Contig 004801:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN041C20Sequence638004801 (2)ref|XP_010039825.1|2e-28PREDICTED: probable DNA helicase MCM9 isoform X2 [Eucalyptus grandis]
JMFS057E02Sequence613004801 (2)ref|XP_004172465.1|5e-75PREDICTED: DNA helicase MCM9-like, partial [Cucumis sativus]

Alignment

This contig is upended


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JMFN041C20+                                                       GAATGGGTATAATCGC
                      ____________________________________________________________
consensus                                                         GAATGGGTATAATCGC
 
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JMFN041C20+           TGCAACCCATGCTGCTCTCAACATGGTAACCAGCCCCAGCTCCATGGTGAAGGTAAAACC
                      ____________________________________________________________
consensus             TGCAACCCATGCTGCTCTCAACATGGTAACCAGCCCCAGCTCCATGGTGAAGGTAAAACC
 
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JMFN041C20+           CTACTCAGTAGTACAACTATATATCCTATTAAGCAATATCTTCTCAGTCTACTATCAACT
                      ____________________________________________________________
consensus             CTACTCAGTAGTACAACTATATATCCTATTAAGCAATATCTTCTCAGTCTACTATCAACT
 
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JMFN041C20+           AACTCTGTGCTGGTCTGCCCAGCAATTACTCACTCAAGGTCCCTCGAGCTAATGGTTGTT
                      ____________________________________________________________
consensus             AACTCTGTGCTGGTCTGCCCAGCAATTACTCACTCAAGGTCCCTCGAGCTAATGGTTGTT
 
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JMFN041C20+           TTTGCAGTGGATATCTCTTTCTGCCATTCCTGTATTTCCTTTTCACAATCTTCTGATTTG
                      ____________________________________________________________
consensus             TTTGCAGTGGATATCTCTTTCTGCCATTCCTGTATTTCCTTTTCACAATCTTCTGATTTG
 
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JMFN041C20+           GATTTCCACGTTCCTGGTATTCTTCATTTTTACTGCATTTTGAGTTGCTGATCGTCTTTA
                      ____________________________________________________________
consensus             GATTTCCACGTTCCTGGTATTCTTCATTTTTACTGCATTTTGAGTTGCTGATCGTCTTTA
 
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JMFN041C20+           GAGTTGGTAATAGCTTGAAATAACTTTTTCAGCCTCCTTTGTGAGAACTGGTTGAAAATC
                      ____________________________________________________________
consensus             GAGTTGGTAATAGCTTGAAATAACTTTTTCAGCCTCCTTTGTGAGAACTGGTTGAAAATC
 
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JMFN041C20+           TCTCTTCACAAAGTGGATACCGCCTAAGCATAGGAAGTGGCCAGATATCGTGCAGAATCT
                      ____________________________________________________________
consensus             TCTCTTCACAAAGTGGATACCGCCTAAGCATAGGAAGTGGCCAGATATCGTGCAGAATCT
 
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JMFN041C20+           CCTCAGAATTGCAGCTCTTTGTTTGTGTTGGTTAAATTATGGAAAAAATGGGAATTCTCA
                      ____________________________________________________________
consensus             CCTCAGAATTGCAGCTCTTTGTTTGTGTTGGTTAAATTATGGAAAAAATGGGAATTCTCA
 
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JMFN041C20+           ATAGGATTCAGCTCTTTGTTTGTGTCTTGGCAACACTAATAGTTTGCTGCTCTATAGCTT
JMFS057E02+                                                          TGCTCTATAGCTT
                      ____________________________________________________________
consensus             ATAGGATTCAGCTCTTTGTTTGTGTCTTGGCAACACTAATAGTTTGCTGCTCTATAGCTT
 
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JMFN041C20+           CATGGATGGTCACCCTATCATGTTCCTTCATGCTATCAAATTCATCAATGCAACAAAGAC
JMFS057E02+           CATGGATGGTCACCCTATCATGTTCCTTCATGCTATCAAATTCATCAATGCAACAAAGAC
                      ____________________________________________________________
consensus             CATGGATGGTCACCCTATCATGTTCCTTCATGCTATCAAATTCATCAATGCAACAAAGAC
 
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JMFN041C20+           CACCATCAGCTGATACAAGAGC                                      
JMFS057E02+           CACCATCAGCTGATACAAGAGCACCAGCTTCCAGAATCCACTCCCCCCCATCTCTAACTG
                      ____________________________________________________________
consensus             CACCATCAGCTGATACAAGAGCACCAGCTTCCAGAATCCACTCCCCCCCATCTCTAACTG
 
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JMFS057E02+           CAGTAACAGTTAACCCATCACTTGTGCTTCCCAACCCTGTAGCAATTACAGCTCTATTGC
                      ____________________________________________________________
consensus             CAGTAACAGTTAACCCATCACTTGTGCTTCCCAACCCTGTAGCAATTACAGCTCTATTGC
 
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JMFS057E02+           TCAATTTTGCAGCAAACTTCAAAAATTGTGACTTCCCAGTACCAGGATCACCAACAAGAA
                      ____________________________________________________________
consensus             TCAATTTTGCAGCAAACTTCAAAAATTGTGACTTCCCAGTACCAGGATCACCAACAAGAA
 
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JMFS057E02+           GCAAATGAGAACCCCCCCTTACTTTTGTTCCAGAAGCATCAATATGTGCAACTCCTCCAA
                      ____________________________________________________________
consensus             GCAAATGAGAACCCCCCCTTACTTTTGTTCCAGAAGCATCAATATGTGCAACTCCTCCAA
 
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JMFS057E02+           TAAGTGTCAATGTGACTTTTAAAGGGGAACCCTCAAAATCTTGCCAAAACTGTTTGAATT
                      ____________________________________________________________
consensus             TAAGTGTCAATGTGACTTTTAAAGGGGAACCCTCAAAATCTTGCCAAAACTGTTTGAATT
 
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JMFS057E02+           TCAGGATAATGTCATCATGAATGTCTATTTATGACTTTAATTCATTTATTCTCCTTGCGG
                      ____________________________________________________________
consensus             TCAGGATAATGTCATCATGAATGTCTATTTATGACTTTAATTCATTTATTCTCCTTGCGG
 
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JMFS057E02+           CGACCGGTGAGAATGTCGGCAACCGGTGAGCTTGCGGCAATGGGCGACGGGCGAGACCGG
                      ____________________________________________________________
consensus             CGACCGGTGAGAATGTCGGCAACCGGTGAGCTTGCGGCAATGGGCGACGGGCGAGACCGG
 
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JMFS057E02+           CGGCGACCAGCGAACGGCGATGGCAGCAGAGAATAGCGCAGCAGCGACGAGAGTAGCAGA
                      ____________________________________________________________
consensus             CGGCGACCAGCGAACGGCGATGGCAGCAGAGAATAGCGCAGCAGCGACGAGAGTAGCAGA
 
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JMFS057E02+           GAAGACGATGGAGGCGAGCGGCGAGCGAATGACGATGGACGACCGGCGGAGTGGAGATGG
                      ____________________________________________________________
consensus             GAAGACGATGGAGGCGAGCGGCGAGCGAATGACGATGGACGACCGGCGGAGTGGAGATGG