Contig 004787:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS030E04Sequence532004787 (3)emb|CDP03119.1|7e-34unnamed protein product [Coffea canephora]
JMFS039E11Sequence618004787 (3)emb|CDP03119.1|1e-41unnamed protein product [Coffea canephora]
JMFS144A06Sequence616004787 (3)emb|CDP03119.1|1e-41unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFS144A06+                                             CTAGTAGACAGGTTTGAAGAACTCCA
JMFS039E11+                                                     CAGGTTTGAAGAACTCCA
                      ____________________________________________________________
consensus                                               CTAGTAGACAGGTTTGAAGAACTCCA
 
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JMFS030E04+                             AGTTTAGTCATATCATCCACACCACCAGGTGGAGCCTCATCA
JMFS144A06+           GGCTCATGAAGATAGGAGAGTTTAGTCATATCATCCACACCACCAGGTGGAGCCTCATCA
JMFS039E11+           GGCTCATGAAGATAGGAGAGTTTAGTCATATCATCCACACCACCAGGTGGAGCCTCATCA
                      ____________________________________________________________
consensus             GGCTCATGAAGATAGGAGAGTTTAGTCATATCATCCACACCACCAGGTGGAGCCTCATCA
 
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JMFS030E04+           TCCTTGGGGAACACCTTAGAGATATTTGCAACAACCTTTTTACCAGTTGTAGTATTAACG
JMFS144A06+           TCCTTGGGGAACACCTTAGAGATATTTGCAACAACCTTTTTACCAGTTGTAGTATTAACG
JMFS039E11+           TCCTTGGGGAACACCTTAGAGATATTTGCAACAACCTTTTTACCAGTTGTAGTATTAACG
                      ____________________________________________________________
consensus             TCCTTGGGGAACACCTTAGAGATATTTGCAACAACCTTTTTACCAGTTGTAGTATTAACG
 
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JMFS030E04+           TGTGCATCTTGACCATCAATTTTTATCACTTCCCCATCTATCCATGCCAACTTGGGATCC
JMFS144A06+           TGTGCATCTTGACCATCAATTTTTATCACTTCCCCATCTATCCATGCCAACTTGGGATCC
JMFS039E11+           TGTGCATCTTGACCATCAATTTTTATCACTTCCCCATCTATCCATGCCAACTTGGGATCC
                      ____________________________________________________________
consensus             TGTGCATCTTGACCATCAATTTTTATCACTTCCCCATCTATCCATGCCAACTTGGGATCC
 
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JMFS030E04+           TCCACCCATACATGAGAACCAACATTAATGTTGACAGGTGATGCCATTGGACGAGCTCCG
JMFS144A06+           TCCACCCATACATGAGAACCAACATTAATGTTGACAGGTGATGCCATTGGACGAGCTCCG
JMFS039E11+           TCCACCCATACATGAGAACCAACATTAATGTTGACAGGTGATGCCATTGGACGAGCTCCG
                      ____________________________________________________________
consensus             TCCACCCATACATGAGAACCAACATTAATGTTGACAGGTGATGCCATTGGACGAGCTCCG
 
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JMFS030E04+           AGTTTATCGATCTCCTCCCTTGCAACTCATCAAGAGGAAAAGCACCGTCCTCTGAGTCGC
JMFS144A06+           AGTTTATCGATCTCCTCCCTTGCAACTCATCAAGAGGAAAAGCACCGTCCTCTGAGTCGC
JMFS039E11+           AGTTTATCGATCTCCTCCCTTGCAACTCATCAAGAGGAAAAGCACCGTCCTCTGAGTCGC
                      ____________________________________________________________
consensus             AGTTTATCGATCTCCTCCCTTGCAACTCATCAAGAGGAAAAGCACCGTCCTCTGAGTCGC
 
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JMFS030E04+           TGAGCCAGATCGGAAGTCGCACCACCAACTTTGAGCTCCGGAAATTACCGCCGCCGATGA
JMFS144A06+           TGAGCCAGATCGGAAGTCGCACCACCAACTTTGAGCTCCGGAAATTACCGCCGCCGATGA
JMFS039E11+           TGAGCCAGATCGGAAGTCGCACCACCAACTTTGAGCTCCGGAAATTACCGCCGCCGATGA
                      ____________________________________________________________
consensus             TGAGCCAGATCGGAAGTCGCACCACCAACTTTGAGCTCCGGAAATTACCGCCGCCGATGA
 
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JMFS030E04+           TACGCCGACGACAATAACAAGAAACAGGAGAAGAAAACAACGCCTTTTTTCCCACCGATG
JMFS144A06+           TACGCCGACGACAATAACAAGAAACAGGAGAAGAAAACAACGCCTTTTTTCCCACCGATG
JMFS039E11+           TACGCCGACGACAATAACAAGAAACAGGAGAAGAAAACAACGCCTTTTTTCCCACCGATG
                      ____________________________________________________________
consensus             TACGCCGACGACAATAACAAGAAACAGGAGAAGAAAACAACGCCTTTTTTCCCACCGATG
 
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JMFS030E04+           ACTCGAGTTCCGGTAAAAAGCTAAAACGTTATTTTTTTTTATTGTTTTTGTTTCTTCTCA
JMFS144A06+           ACTCGAGTTCCGGTAAAAAGCTAAAACGTTATTTTTTTTTATTGTTTTTGTTTCTTCTCA
JMFS039E11+           ACTCGAGTTCCGGTAAAAAGCTAAAACGTTATTTTTTTTTATTGTTTTTGTTTCTTCTCA
                      ____________________________________________________________
consensus             ACTCGAGTTCCGGTAAAAAGCTAAAACGTTATTTTTTTTTATTGTTTTTGTTTCTTCTCA
 
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JMFS030E04+           GCAAATATGAATACTGTATGCTATGAAACGATCAACAGAAATGAAAAGGTAAAGTGAATC
JMFS144A06+           GCAAATATGAATACTGTATGCTATGAAACGATCAACAGAAATGAAAAGGTAAAGTGAATC
JMFS039E11+           GCAAATATGAATACTGTATGCTATGAAACGATCAACAGAAATGAAAAGGTAAAGTGAATC
                      ____________________________________________________________
consensus             GCAAATATGAATACTGTATGCTATGAAACGATCAACAGAAATGAAAAGGTAAAGTGAATC
 
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JMFS030E04+           AATTCTCTCT                                                  
JMFS144A06+           AATTCTCTCTCTATCTCTCTCTCTAAACTTTGCTTAGGTTGATGATGC            
JMFS039E11+           AATTCTCTCTCTATCTCTCTCTCTAAACTTTGCTTAGGTTGATGATGCGTTCTCTCTCTC
                      ____________________________________________________________
consensus             AATTCTCTCTCTATCTCTCTCTCTAAACTTTGCTTAGGTTGATGATGCGTTCTCTCTCTC