Contig 004794:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS045C02Sequence453004794 (6)ref|XP_003597229.1|4e-464-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Medicago truncatula]
JMFS048A04Sequence437004794 (6)ref|XP_003597229.1|5e-434-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Medicago truncatula]
JMSF013J02Sequence486003606 (6)ref|XP_009592136.1|1e-09PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic 663004794 (6)gb|EPS62642.1|1e-101hypothetical protein M569_12144, partial [Genlisea aurea]
JMSF027L21Sequence655003606 (6)ref|XP_009592136.1|1e-79PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic 666004794 (6)gb|EPS62642.1|8e-102hypothetical protein M569_12144, partial [Genlisea aurea]
JMSF034B06Sequence689003606 (6)emb|CDP07116.1|5e-58unnamed protein product [Coffea canephora]708004794 (6)ref|XP_009797237.1|5e-122PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic-
JMSF051H22Sequence693003606 (6)ref|XP_009592136.1|8e-94PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic 710004794 (6)gb|EPS62642.1|9e-98hypothetical protein M569_12144, partial [Genlisea aurea]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF034B06+ TGAAGAGTTCTGATGCTACATTGGTTCTTCACAATCTCCCGTATTCTGAAG
                      ____________________________________________________________
consensus TGAAGAGTTCTGATGCTACATTGGTTCTTCACAATCTCCCGTATTCTGAAG
 
. : . : . : . : . : . :
rJMSF034B06+ AAAAAATTAGCCGAGTTCATGCTGCCAGGAGGCTTTTTGAATATCTCTCAGAAAATTCCT
rJMSF013J02+ CTCAGAAAATTCCT
rJMSF027L21+ CTCAGAAAATTCCT
                      ____________________________________________________________
consensus AAAAAATTAGCCGAGTTCATGCTGCCAGGAGGCTTTTTGAATATCTCTCAGAAAATTCCT
 
. : . : . : . : . : . :
rJMSF034B06+ TGGATTTTCCAGTAATTCATCATATAGAATTTCCCAAAGATATTCACAGGGATGATTTAG
rJMSF013J02+ NGGATTTTCCAGTAATTCATCATATAGAATTTCCCAAAGATATTCACAGGGATGATTTAG
rJMSF027L21+ TGGATTTTCCAGTAATTCATCATATAGAATTTCCCAAAGATATTCACAGGGATGATTTAG
rJMSF051H22+ GGATTTTCCAGTAATTCATCATATAGAATTTCCCAAAGATATTCACAGGGATGATTTAG
                      ____________________________________________________________
consensus TGGATTTTCCAGTAATTCATCATATAGAATTTCCCAAAGATATTCACAGGGATGATTTAG
 
. : . : . : . : . : . :
rJMSF034B06+ TAATTAGTGCCGGGAGCAATGCTGGAACCCTCTTGGTAGACGGTCTTGGAGATGGTGTCC
rJMSF013J02+ TAATTAGTGCCGGGAGCAATGCTGGAACCCTCTTGGTAGACGGTCTTGGAGATGGTGTCC
rJMSF027L21+ TAATTAGTGCCGGGAGCAATGCTGGAACCCTCTTGGTAGACGGTCTTGGAGATGGTGTCC
rJMSF051H22+ TAATTAGTGCCGGGAGCAATGCTGGAACCCTCTTGGTAGACGGTCTTGGAGATGGTGTCC
                      ____________________________________________________________
consensus TAATTAGTGCCGGGAGCAATGCTGGAACCCTCTTGGTAGACGGTCTTGGAGATGGTGTCC
 
. : . : . : . : . : . :
rJMSF034B06+ TGTTAGAAGCCCCAGACAGTGATTTTGATTTTATTAGGAATACATCTTTCAATCTTCTAC
rJMSF013J02+ TGTTAGAAGCCCCAGACAGTGATTTTGATTTTATTAGGAATACATCTTTCAATCTTCTAC
rJMSF027L21+ TGTTAGAAGCCCCAGACAGTGATTTTGATTTTATTAGGAATACATCTTTCAATCTTCTAC
rJMSF051H22+ TGTTAGAAGCCCCAGACAGTGATTTTGATTTTATTAGGAATACATCTTTCAATCTTCTAC
                      ____________________________________________________________
consensus TGTTAGAAGCCCCAGACAGTGATTTTGATTTTATTAGGAATACATCTTTCAATCTTCTAC
 
. : . : . : . : . : . :
rJMSF034B06+ AAGGATGCAGAATGAGGAATACTAAAACGGAGTATGTGTCATGCCCATCATGTGGCAGAA
rJMSF013J02+ AAGGATGCAGAATGAGGAATACTAAAACGGAGTATGTGTCATGCCCATCATGTGGCAGAA
rJMSF027L21+ AAGGATGCAGAATGAGGAATACTAAAACGGAGTATGTGTCATGCCCATCATGTGGCAGAA
rJMSF051H22+ AAGGATGCAGAATGAGGAATACTAAAACGGAGTATGTGTCATGCCCATCATGTGGCAGAA
                      ____________________________________________________________
consensus AAGGATGCAGAATGAGGAATACTAAAACGGAGTATGTGTCATGCCCATCATGTGGCAGAA
 
. : . : . : . : . : . :
rJMSF034B06+ CTCTTTTCGACCTTCAAGAGATAAGTGCAGAGATTAGGGAGAAGACGTCGCACTTGCCTG
rJMSF013J02+ CTCTTTTCGACCTTCAAGAGATAAGTGCAGAGATTAGGGAGAAGACGTCGCACTTGCCTG
rJMSF027L21+ CTCTTTTCGACCTTCAAGAGATAAGTGCAGAGATTAGGGAGAAGACGTCGCACTTGCCTG
rJMSF051H22+ CTCTTTTCGACCTTCAAGAGATAAGTGCAGAGATTAGGGAGAAGACGTCGCACTTGCCTG
JMFS048A04- GACGTCGCACTTGCCTG
JMFS045C02- CAGAGATTAGGGAGAAGACGTCGCACTTGCCTG
                      ____________________________________________________________
consensus CTCTTTTCGACCTTCAAGAGATAAGTGCAGAGATTAGGGAGAAGACGTCGCACTTGCCTG
 
. : . : . : . : . : . :
rJMSF034B06+ GTGTTTCGATTGCTATTATGGGCTGCATTGTCAATGGACCTGGGGAGATGGCTGATGCGG
rJMSF013J02+ GTGTTTCGATTGCTATTATGGGCTGCATTGTCAATGGACCTGGGGAGATGGCTGATGCGG
rJMSF027L21+ GTGTTTCGATTGCTATTATGGGCTGCATTGTCAATGGACCTGGGGAGATGGCTGATGCGG
rJMSF051H22+ GTGTTTCGATTGCTATTATGGGCTGCATTGTCAATGGACCTGGGGAGATGGCTGATGCGG
JMFS048A04- GTGTTTCGATTGCTATTATGGGCTGCATTGTCAATGGACCTGGGGAGATGGCTGATGCGG
JMFS045C02- GTGTTTCGATTGCTATTATGGGCTGCATTGTCAATGGACCTGGGGAGATGGCTGATGCGG
                      ____________________________________________________________
consensus GTGTTTCGATTGCTATTATGGGCTGCATTGTCAATGGACCTGGGGAGATGGCTGATGCGG
 
. : . : . : . : . : . :
rJMSF034B06+ ACTTTGGGTATGTTGGGGGTGCTCCTGGGAAGATTGATCTTTATGTCGGAAAGACTGTTG
rJMSF013J02+ ACTTTGGGTATGTTGGGGGTGCTCCTGGGAAGATTGATCTTTATGTCGGAAAGACTGTTG
rJMSF027L21+ ACTTTGGGTATGTTGGGGGTGCTCCTGGGAAGATTGATCTTTATGTCGGAAAGACTGTTG
rJMSF051H22+ ACTTTGGGTATGTTGGGGGTGCTCCTGGGAAGATTGATCTTTATGTCGGAAAGACTGTTG
JMFS048A04- ACTTTGGGTATGTTGGGGGTGCTCCTGGGAAGATTGATCTTTATGTCGGAAAGACTGTTG
JMFS045C02- ACTTTGGGTATGTTGGGGGTGCTCCTGGGAAGATTGATCTTTATGTCGGAAAGACTGTTG
                      ____________________________________________________________
consensus ACTTTGGGTATGTTGGGGGTGCTCCTGGGAAGATTGATCTTTATGTCGGAAAGACTGTTG
 
. : . : . : . : . : . :
rJMSF034B06+ TGAAGCGGGCCATTGCAATGGACCAAGCTACAGATGCCTTGATCGACCTAATTAAAGAAC
rJMSF013J02+ TGAAGCGGGCCATTGCAATGGACCAAGCTACAGATGCCTTGATCGACCTAATTAAAGAAC
rJMSF027L21+ TGAAGCGGGCCATTGCAATGGACCAAGCTACAGATGCCTTGATCGACCTAATTAAAGAAC
rJMSF051H22+ TGAAGCGGGCCATTGCAATGGACCAAGCTACAGATGCCTTGATCGACCTAATTAAAGAAC
JMFS048A04- TGAAGCGGGCCATTGCAATGGACCAAGCTACAGATGCCTTGATCGACCTAATTAAAGAAC
JMFS045C02- TGAAGCGGGCCATTGCAATGGACCAAGCTACAGATGCCTTGATCGACCTAATTAAAGAAC
                      ____________________________________________________________
consensus TGAAGCGGGCCATTGCAATGGACCAAGCTACAGATGCCTTGATCGACCTAATTAAAGAAC
 
. : . : . : . : . : . :
rJMSF034B06+ ATGGCCGCTGGGTGGATCCTCCAACAGAAGAGTAATATCACCATTTGATGTTTACCCTAT
rJMSF013J02+ ATGGCCGCTGGGTGGATCCTCCAACAGAAGAGTAATATCACCATTTGATGTTTACCCTAT
rJMSF027L21+ ATGGCCGCTGGGTGGATCCTCCAACAGAAGAGTAATATCACCATTTGATGTTTACCCTAT
rJMSF051H22+ ATGGCCGCTGGGTGGATCCTCCAACAGAAGAGTAATATCACCATTTGATGTTTACCCTAT
JMFS048A04- ATGGCCGCTGGGTGGATCCTCCAACAGAAGAGTAATATCACCATTTGATGTTTACCCTAT
JMFS045C02- ATGGCCGCTGGGTGGATCCTCCAACAGAAGAGTAATATCACCATTTGATGTTTACCCTAT
                      ____________________________________________________________
consensus ATGGCCGCTGGGTGGATCCTCCAACAGAAGAGTAATATCACCATTTGATGTTTACCCTAT
 
. : . : . : . : . : . :
rJMSF034B06+ CAAACTAATATTAGTCCCTATTATGCATATGTATCAGCAAGAATGTTTATGTATATC
rJMSF013J02+ CAAACTAATATTAGTCCCTATTATGCATATGTATCAGCAAGAATGTTTATGTATATCACG
rJMSF027L21+ CAAACTAATATTAGTCCCTATTATGCATATGTATCAGCAAGAATGTTTATGTATATCACG
rJMSF051H22+ CAAACTAATATTAGTCCCTATTATGCATATGTATCAGCAAGAATGTTTATGTATATCACG
JMFS048A04- CAAACTAATATTAGTCCCTATTATGCATATGTATCAGCAAGAATGTTTATGTATATCACG
JMFS045C02- CAAACTAATATTAGTCCCTATTATGCATATGTATCAGCAAGAATGTTTATGTATATCACG
                      ____________________________________________________________
consensus CAAACTAATATTAGTCCCTATTATGCATATGTATCAGCAAGAATGTTTATGTATATCACG
 
. : . : . : . : . : . :
rJMSF013J02+ AATTATTGGGAATCACTAGTCATTTCCATTA
rJMSF027L21+ AATTATTGGGAATCACTAGTCATTTCCATTACACCGTCAAATGCTGTTGAAC
rJMSF051H22+ AATTATTGGGAATCACTAGTCATTTCCATTACACCGTCAAATGCTGTTGAACTGTATTAT
JMFS048A04- AATTATTGGGAATCACTAGTCATTTCCATTACACCGTCAAATGCTGTTGAACTGTATTAT
JMFS045C02- AATTATTGGGAATCACTAGTCATTTCCATTACACCGTCAAATGCTGTTGAACTGTATTAT
                      ____________________________________________________________
consensus AATTATTGGGAATCACTAGTCATTTCCATTACACCGTCAAATGCTGTTGAACTGTATTAT
 
. : . : . : . : . : . :
rJMSF051H22+ GTTGTGAACTAAGAAATGTAACGAATTAAATCTCCAAACGAGCAAAAGTT
JMFS048A04- GTTGTGAACTAAGAAATGTAACGAATTAAATCTCCAAACGAGCAAAAGTTTGATTGAATT
JMFS045C02- GTTGTGAACTAAGAAATGTAACGAATTAAATCTCCAAACGAGCAAAAGTTTGATTGAATT
                      ____________________________________________________________
consensus GTTGTGAACTAAGAAATGTAACGAATTAAATCTCCAAACGAGCAAAAGTTTGATTGAATT