Contig 004796:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN007N02Sequence301004796 (4)emb|CAF74935.1|3e-22zinc finger DNA-binding protein [Catharanthus roseus]
JMFN046E02Sequence290004796 (4)emb|CAF74935.1|2e-22zinc finger DNA-binding protein [Catharanthus roseus]
JMFN046I05Sequence302004796 (4)emb|CAF74935.1|3e-22zinc finger DNA-binding protein [Catharanthus roseus]
JMFS048A02Sequence306004796 (4)emb|CAF74935.1|2e-22zinc finger DNA-binding protein [Catharanthus roseus]

Alignment

This contig is upended


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JMFN046E02+                                                                   CGGA
JMFN007N02+                                                                 GCCGGA
JMFN046I05+                                                                   CGGA
JMFS048A02+                                                                   CGGA
                      ____________________________________________________________
consensus                                                                   GCCGGA
 
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JMFN046E02+           GCCTCCACCGCCTTAGCCGACGACCCACCACCGCTGCGCGCGAGCATAATAAGGCAGAGC
JMFN007N02+           GCCTCCACCGCCTTAGCCGACGACCCACCACCGCTGCGCGCGAGCATAATAAGGCAGAGC
JMFN046I05+           GCCTCCACCGCCTTAGCCGACGACCCACCACCGCTGCGCGCGAGCATAATAAGGCAGAGC
JMFS048A02+           GCCTCCACCGCCTTAGCCGACGACCCACCACCGCTGCGCGCGAGCATAATAAGGCAGAGC
                      ____________________________________________________________
consensus             GCCTCCACCGCCTTAGCCGACGACCCACCACCGCTGCGCGCGAGCATAATAAGGCAGAGC
 
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JMFN046E02+           GCCAAATACTCCTCCTCAGTAGGCTGACGCTCCACGCTGCGCGGCCGCTTGGATCGCTTC
JMFN007N02+           GCCAAATACTCCTCCTCAGTAGGCTGACGCTCCACGCTGCGCGGCCGCTTGGATCGCTTC
JMFN046I05+           GCCAAATACTCCTCCTCAGTAGGCTGACGCTCCACGCTGCGCGGCCGCTTGGATCGCTTC
JMFS048A02+           GCCAAATACTCCTCCTCAGTAGGCTGACGCTCCACGCTGCGCGGCCGCTTGGATCGCTTC
                      ____________________________________________________________
consensus             GCCAAATACTCCTCCTCAGTAGGCTGACGCTCCACGCTGCGCGGCCGCTTGGATCGCTTC
 
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JMFN046E02+           CCCTTCGCCCACTGCTGATCAAGGTAGCTCAGGCTCGCCGGATCCTCGAACTGAAACACC
JMFN007N02+           CCCTTCGCCCACTGCTGATCAAGGTAGCTCAGGCTCGCCGGATCCTCGAACTGAAACACC
JMFN046I05+           CCCTTCGCCCACTGCTGATCAAGGTAGCTCAGGCTCGCCGGATCCTCGAACTGAAACACC
JMFS048A02+           CCCTTCGCCCACTGCTGATCAAGGTAGCTCAGGCTCGCCGGATCCTCGAACTGAAACACC
                      ____________________________________________________________
consensus             CCCTTCGCCCACTGCTGATCAAGGTAGCTCAGGCTCGCCGGATCCTCGAACTGAAACACC
 
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JMFN046E02+           GACGCCCGAGGCGTGGTCGGAGAATTCAAAGCTTCAAGAGCCATATCAATCTTTCTTCTT
JMFN007N02+           GACGCCCGAGGCGTGGTCGGAGAATTCAAAGCTTCAAGAGCCATATCAATCTTTCTTCTT
JMFN046I05+           GACGCCCGAGGCGTGGTCGGAGAATTCAAAGCTTCAAGAGCCATATCAATCTTTCTTCTT
JMFS048A02+           GACGCCCGAGGCGTGGTCGGAGAATTCAAAGCTTCAAGAGCCATATCAATCTTTCTTCTT
                      ____________________________________________________________
consensus             GACGCCCGAGGCGTGGTCGGAGAATTCAAAGCTTCAAGAGCCATATCAATCTTTCTTCTT
 
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JMFN046E02+           GTTTCAAGAATCAAGAACACTCAGAGAGAAAGAGAGAGAGAGAT                
JMFN007N02+           GTTTCAAGAATCAAGAACACTCAGAGAGAAAGAGAGAGAGAGATGTGAAGAGAAA     
JMFN046I05+           GTTTCAAGAATCAAGAACACTCAGAGAGAAAGAGAGAGAGAGATGTGAAGAGAAA     
JMFS048A02+           GTTTCAAGAATCAAGAACACTCAGAGAGAAAGAGAGAGAGAGATGTGAAGAGAAAGTTGA
                      ____________________________________________________________
consensus             GTTTCAAGAATCAAGAACACTCAGAGAGAAAGAGAGAGAGAGATGTGAAGAGAAAGTTGA