Contig 004800:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS045A10+                                                                   CTTG
                      ____________________________________________________________
consensus                                                                     CTTG
 
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JMFS045A10+           AACGAGTCCTTAGTTGCATAATCAGAACACGAACGCATAAGCCTCGTGGACGCCCAATCT
                      ____________________________________________________________
consensus             AACGAGTCCTTAGTTGCATAATCAGAACACGAACGCATAAGCCTCGTGGACGCCCAATCT
 
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JMFS045A10+           TCAATCTTACCCACACCGNGATCACTAATGTTTCCGCTTTTCATAAACTCAACACCCTCT
                      ____________________________________________________________
consensus             TCAATCTTACCCACACCGNGATCACTAATGTTTCCGCTTTTCATAAACTCAACACCCTCT
 
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JMFS045A10+           TCCTCAGACATCTTCTTGGTTTCCTCATTCATATCACTATCGATAAACGGTTTCAAAAAC
                      ____________________________________________________________
consensus             TCCTCAGACATCTTCTTGGTTTCCTCATTCATATCACTATCGATAAACGGTTTCAAAAAC
 
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JMFS045A10+           TGCACCTCTTCTTTATCAGTAACCCGACAATCAAAATGAAAATGGGCTTGAAGATCAAAA
                      ____________________________________________________________
consensus             TGCACCTCTTCTTTATCAGTAACCCGACAATCAAAATGAAAATGGGCTTGAAGATCAAAA
 
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JMFS045A10+           TCGGAGTTGTCCCTCTTCATCGACAGGCTCTCATCATGCTCATCTTCCCCTTCGTAAGCT
                      ____________________________________________________________
consensus             TCGGAGTTGTCCCTCTTCATCGACAGGCTCTCATCATGCTCATCTTCCCCTTCGTAAGCT
 
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JMFS045A10+           ACCTCTTCCGCCTCCCCTTTCATGGGACTTTCTACCTTGCTCTCTGAACTCCCAGAGATA
JMSF052H04+                                                      CTGAACTCCCAGAGATA
                      ____________________________________________________________
consensus             ACCTCTTCCGCCTCCCCTTTCATGGGACTTTCTACCTTGCTCTCTGAACTCCCAGAGATA
 
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JMFS045A10+           CCAAAAGACACCGGAACAATCACAGAAGTCGATTTCAATTCATCATCTTTTTTGGACGAT
JMSF052H04+           CCAAAAGACACCGGAACAATCACAGAAGTCGATTTCAATTCATCATCTTTTTTGGACGAT
JMSF052H03+                                                  TCATCATCTTTTTTGGANGAT
                      ____________________________________________________________
consensus             CCAAAAGACACCGGAACAATCACAGAAGTCGATTTCAATTCATCATCTTTTTTGGACGAT
 
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JMFS045A10+           TTCCCTGGAACTGGAACATCACCTTTTTCAGGCACATCATCTCTTTTCAATGACTTCTTA
JMSF052H04+           TTCCCTGGAACTGGAACATCACCTTTTTCAGGCACATCATCTCTTTTCAATGACTTCTTA
JMSF052H03+           TTCCCTGGAACTGGAACATCACCTTTNTCAGGCACATCATCTCTTTTCAATGACTTNTTA
                      ____________________________________________________________
consensus             TTCCCTGGAACTGGAACATCACCTTTTTCAGGCACATCATCTCTTTTCAATGACTTCTTA
 
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JMFS045A10+           TCACCCGTATCCTTCTTCCCCCCACCAAGACCACAGAGGAAACTGCTGCAGATTGCCANT
JMSF052H04+           TCACCCGTATCCTTCTTCCCCCCACCAAGACCACAGAGGAAACTGCTGCAGATTGCCATT
JMSF052H03+           TCACCCGTATCCTTCTTCCCCCCACCAAGACCACAGAGGAAACTGCTGCAGATTGCCATT
JMFS056A04+                                               AGGAAACTGCTGCAGATTGCCATT
                      ____________________________________________________________
consensus             TCACCCGTATCCTTCTTCCCCCCACCAAGACCACAGAGGAAACTGCTGCAGATTGCCATT
 
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JMFS045A10+           NTTNNANGATGATGAAGATGAAGATGA                                 
JMSF052H04+           TTTTTATGATGATGAAGATGAAGATGAACTGACAGCTCCAGAAAAACACAAAATTCAATA
JMSF052H03+           TTTTTATGATGATGAAGATGAAGATGAACTGNCAGCTCCAGAAAAACACAAAATTCAATA
JMFS056A04+           TTTTTATGATGATGAAGATGAAGATGAACTGACAGCTCCAGAAAAACACAAAATTCAATA
                      ____________________________________________________________
consensus             TTTTTATGATGATGAAGATGAAGATGAACTGACAGCTCCAGAAAAACACAAAATTCAATA
 
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JMSF052H04+           TAATGGAGACTCCTTCTTCCCCAATTACTCCTCTAACCGCAGAAGAATCTGAATTGAATA
JMSF052H03+           TAANGGAGACTCCTTNTTCCCCAATTACTCCTCTAACCGCAGAAGAATCTGAATTGAATA
JMFS056A04+           TAATGGAGACTCCTTCTTCCCCAATTACTCCTCTAACCGCAGAAGAATCTGAATTGAATA
                      ____________________________________________________________
consensus             TAATGGAGACTCCTTCTTCCCCAATTACTCCTCTAACCGCAGAAGAATCTGAATTGAATA
 
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JMSF052H04+           AGCAGCTCACATCACTGAAACCAGATTACAGCCCAGATTTAACCAAAATTAGCCGTAATC
JMSF052H03+           AGCAGCTCACATCACTGAAACCAGATTNCAGCCCAGATTTAACCAAAATTAGCCGTAATC
JMFS056A04+           AGCAGCTCACATCACTGAAACCAGATTACAGCCCAGATTTAACCAAAATTAGCCGTAATC
                      ____________________________________________________________
consensus             AGCAGCTCACATCACTGAAACCAGATTACAGCCCAGATTTAACCAAAATTAGCCGTAATC
 
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JMSF052H04+           AACTGGCAAGCGCCAAAGCAGCGATGGGGACCAAATCGACAAGCACGAACACGAATGAAT
JMSF052H03+           AACTGGCAAGCGCCAAAGCAGCGATGGGGACCAAATCGACAAGCACGAACACGAATGAAT
JMFS056A04+           AACTGGCAAGCGCCAAAGCAGCGATGGGGACCAAATCGACAAGCACGAACACGAATGAAT
                      ____________________________________________________________
consensus             AACTGGCAAGCGCCAAAGCAGCGATGGGGACCAAATCGACAAGCACGAACACGAATGAAT
 
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JMSF052H04+           GCAACCAAGTACTGAGATTTCAAGATTTGGTTTCCTGGCTCCAACCCTAGCCCGGGAAGA
JMSF052H03+           GCAACCAAGTACTGAGATTTCAAGATTTGGTTTCCTGGCTCCAACCCTAGCCCGGGAAGA
JMFS056A04+           GCAACCAAGTACTGAGATTTCAAGATTTGGTTTCCTGGCTCCAACCCTAGCCCGGGAAGA
                      ____________________________________________________________
consensus             GCAACCAAGTACTGAGATTTCAAGATTTGGTTTCCTGGCTCCAACCCTAGCCCGGGAAGA
 
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JMSF052H04+           TGACTTCACTGCAGTGTCGGCCAGACTGTTTAGCTCTGATGCTTCTATCCAGAAGCTTCA
JMSF052H03+           TGACTTCACTGCAGTGTCGGCCAGACTGTTTAGCTCTGATGNTTCTATCCAGAAGCTTCA
JMFS056A04+           TGACTTCACTGCAGTGTCGGCCAGACTGTTTAGCTCTGATGCTTCTATCCAGAAGCTTCA
                      ____________________________________________________________
consensus             TGACTTCACTGCAGTGTCGGCCAGACTGTTTAGCTCTGATGCTTCTATCCAGAAGCTTCA
 
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JMSF052H04+           CCAATACTTCCCCT                                              
JMSF052H03+           CCAATACTTCCCCT                                              
JMFS056A04+           CCAATACTTCCCCTTGTTCCCTGTAGGAAAAAATGGCTTTAAACACTGATCCATTAATTT
                      ____________________________________________________________
consensus             CCAATACTTCCCCTTGTTCCCTGTAGGAAAAAATGGCTTTAAACACTGATCCATTAATTT
 
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JMFS056A04+           CTCCCGGAGCGCATCAATTCTGGGAAAAGACGAATCTTTTACTGGATTATTACAATCCTA
                      ____________________________________________________________
consensus             CTCCCGGAGCGCATCAATTCTGGGAAAAGACGAATCTTTTACTGGATTATTACAATCCTA
 
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JMFS056A04+           ATATCTTTTGGGATGAAAAAGTAGAGAACCCATTCAGAACAAGAAATTAAAGTCAAAAGA
                      ____________________________________________________________
consensus             ATATCTTTTGGGATGAAAAAGTAGAGAACCCATTCAGAACAAGAAATTAAAGTCAAAAGA
 
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JMFS056A04+           AGAATAAAAAAACTGTGGCCAGTAGGCAGTAGGTGGTAGTGGCGTACATACAGAAGATTG
                      ____________________________________________________________
consensus             AGAATAAAAAAACTGTGGCCAGTAGGCAGTAGGTGGTAGTGGCGTACATACAGAAGATTG