Contig 004776:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS025C01Sequence637004776 (4)emb|CDP08812.1|4e-96unnamed protein product [Coffea canephora]
JMFS044A03Sequence569004776 (4)emb|CDP08812.1|2e-75unnamed protein product [Coffea canephora]
JMFS062G08Sequence627004776 (4)ref|XP_004229878.1|5e-98PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Solanum lyco
JMFS146A04Sequence633004776 (4)ref|XP_009629491.1|5e-90PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Nicotiana to

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS062G08+ TTGGATATCATCACGAGCTCCAAGGCTGGAACTAAGAATGAACGGCCTCCAGA
                      ____________________________________________________________
consensus TTGGATATCATCACGAGCTCCAAGGCTGGAACTAAGAATGAACGGCCTCCAGA
 
. : . : . : . : . : . :
JMFS062G08+ GTACAAATGCAAACATCGAATAGGCAGGAGGAANAATTAAGTTCAAAGGCAATGTTCGTT
                      ____________________________________________________________
consensus GTACAAATGCAAACATCGAATAGGCAGGAGGAANAATTAAGTTCAAAGGCAATGTTCGTT
 
. : . : . : . : . : . :
JMFS062G08+ GCATTCTTGATAGAGCTATAATGGAAGCATCTCCCAGTAAATCACCGATAAATCCATCAG
JMFS146A04+ CTTGATAGAGCTATAATGGAAGCATCTCCCAGTAAATCACCGATAAATCCATCAG
                      ____________________________________________________________
consensus GCATTCTTGATAGAGCTATAATGGAAGCATCTCCCAGTAAATCACCGATAAATCCATCAG
 
. : . : . : . : . : . :
JMFS062G08+ AAACTGTCCGACAATTCCCAACAAGTACCCTAAACCAGTGGACGGAAACTTCAACTGAAC
JMFS146A04+ AAACTGTCCGACAATTCCCAACAAGTACCCTAAACCAGTGGACGGAAACTTCAACTGAAC
                      ____________________________________________________________
consensus AAACTGTCCGACAATTCCCAACAAGTACCCTAAACCAGTGGACGGAAACTTCAACTGAAC
 
. : . : . : . : . : . :
JMFS062G08+ TATCGCCCTTGAAAGCCCCAACTGAGCGTGCATTCCCATTTGAATTAGATCTCACACTCC
JMFS146A04+ TATCGCCCTTGAAAGCCCCAACTGAGCGTGCATTCCCATTTGAATTAGATCTCACACTCC
                      ____________________________________________________________
consensus TATCGCCCTTGAAAGCCCCAACTGAGCGTGCATTCCCATTTGAATTAGATCTCACACTCC
 
. : . : . : . : . : . :
JMFS062G08+ TTATAAAATGAATAACATCCAGACCTTCCTTTAATTTGAAGAGGGAAACCATCCTCTCGA
JMFS146A04+ TTATAAAATGAATAACATCCAGACCTTCCTTTAATTTGAAGAGGGAAACCATCCTCTCGA
                      ____________________________________________________________
consensus TTATAAAATGAATAACATCCAGACCTTCCTTTAATTTGAAGAGGGAAACCATCCTCTCGA
 
. : . : . : . : . : . :
JMFS062G08+ GGTTCACAATTCCCTGAAGTATTGCTCCAATAACAAGAGCAGAAACAGCAGCACCAAATT
JMFS146A04+ GGTTCACAATTCCCTGAAGTATTGCTCCAATAACAAGAGCAGAAACAGCAGCACCAAATT
                      ____________________________________________________________
consensus GGTTCACAATTCCCTGAAGTATTGCTCCAATAACAAGAGCAGAAACAGCAGCACCAAATT
 
. : . : . : . : . : . :
JMFS062G08+ TAACAGTGAGATCATGGGATTCAGGAGACATTTGAAACTGAGAACGAGGCGCCCTTCCAG
JMFS146A04+ TAACAGTGAGATCATGGGATTCAGGAGACATTTGAAACTGAGAACGAGGCGCCCTTCCAG
                      ____________________________________________________________
consensus TAACAGTGAGATCATGGGATTCAGGAGACATTTGAAACTGAGAACGAGGCGCCCTTCCAG
 
. : . : . : . : . : . :
JMFS062G08+ GGGTAAAATTTTGTGCCACAGCAGAAGAAGCTTCTATTGCAAGAGCAACTTCAAAGACAC
JMFS146A04+ GGGTAAAATTTTGTGCCACAGCAGAAGAAGCTTCTATTGCAAGAGCAACTTCAAAGACAC
                      ____________________________________________________________
consensus GGGTAAAATTTTGTGCCACAGCAGAAGAAGCTTCTATTGCAAGAGCAACTTCAAAGACAC
 
. : . : . : . : . : . :
JMFS062G08+ GACTTTGACGCTCTCCAAGTGCTTCCTTTAGTAGGCAAAGGCAGGTTAAATGTACTCGCA
JMFS146A04+ GACTTTGACGCTCTCCAAGTGCTTCCTTTAGTAGGCAAAGGCAGGTTAAATGTACTCGCA
JMFS044A03+ TAGTAGGCAAAGGCAGGTTAGAGGTACTCGCA
JMFS025C01+ TAGTAGGCAAAGGCAGGTTAAATGTACTCGCA
                      ____________________________________________________________
consensus GACTTTGACGCTCTCCAAGTGCTTCCTTTAGTAGGCAAAGGCAGGTTAAATGTACTCGCA
 
. : . : . : . : . : . :
JMFS062G08+ AGATACGCCGTGCGATTTGTAATGAATCGGAAGT
JMFS146A04+ AGATACGCCGTGCGATTTGTAATGAATCGGAAGTGACCGAGGAGTTTAGATGATTATTAC
JMFS044A03+ AGATACGCCGTGCGATTTGTAATGAATCGGAAGTGACCGAGGAGTTTAGATGATTATTAC
JMFS025C01+ AGATACGCCGTGCGATTTGTAATGAATCGGAAGTGACCGAGGAGTTTAGATGATTATTAC
                      ____________________________________________________________
consensus AGATACGCCGTGCGATTTGTAATGAATCGGAAGTGACCGAGGAGTTTAGATGATTATTAC
 
. : . : . : . : . : . :
JMFS146A04+ AAGAAGCTAGATCAGGAATTTTTGCAATTACCTGTCCAGCATTACAAATAATTGCAGATA
JMFS044A03+ AAGAAGCTAGATCAGGAATTTTTGCAATTAGCTGTCCAGCATTACAAATAATTGCAGATA
JMFS025C01+ AAGAAGCTAGATCAGGAATTTTTGCAATTACCTGTCCAGCATTACAAATAATTGCAGATA
                      ____________________________________________________________
consensus AAGAAGCTAGATCAGGAATTTTTGCAATTACCTGTCCAGCATTACAAATAATTGCAGATA
 
. : . : . : . : . : . :
JMFS146A04+ TAGCCGATGAGATCAAAGTAGGATCACCTTCCTGAGCT
JMFS044A03+ TAGCCGATGAGACCAAAGTAGGATCACCTTCCTGAGCTGCACCACCAGTGTGCGTCATGC
JMFS025C01+ TAGCCGATGAGACCAAAGTAGGATCACCTTCCTGAGCTGCACCACCAGTCTGCCTCATGC
                      ____________________________________________________________
consensus TAGCCGATGAGACCAAAGTAGGATCACCTTCCTGAGCTGCACCACCAGTGTGCGTCATGC
 
. : . : . : . : . : . :
JMFS044A03+ AATCTAATAATCCCATTACCACTTGTTGGCCTATCTGATACCCATCATCCCAGTTTTCAG
JMFS025C01+ AATCTAATAATCCCATTACCACTTGTTGGCCTATCTGATACCCATCATCCCAGTTTTCAG
                      ____________________________________________________________
consensus AATCTAATAATCCCATTACCACTTGTTGGCCTATCTGATACCCATCATCCCAGTTTTCAG
 
. : . : . : . : . : . :
JMFS044A03+ ATAAAGGGTTTCTAAGTATGCTCACACCACCCAAATGCTTTTTCTCTTTGCCATAAAAAA
JMFS025C01+ ATAAAGGGTTTCTAACTATGCTCACACCACCCAAATGCTTTTTCTCTTTGCCATAAAAAA
                      ____________________________________________________________
consensus ATAAAGGGTTTCTAAGTATGCTCACACCACCCAAATGCTTTTTCTCTTTGCCATAAAAAA
 
. : . : . : . : . : . :
JMFS044A03+ ATTGAAAAGCTTCATCTACTTTTCTTTGTACTATGTCTCTCATGGTTAAGGCTACCCTTG
JMFS025C01+ ATTGAAAAGCTTAATCTACTTTTCTTTGTACTATGTCTCTCATGGTTAAGGCTACCCTTG
                      ____________________________________________________________
consensus ATTGAAAAGCTTCATCTACTTTTCTTTGTACTATGTCTCTCATGGTTAAGGCTACCCTTG
 
. : . : . : . : . : . :
JMFS044A03+ ATACACGAACTCCACTGATCTTTTGGCGAAAGAAATCATCTAAATCCTCCACCCCTGCTG
JMFS025C01+ ATACACGAACTCCACTTATCTTTTGGCGAAAGAAATCATCTAAATCCTCCACCCCTGCTG
                      ____________________________________________________________
consensus ATACACGAACTCCACTTATCTTTTGGCGAAAGAAATCATCTAAATCCTCCACCCCTGCTG
 
. : . : . : . : . : . :
JMFS044A03+ GTACCCCAAGAGGAAATCCAAACTCACCATCTAAAAGTCTTCCAGATTCAAGTTCAGAAG
JMFS025C01+ GTACCCCAAGAGGAAATCCAAACTCACCATCTAAAAGTCTTCCAGATTCAAGTTCAGAAG
                      ____________________________________________________________
consensus GTACCCCAAGAGGAAATCCAAACTCACCATCTAAAAGTCTTCCAGATTCAAGTTCAGAAG
 
. : . : . : . : . : . :
JMFS044A03+ TCAGTCTC
JMFS025C01+ TCAGTCTCTTATCATGTGTTGATTTGAAGTTCTTTTGCCATTCAACAACACTGGCCACAC
                      ____________________________________________________________
consensus TCAGTCTCTTATCATGTGTTGATTTGAAGTTCTTTTGCCATTCAACAACACTGGCCACAC
 
. : . : . : . : . : . :
JMFS025C01+ TGCCATATTTCTTCAAGAGGTACCTAGCATAACCCAAGGAAGGTGAGGTTGAAACTCTCC
                      ____________________________________________________________
consensus TGCCATATTTCTTCAAGAGGTACCTAGCATAACCCAAGGAAGGTGAGGTTGAAACTCTCC