Contig 004790:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003A20Sequence479004790 (4)ref|XP_010926250.1|8e-14PREDICTED: formin-like protein 20 isoform X2 [Elaeis guineensis]
JMFS040A06Sequence633004790 (4)ref|XP_010652843.1|2e-12PREDICTED: apoptotic chromatin condensation inducer in the nucleus isoform X2 [
JMFS072G01Sequence627004790 (4)ref|XP_010652843.1|2e-12PREDICTED: apoptotic chromatin condensation inducer in the nucleus isoform X2 [
JMFS122E12Sequence574004790 (4)ref|XP_010652843.1|2e-12PREDICTED: apoptotic chromatin condensation inducer in the nucleus isoform X2 [

Alignment

This contig is upended


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JMFS072G01+                            CCTTCAACAACTTTACCATCATCAGATGGCGTTCTGTTGTCAC
JMFS040A06+                                      CTTTACCATCATCAGATGGCGTTCTGTTGTCAC
                      ____________________________________________________________
consensus                              CCTTCAACAACTTTACCATCATCAGATGGCGTTCTGTTGTCAC
 
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JMFS122E12+                   ACTTTATGCACTTCACTTTCCACTTTATCACCTATTGAATCACAAGCAGCAG
JMFS072G01+           CAAGATCAACTTTATGCACTTCACTTTCCACTTTATCACCTATTGAATCACAAGCAGCAG
JMFS040A06+           CAAGATCAACTTTATGCACTTCACTTTCCACTTTATCACCTATTGAATCACAAGCAGCAG
                      ____________________________________________________________
consensus             CAAGATCAACTTTATGCACTTCACTTTCCACTTTATCACCTATTGAATCACAAGCAGCAG
 
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JMFS122E12+           GAGCATCCTTCTCCTTGTTAGCATCAAATAACTCAGTCTTTTCTTTTTCAGATTCAACTT
JMFS072G01+           GAGCATCCTTCTCCTTGTTAGCATCAAATAACTCAGTCTTTTCTTTTTCAGATTCAACTT
JMFF003A20+                                                          TCAGATTCAACTT
JMFS040A06+           GAGCATCCTTCTCCTTGTTAGCATCAAATAACTCAGTCTTTTCTTTTTCAGATTCAACTT
                      ____________________________________________________________
consensus             GAGCATCCTTCTCCTTGTTAGCATCAAATAACTCAGTCTTTTCTTTTTCAGATTCAACTT
 
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JMFS122E12+           TAGACTCGGGGGCAGAGTCAAAACCATCGCCAGTGTTTCCCTGTTCACTTTCCTGCTCAC
JMFS072G01+           TAGACTCGGGGGCAGAGTCAAAACCATCGCCAGTGTTTCCCTGTTCACTTTCCTGCTCAC
JMFF003A20+           TAGACTCGGGGGCAGAGTCAAAACCATCGCCAGTGTTTCCCTGTTCACTTTCCTGCTCAC
JMFS040A06+           TAGACTCGGGGGCAGAGTCAAAACCATCGCCAGTGTTTCCCTGTTCACTTTCCTGCTCAC
                      ____________________________________________________________
consensus             TAGACTCGGGGGCAGAGTCAAAACCATCGCCAGTGTTTCCCTGTTCACTTTCCTGCTCAC
 
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JMFS122E12+           TGCGAAGTGCTTCATCCAACCGCTTCACCAAATCTTCCTTCAGCCCTTTTGTTGTTAACT
JMFS072G01+           TGCGAAGTGCTTCATCCAACCGCTTCACCAAATCTTCCTTCAGCCCTTTTGTTGTTAACT
JMFF003A20+           TGCGAAGTGCTTCATCCAACCGCTTCACCAAATCTTCCTTCAGCCCTTTTGTTGTTAACT
JMFS040A06+           TGCGAAGTGCTTCATCCAACCGCTTCACCAAATCTTCCTTCAGCCCTTTTGTTGTTAACT
                      ____________________________________________________________
consensus             TGCGAAGTGCTTCATCCAACCGCTTCACCAAATCTTCCTTCAGCCCTTTTGTTGTTAACT
 
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JMFS122E12+           TGCGTCTCTTAAGCTCTTCCTTTAGCTCTGTGACTTTCCACTGATCAATCGGTCGACTGT
JMFS072G01+           TGCGTCTCTTAAGCTCTTCCTTTAGCTCTGTGACTTTCCACTGATCAATCGGTCGACTGT
JMFF003A20+           TGCGTCTCTTAAGCTCTTCCTTTAGCTCTGTGACTTTCCACTGATCAATCGGTCGACTGT
JMFS040A06+           TGCGTCTCTTAAGCTCTTCCTTTAGCTCTGTGACTTTCCACTGATCAATCGGTCGACTGT
                      ____________________________________________________________
consensus             TGCGTCTCTTAAGCTCTTCCTTTAGCTCTGTGACTTTCCACTGATCAATCGGTCGACTGT
 
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JMFS122E12+           CCAGAATAGGATATGGGGATGACATTTGTTTGTCCAAAATCCACACTTAAAATTGACTGG
JMFS072G01+           CCAGAATAGGATATGGGGATGACATTTGTTTGTCCAAAATCCACACTTAAAATTGACTGG
JMFF003A20+           CCAGAATAGGATATGGGGATGACATTTGTTTGTCCAAAATCCACACTTAAAATTGACTGG
JMFS040A06+           CCAGAATAGGATATGGGGATGACATTTGTTTGTCCAAAATCCACACTTAAAATTGACTGG
                      ____________________________________________________________
consensus             CCAGAATAGGATATGGGGATGACATTTGTTTGTCCAAAATCCACACTTAAAATTGACTGG
 
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JMFS122E12+           TAAGGATTTGGTTCAATGCTGGAATAGCTGTGATCACAGATGTCAGTTTCCACAGTTACA
JMFS072G01+           TAAGGATTTGGTTCAATGCTGGAATAGCTGTGATCACAGATGTCAGTTTCCACAGTTACA
JMFF003A20+           TAAGGATTTGGTTCAATGCTGGAATAGCTGTGATCACAGATGTCAGTTTCCACAGTTACA
JMFS040A06+           TAAGGATTTGGTTCAATGCTGGAATAGCTGTGATCACAGATGTCAGTTTCCACAGTTACA
                      ____________________________________________________________
consensus             TAAGGATTTGGTTCAATGCTGGAATAGCTGTGATCACAGATGTCAGTTTCCACAGTTACA
 
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JMFS122E12+           AGAAACGTGTGGAGACAGCAAGCCCTAGCTTCACCATAACACAAACACAACTATCAGCAG
JMFS072G01+           AGAAACGTGTGGAGACAGCAAGCCCTAGCTTCACCATAACACAAACACAACTATCAGCAG
JMFF003A20+           AGAAACGTGTGGAGACAGCAAGCCCTAGCTTCACCATAACACAAACACAACTATCAGCAG
JMFS040A06+           AGAAACGTGTGGAGACAGCAAGCCCTAGCTTCACCATAACACAAACACAACTATCAGCAG
                      ____________________________________________________________
consensus             AGAAACGTGTGGAGACAGCAAGCCCTAGCTTCACCATAACACAAACACAACTATCAGCAG
 
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JMFS122E12+           AATTTAACAAAAATCAAACAAATGAAAACAAGATTCAAAAGAAAAATCTGGAAAATGTAA
JMFS072G01+           AATTTAACAAAAATCAAACAAATGAAAACAAGATTCAAAAGAAAAATCTGGAAAATGTAA
JMFF003A20+           AATTTAACAAAAATCAAACAAATGAAAACAAGATTCAAAAGAAAAATCTGGAAAATGTAA
JMFS040A06+           AATTTAACAAAAATCAAACAAATGAAAACAAGATTCAAAAGAAAAATCTGGAAAATGTAA
                      ____________________________________________________________
consensus             AATTTAACAAAAATCAAACAAATGAAAACAAGATTCAAAAGAAAAATCTGGAAAATGTAA
 
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JMFS122E12+           AGTGAGAGCAAAAAATAGCGGTCCGATTAGGGTTTTGGGTAG                  
JMFS072G01+           AGTGAGAGCAAAAAATAGCGGTCCGATTAGGGTTTTGGGTAG                  
JMFF003A20+           AGTGAGAGCAAAAAATAGCGGTCCGATTAGGGTTTTGGGTAG                  
JMFS040A06+           AGTGAGAGCAAAAAATAGCGGTCCGATTAGGGTTTTGGGTAGTGCTTCTGCCTGCAGCCC
                      ____________________________________________________________
consensus             AGTGAGAGCAAAAAATAGCGGTCCGATTAGGGTTTTGGGTAGTGCTTCTGCCTGCAGCCC