clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFS045C02 | Sequence | 453 | 004794 (6) | ref|XP_003597229.1| | 4e-46 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Medicago truncatula] | |||||
JMFS048A04 | Sequence | 437 | 004794 (6) | ref|XP_003597229.1| | 5e-43 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Medicago truncatula] | |||||
JMSF013J02 | Sequence | 486 | 003606 (6) | ref|XP_009592136.1| | 1e-09 | PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic | 663 | 004794 (6) | gb|EPS62642.1| | 1e-101 | hypothetical protein M569_12144, partial [Genlisea aurea] |
JMSF027L21 | Sequence | 655 | 003606 (6) | ref|XP_009592136.1| | 1e-79 | PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic | 666 | 004794 (6) | gb|EPS62642.1| | 8e-102 | hypothetical protein M569_12144, partial [Genlisea aurea] |
JMSF034B06 | Sequence | 689 | 003606 (6) | emb|CDP07116.1| | 5e-58 | unnamed protein product [Coffea canephora] | 708 | 004794 (6) | ref|XP_009797237.1| | 5e-122 | PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic- |
JMSF051H22 | Sequence | 693 | 003606 (6) | ref|XP_009592136.1| | 8e-94 | PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic | 710 | 004794 (6) | gb|EPS62642.1| | 9e-98 | hypothetical protein M569_12144, partial [Genlisea aurea] |
This contig is upended
. : . : . : . : . : . :
rJMSF034B06+ TGAAGAGTTCTGATGCTACATTGGTTCTTCACAATCTCCCGTATTCTGAAG
____________________________________________________________
consensus TGAAGAGTTCTGATGCTACATTGGTTCTTCACAATCTCCCGTATTCTGAAG
. : . : . : . : . : . :
rJMSF034B06+ AAAAAATTAGCCGAGTTCATGCTGCCAGGAGGCTTTTTGAATATCTCTCAGAAAATTCCT
rJMSF013J02+ CTCAGAAAATTCCT
rJMSF027L21+ CTCAGAAAATTCCT
____________________________________________________________
consensus AAAAAATTAGCCGAGTTCATGCTGCCAGGAGGCTTTTTGAATATCTCTCAGAAAATTCCT
. : . : . : . : . : . :
rJMSF034B06+ TGGATTTTCCAGTAATTCATCATATAGAATTTCCCAAAGATATTCACAGGGATGATTTAG
rJMSF013J02+ NGGATTTTCCAGTAATTCATCATATAGAATTTCCCAAAGATATTCACAGGGATGATTTAG
rJMSF027L21+ TGGATTTTCCAGTAATTCATCATATAGAATTTCCCAAAGATATTCACAGGGATGATTTAG
rJMSF051H22+ GGATTTTCCAGTAATTCATCATATAGAATTTCCCAAAGATATTCACAGGGATGATTTAG
____________________________________________________________
consensus TGGATTTTCCAGTAATTCATCATATAGAATTTCCCAAAGATATTCACAGGGATGATTTAG
. : . : . : . : . : . :
rJMSF034B06+ TAATTAGTGCCGGGAGCAATGCTGGAACCCTCTTGGTAGACGGTCTTGGAGATGGTGTCC
rJMSF013J02+ TAATTAGTGCCGGGAGCAATGCTGGAACCCTCTTGGTAGACGGTCTTGGAGATGGTGTCC
rJMSF027L21+ TAATTAGTGCCGGGAGCAATGCTGGAACCCTCTTGGTAGACGGTCTTGGAGATGGTGTCC
rJMSF051H22+ TAATTAGTGCCGGGAGCAATGCTGGAACCCTCTTGGTAGACGGTCTTGGAGATGGTGTCC
____________________________________________________________
consensus TAATTAGTGCCGGGAGCAATGCTGGAACCCTCTTGGTAGACGGTCTTGGAGATGGTGTCC
. : . : . : . : . : . :
rJMSF034B06+ TGTTAGAAGCCCCAGACAGTGATTTTGATTTTATTAGGAATACATCTTTCAATCTTCTAC
rJMSF013J02+ TGTTAGAAGCCCCAGACAGTGATTTTGATTTTATTAGGAATACATCTTTCAATCTTCTAC
rJMSF027L21+ TGTTAGAAGCCCCAGACAGTGATTTTGATTTTATTAGGAATACATCTTTCAATCTTCTAC
rJMSF051H22+ TGTTAGAAGCCCCAGACAGTGATTTTGATTTTATTAGGAATACATCTTTCAATCTTCTAC
____________________________________________________________
consensus TGTTAGAAGCCCCAGACAGTGATTTTGATTTTATTAGGAATACATCTTTCAATCTTCTAC
. : . : . : . : . : . :
rJMSF034B06+ AAGGATGCAGAATGAGGAATACTAAAACGGAGTATGTGTCATGCCCATCATGTGGCAGAA
rJMSF013J02+ AAGGATGCAGAATGAGGAATACTAAAACGGAGTATGTGTCATGCCCATCATGTGGCAGAA
rJMSF027L21+ AAGGATGCAGAATGAGGAATACTAAAACGGAGTATGTGTCATGCCCATCATGTGGCAGAA
rJMSF051H22+ AAGGATGCAGAATGAGGAATACTAAAACGGAGTATGTGTCATGCCCATCATGTGGCAGAA
____________________________________________________________
consensus AAGGATGCAGAATGAGGAATACTAAAACGGAGTATGTGTCATGCCCATCATGTGGCAGAA
. : . : . : . : . : . :
rJMSF034B06+ CTCTTTTCGACCTTCAAGAGATAAGTGCAGAGATTAGGGAGAAGACGTCGCACTTGCCTG
rJMSF013J02+ CTCTTTTCGACCTTCAAGAGATAAGTGCAGAGATTAGGGAGAAGACGTCGCACTTGCCTG
rJMSF027L21+ CTCTTTTCGACCTTCAAGAGATAAGTGCAGAGATTAGGGAGAAGACGTCGCACTTGCCTG
rJMSF051H22+ CTCTTTTCGACCTTCAAGAGATAAGTGCAGAGATTAGGGAGAAGACGTCGCACTTGCCTG
JMFS048A04- GACGTCGCACTTGCCTG
JMFS045C02- CAGAGATTAGGGAGAAGACGTCGCACTTGCCTG
____________________________________________________________
consensus CTCTTTTCGACCTTCAAGAGATAAGTGCAGAGATTAGGGAGAAGACGTCGCACTTGCCTG
. : . : . : . : . : . :
rJMSF034B06+ GTGTTTCGATTGCTATTATGGGCTGCATTGTCAATGGACCTGGGGAGATGGCTGATGCGG
rJMSF013J02+ GTGTTTCGATTGCTATTATGGGCTGCATTGTCAATGGACCTGGGGAGATGGCTGATGCGG
rJMSF027L21+ GTGTTTCGATTGCTATTATGGGCTGCATTGTCAATGGACCTGGGGAGATGGCTGATGCGG
rJMSF051H22+ GTGTTTCGATTGCTATTATGGGCTGCATTGTCAATGGACCTGGGGAGATGGCTGATGCGG
JMFS048A04- GTGTTTCGATTGCTATTATGGGCTGCATTGTCAATGGACCTGGGGAGATGGCTGATGCGG
JMFS045C02- GTGTTTCGATTGCTATTATGGGCTGCATTGTCAATGGACCTGGGGAGATGGCTGATGCGG
____________________________________________________________
consensus GTGTTTCGATTGCTATTATGGGCTGCATTGTCAATGGACCTGGGGAGATGGCTGATGCGG
. : . : . : . : . : . :
rJMSF034B06+ ACTTTGGGTATGTTGGGGGTGCTCCTGGGAAGATTGATCTTTATGTCGGAAAGACTGTTG
rJMSF013J02+ ACTTTGGGTATGTTGGGGGTGCTCCTGGGAAGATTGATCTTTATGTCGGAAAGACTGTTG
rJMSF027L21+ ACTTTGGGTATGTTGGGGGTGCTCCTGGGAAGATTGATCTTTATGTCGGAAAGACTGTTG
rJMSF051H22+ ACTTTGGGTATGTTGGGGGTGCTCCTGGGAAGATTGATCTTTATGTCGGAAAGACTGTTG
JMFS048A04- ACTTTGGGTATGTTGGGGGTGCTCCTGGGAAGATTGATCTTTATGTCGGAAAGACTGTTG
JMFS045C02- ACTTTGGGTATGTTGGGGGTGCTCCTGGGAAGATTGATCTTTATGTCGGAAAGACTGTTG
____________________________________________________________
consensus ACTTTGGGTATGTTGGGGGTGCTCCTGGGAAGATTGATCTTTATGTCGGAAAGACTGTTG
. : . : . : . : . : . :
rJMSF034B06+ TGAAGCGGGCCATTGCAATGGACCAAGCTACAGATGCCTTGATCGACCTAATTAAAGAAC
rJMSF013J02+ TGAAGCGGGCCATTGCAATGGACCAAGCTACAGATGCCTTGATCGACCTAATTAAAGAAC
rJMSF027L21+ TGAAGCGGGCCATTGCAATGGACCAAGCTACAGATGCCTTGATCGACCTAATTAAAGAAC
rJMSF051H22+ TGAAGCGGGCCATTGCAATGGACCAAGCTACAGATGCCTTGATCGACCTAATTAAAGAAC
JMFS048A04- TGAAGCGGGCCATTGCAATGGACCAAGCTACAGATGCCTTGATCGACCTAATTAAAGAAC
JMFS045C02- TGAAGCGGGCCATTGCAATGGACCAAGCTACAGATGCCTTGATCGACCTAATTAAAGAAC
____________________________________________________________
consensus TGAAGCGGGCCATTGCAATGGACCAAGCTACAGATGCCTTGATCGACCTAATTAAAGAAC
. : . : . : . : . : . :
rJMSF034B06+ ATGGCCGCTGGGTGGATCCTCCAACAGAAGAGTAATATCACCATTTGATGTTTACCCTAT
rJMSF013J02+ ATGGCCGCTGGGTGGATCCTCCAACAGAAGAGTAATATCACCATTTGATGTTTACCCTAT
rJMSF027L21+ ATGGCCGCTGGGTGGATCCTCCAACAGAAGAGTAATATCACCATTTGATGTTTACCCTAT
rJMSF051H22+ ATGGCCGCTGGGTGGATCCTCCAACAGAAGAGTAATATCACCATTTGATGTTTACCCTAT
JMFS048A04- ATGGCCGCTGGGTGGATCCTCCAACAGAAGAGTAATATCACCATTTGATGTTTACCCTAT
JMFS045C02- ATGGCCGCTGGGTGGATCCTCCAACAGAAGAGTAATATCACCATTTGATGTTTACCCTAT
____________________________________________________________
consensus ATGGCCGCTGGGTGGATCCTCCAACAGAAGAGTAATATCACCATTTGATGTTTACCCTAT
. : . : . : . : . : . :
rJMSF034B06+ CAAACTAATATTAGTCCCTATTATGCATATGTATCAGCAAGAATGTTTATGTATATC
rJMSF013J02+ CAAACTAATATTAGTCCCTATTATGCATATGTATCAGCAAGAATGTTTATGTATATCACG
rJMSF027L21+ CAAACTAATATTAGTCCCTATTATGCATATGTATCAGCAAGAATGTTTATGTATATCACG
rJMSF051H22+ CAAACTAATATTAGTCCCTATTATGCATATGTATCAGCAAGAATGTTTATGTATATCACG
JMFS048A04- CAAACTAATATTAGTCCCTATTATGCATATGTATCAGCAAGAATGTTTATGTATATCACG
JMFS045C02- CAAACTAATATTAGTCCCTATTATGCATATGTATCAGCAAGAATGTTTATGTATATCACG
____________________________________________________________
consensus CAAACTAATATTAGTCCCTATTATGCATATGTATCAGCAAGAATGTTTATGTATATCACG
. : . : . : . : . : . :
rJMSF013J02+ AATTATTGGGAATCACTAGTCATTTCCATTA
rJMSF027L21+ AATTATTGGGAATCACTAGTCATTTCCATTACACCGTCAAATGCTGTTGAAC
rJMSF051H22+ AATTATTGGGAATCACTAGTCATTTCCATTACACCGTCAAATGCTGTTGAACTGTATTAT
JMFS048A04- AATTATTGGGAATCACTAGTCATTTCCATTACACCGTCAAATGCTGTTGAACTGTATTAT
JMFS045C02- AATTATTGGGAATCACTAGTCATTTCCATTACACCGTCAAATGCTGTTGAACTGTATTAT
____________________________________________________________
consensus AATTATTGGGAATCACTAGTCATTTCCATTACACCGTCAAATGCTGTTGAACTGTATTAT
. : . : . : . : . : . :
rJMSF051H22+ GTTGTGAACTAAGAAATGTAACGAATTAAATCTCCAAACGAGCAAAAGTT
JMFS048A04- GTTGTGAACTAAGAAATGTAACGAATTAAATCTCCAAACGAGCAAAAGTTTGATTGAATT
JMFS045C02- GTTGTGAACTAAGAAATGTAACGAATTAAATCTCCAAACGAGCAAAAGTTTGATTGAATT
____________________________________________________________
consensus GTTGTGAACTAAGAAATGTAACGAATTAAATCTCCAAACGAGCAAAAGTTTGATTGAATT