Contig 004789:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS040A02Sequence353004789 (3)ref|XP_009592651.1|5e-07PREDICTED: uncharacterized protein LOC104089453 isoform X1 [Nicotiana tomentosi
JMSF040D05Sequence689000938 (2)ref|XP_009592652.1|4e-17PREDICTED: phosphatidylcholine transfer protein-like isoform X2 [Nicotiana tome889004789 (3)ref|XP_009793255.1|6e-69PREDICTED: uncharacterized protein LOC104240177 isoform X1 [Nicotiana sylvestri
JMSF043M02Sequence743000938 (2)ref|XP_009592652.1|3e-22PREDICTED: phosphatidylcholine transfer protein-like isoform X2 [Nicotiana tome673004789 (3)ref|XP_009793255.1|6e-52PREDICTED: uncharacterized protein LOC104240177 isoform X1 [Nicotiana sylvestri

Alignment

This contig is upended


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rJMSF040D05+                                                            TTAGTTGCAT
                      ____________________________________________________________
consensus                                                               TTAGTTGCAT
 
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rJMSF040D05+          GATTCATTGACCATGTTGCCAAANCATTATCTGTAAATTATCATTACTTTTCTGCCCTTC
                      ____________________________________________________________
consensus             GATTCATTGACCATGTTGCCAAANCATTATCTGTAAATTATCATTACTTTTCTGCCCTTC
 
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rJMSF040D05+          TGCCAGTTTTTATTACTGTTTGGTGGCTATGTCTAATAAATTTTGCATATGGTGATGATT
                      ____________________________________________________________
consensus             TGCCAGTTTTTATTACTGTTTGGTGGCTATGTCTAATAAATTTTGCATATGGTGATGATT
 
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rJMSF040D05+          AGGAGTGTGAACATCCTTTAATCCCAAGACAGAAGAAGTATGTACGGGTTGCACTGTTCA
                      ____________________________________________________________
consensus             AGGAGTGTGAACATCCTTTAATCCCAAGACAGAAGAAGTATGTACGGGTTGCACTGTTCA
 
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rJMSF040D05+          GATCTGGTTGGAGAATCAAGAAAGTTTCTGGTAGGAATGCCTGTGAGATCAAAATGGTGT
rJMSF043M02+                                    TCTGGTAGGAATGCCTGTGAGATCAAAATGGTGT
                      ____________________________________________________________
consensus             GATCTGGTTGGAGAATCAAGAAAGTTTCTGGTAGGAATGCCTGTGAGATCAAAATGGTGT
 
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rJMSF040D05+          ACCAAGAAGATTCTGGTATGAATGTTGAAATGGCAAGGCTAGCATTTGCAAAGGGCATAT
rJMSF043M02+          ACCAAGAAGATTCTGGTATGAATGTTGAAATGGCAAGGCTAGCATTTGCAAAGGGCATAT
                      ____________________________________________________________
consensus             ACCAAGAAGATTCTGGTATGAATGTTGAAATGGCAAGGCTAGCATTTGCAAAGGGCATAT
 
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rJMSF040D05+          GGAGTTATATTTGCAAGATGCATACTGCACTTCGTAAATACTCAACTATTGGCCATTCTC
rJMSF043M02+          GGAGTTATATTTGCAAGATGCATACTGCACTTCGTAAATACTCAACTATTGGCCATTCTC
                      ____________________________________________________________
consensus             GGAGTTATATTTGCAAGATGCATACTGCACTTCGTAAATACTCAACTATTGGCCATTCTC
 
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rJMSF040D05+          AACTAAATTCTGGTGTGACAGCAATCACATTAATTCAGAAGGTCCCACCTGAATTGGAGG
rJMSF043M02+          AACTAAATTCTGGTGTGACAGCAATCACATTAATTCAGAAGGTCCCACCTGAATTGGAGG
                      ____________________________________________________________
consensus             AACTAAATTCTGGTGTGACAGCAATCACATTAATTCAGAAGGTCCCACCTGAATTGGAGG
 
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rJMSF040D05+          CTATTAGCAACACAACCGACGCAATACATCCCAGAACCTCCACAAGCAGTGCACACCTCC
rJMSF043M02+          CTATTAGCAACACAACCGACGCAATACATCCCAGAACCTCCACAAGCAGTGCACACCTCC
                      ____________________________________________________________
consensus             CTATTAGCAACACAACCGACGCAATACATCCCAGAACCTCCACAAGCAGTGCACACCTCC
 
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rJMSF040D05+          ATCATGAATTGCCACATGAAACGAGTGCAAGGAAATTATTGAGTAAGCCATCAATTAAAT
rJMSF043M02+          ATCATGAATTGCCACATGAAACGAGTGCAAGGAAATTATTGAGTAAGCCATCAATTAAAT
                      ____________________________________________________________
consensus             ATCATGAATTGCCACATGAAACGAGTGCAAGGAAATTATTGAGTAAGCCATCAATTAAAT
 
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rJMSF040D05+          TGATGAAAAGTGCATTTATTCTAATTGGAGGCGCAATCTGTTTGTCTCGCGGCCATTCCA
rJMSF043M02+          TGATGAAAAGTGCATTTATTCTAATTGGAGGCGCAATCTGTTTGTCTCGCGGCCATTCCA
JMFS040A02-                  AAGTGCATTTATTCTAATTGGAGGCGCAATCTGTTTGTCTCGCGGCCATTCCA
                      ____________________________________________________________
consensus             TGATGAAAAGTGCATTTATTCTAATTGGAGGCGCAATCTGTTTGTCTCGCGGCCATTCCA
 
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rJMSF040D05+          ACTTGGGCGTGAAGGTCGCCATGGCATGCATCTTGGGGAATCTCACCAAACAAAATGCTT
rJMSF043M02+          ACTTGGGCGTGAAGGTCGCCATGGCATGCATCTTGGGGAATCTCACCAAACAAAATGCTT
JMFS040A02-           ACTTGGGCGTGAAGGTCGCCATGGCATGCATCTTGGGGAATCTCACCAAACAAAATGCTT
                      ____________________________________________________________
consensus             ACTTGGGCGTGAAGGTCGCCATGGCATGCATCTTGGGGAATCTCACCAAACAAAATGCTT
 
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rJMSF040D05+          CAGCCTTCAAGAAGCAAAAGAGCAAGGAGAGAGTCGGCCTAGCAGGTCTTCCTAGTCATG
rJMSF043M02+          CAGCCTTCGAGAAGCAAAAGAGCAAGGAGAGAGTCGGCCTAGCAGGTCTTCCTAGTCATG
JMFS040A02-           CAGCCTTCAAGAAGCAAAAGAGCAAGGAGAGAGTCGGCCTAGCAGGTCTTCCTAGTCATG
                      ____________________________________________________________
consensus             CAGCCTTCAAGAAGCAAAAGAGCAAGGAGAGAGTCGGCCTAGCAGGTCTTCCTAGTCATG
 
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rJMSF040D05+          AAGATTGTGGGACAATCCAGTAACCTACCCATAGCTGATGGCATCGGCTTTGTATAATTT
rJMSF043M02+          AAGATTGTGGGACAATCCAGTAACCTACCCATAGCTGATGGCATCGGCTTTGTATAATTT
JMFS040A02-           AAGATTGTGGGACAATCCAGTAACCTACCCATAGCTGATGGCATCGGCTTTGTATAATTT
                      ____________________________________________________________
consensus             AAGATTGTGGGACAATCCAGTAACCTACCCATAGCTGATGGCATCGGCTTTGTATAATTT
 
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rJMSF040D05+          TGGGCTGCCTAATTGCTGGAAATTGCTAGTTTAACATTGTTTCTTTGTCTGCTACCTTGT
rJMSF043M02+          TGGGCTGCCTAATTGCTGGAAATTGCTAGTTTAACATTGTTTCTTTGTCTGCTACCTTGT
JMFS040A02-           TGGGCTGCCTAATTGCTGGAAATTGCTAGTTTAACATTGTTTCTTTGTCTGCTACCTTGT
                      ____________________________________________________________
consensus             TGGGCTGCCTAATTGCTGGAAATTGCTAGTTTAACATTGTTTCTTTGTCTGCTACCTTGT
 
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rJMSF040D05+          ATTTGTAATTATAATTTGATCTGTCCATTATGAGATCAT                     
rJMSF043M02+          ATTTGTAATTATAATTTGATCTGTCCATTATGAGATCAT                     
JMFS040A02-           ATTTGTAATTATAATTTGATCTGTCCATTATGAGATCATTTAAAATATAATGTATAGTTT
                      ____________________________________________________________
consensus             ATTTGTAATTATAATTTGATCTGTCCATTATGAGATCATTTAAAATATAATGTATAGTTT