTCTTACTCAGAGGATTCTCCCCAGAATATATACTTGTGT        
JMFS086D08+           GTTGAACGCAACCTCTTACTCAGAGGATTCTCCCCAGAATATATACTTGTGT        
JMFS069H03+           GTTGAACGCAACCTCTTACTCAGAGGATTCTCCCCAGAATATATACTTGTGTGTGGACAC
                      ____________________________________________________________
consensus             GTTGAACGCAACCTCTTACTCAGAGGATTCTCCCCAGAATATATACTTGTGTGTGGACAC