Contig 004775:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017E13Sequence561004775 (4)334012279 (2)
JMFS024C11Sequence640004775 (4)
JMFS120H05Sequence626004775 (4)
JMSF039O03Sequence700004775 (4)ref|XP_006344633.1|1e-05PREDICTED: sucrose nonfermenting 4-like protein-like [Solanum tuberosum]619012279 (2)ref|XP_009588179.1|86.3PREDICTED: sucrose nonfermenting 4-like protein [Nicotiana tomentosiformis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039O03+                GTAAACGAGCCANTCAGCAACACCCTTNGTCCTCCATTTGGCCACACGAACCGTG
                      ____________________________________________________________
consensus                  GTAAACGAGCCANTCAGCAACACCCTTNGTCCTCCATTTGGCCACACGAACCGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039O03+           TGGGTATCAAAACTGTGCCTGTAATCCCACTATTGTTGTTCTCCCCACTATCTCCAGTAC
                      ____________________________________________________________
consensus             TGGGTATCAAAACTGTGCCTGTAATCCCACTATTGTTGTTCTCCCCACTATCTCCAGTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039O03+           CCGCATACATCTCCACCGCTCAGGAAAAAAAAATGATCCGTTCCTTGAAACCTAATCTTC
JMFS120H05+                                 GGAAAAAAAAATGATCCGTTCCTTGAAACCTAATCTTC
JMFF017E13+                                                                    TTC
JMFS024C11+                                 GGAAAAAAAAATGATCCGTTCCTTGAAACCTAATCTTC
                      ____________________________________________________________
consensus             CCGCATACATCTCCACCGCTCAGGAAAAAAAAATGATCCGTTCCTTGAAACCTAATCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039O03+           TCAATTTGCTCTCCAGATATAACCAACGAGAAAATCAACGCTTATCGAAATGATGACTCC
JMFS120H05+           TCAATNTGCTCTCCAGATATAACCAACGAGAAAATCAACGCTTATCGAAATGATGACTCC
JMFF017E13+           TCAATTTGCTCTCCAGATATAACCAACGAGAAAATCAACGCTTATCGAAATGATGACTCC
JMFS024C11+           TCAATTTGCTCTCCAGATATAACCAACGAGAAAATCAACGCTTATCGAAATGATGACTCC
                      ____________________________________________________________
consensus             TCAATTTGCTCTCCAGATATAACCAACGAGAAAATCAACGCTTATCGAAATGATGACTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039O03+           GCAATCCACAGCGCAGCTTCGAATAAACCGCGATTTCGGGATCCTCCACGCAACAGTAGC
JMFS120H05+           GCAATCCACAGCGCAGCTTCGAATAAACCGCGATTTCGGGATCCTCCACGCAACAGTAGC
JMFF017E13+           GCAATCCACAGCGCAGCTTCGAATAAACCGCGATTTCGGGATCCTCCACGCAACAGTAGC
JMFS024C11+           GCAATCCACAGCGCAGCTTCGAATAAACCGCGATTTCGGGATCCTCCACGCAACAGTAGC
                      ____________________________________________________________
consensus             GCAATCCACAGCGCAGCTTCGAATAAACCGCGATTTCGGGATCCTCCACGCAACAGTAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039O03+           AGCAGAGGACCCCACTTATAATTTATACATGCAACCACAATTAACAAGAAGCATCAAAAA
JMFS120H05+           AGCAGAGGACCCCACTTATAATTTATACATGCAACCACAATTAACAAGAAGCATCAAAAA
JMFF017E13+           AGCAGAGGACCCCACTTATAATTTATACATGCAACCACAATTAACAAGAAGCATCAAAAA
JMFS024C11+           AGCAGAGGACCCCACTTATAATTTATACATGCAACCACAATTAACAAGAAGCATCAAAAA
                      ____________________________________________________________
consensus             AGCAGAGGACCCCACTTATAATTTATACATGCAACCACAATTAACAAGAAGCATCAAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039O03+           CCCTAATTACACAGCACTCAAATCTCAAGCAAAGACGTCCTACTAGCCACAATTCCGCGC
JMFS120H05+           CCCTAATTACACAGCACTCAAATCTCAAGCAAAGACGTCCTACTAGCCACAATTCCGCGC
JMFF017E13+           CCCTAATTACACAGCACTCAAATCTCAAGCAAAGACGTCCTACTAGCCACAATTCCGCGC
JMFS024C11+           CCCTAATTACACAGCACTCAAATCTCAAGCAAAGACGTCCTACTAGCCACAATTCCGCGC
                      ____________________________________________________________
consensus             CCCTAATTACACAGCACTCAAATCTCAAGCAAAGACGTCCTACTAGCCACAATTCCGCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039O03+           CTTGCATTCATTAAAATGCCTAATTTTCAGCTAATTTTAATTTCAAGAACGGAAATGTTC
JMFS120H05+           CTTGCATTCATTAAAATGCCTAATTTTCAGCTAATTTTAATTTCAAGAACGGAAATGTTC
JMFF017E13+           CTTGCATTCATTAAAATGCCTAATTTTCAGCTAATTTTAATTTCAAGAACGGAAATGTTC
JMFS024C11+           CTTGCATTCATTAAAATGCCTAATTTTCAGCTAATTTTAATTTCAAGAACGGAAATGTTC
                      ____________________________________________________________
consensus             CTTGCATTCATTAAAATGCCTAATTTTCAGCTAATTTTAATTTCAAGAACGGAAATGTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039O03+           CTAATTATTGAAGACAAGTAAATCGAAACTCTGATCCGCGATAGAATTGAGACTCCTTTG
JMFS120H05+           CTAATTATTGAAGACAAGTAAATCGAAACTCTGATCCGCGATAGAATTGAGACTCCTTTG
JMFF017E13+           CTAATTATTGAAGACAAGTAAATCGAAACTCTGATCCGCGATAGAATTGAGACTCCTTTG
JMFS024C11+           CTAATTATTGAAGACAAGTAAATCGAAACTCTGATCCGCGATAGAATTGAGACTCCTTTG
                      ____________________________________________________________
consensus             CTAATTATTGAAGACAAGTAAATCGAAACTCTGATCCGCGATAGAATTGAGACTCCTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039O03+           AGGATTTGGCAAGGCAAAACTATAAACTCCGAAGTTTTGATCGCCGAAAACTAAAAGCCC
JMFS120H05+           AGGATTTGGCAAGGCAAAACTATAAACTCCGAAGTTTTGATCGCCGAAAACTAAAAGCCC
JMFF017E13+           AGGATTTGGCAAGGCAAAACTATAAACTCCGAAGTTTTGATCGCCGAAAACTAAAAGCCC
JMFS024C11+           AGGATTTGGCAAGGCAAAACTATAAACTCCGAAGTTTTGATCGCCGAAAACTAAAAGCCC
                      ____________________________________________________________
consensus             AGGATTTGGCAAGGCAAAACTATAAACTCCGAAGTTTTGATCGCCGAAAACTAAAAGCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039O03+           TAATTTAGCATGCAAGGTCAGGGAGTGCCATCGACATTGGTGGATGGATCTTCGAAGCTT
JMFS120H05+           TAATTTAGCATGCAAGGTCAGGGAGTGCCATCGACATTGGTGGATGGATCTTCGAAGCTT
JMFF017E13+           TAATTTAGCATGCAAGGTCAGGGAGTGCCATCGACATTGGTGGATGGATCTTCGAAGCTT
JMFS024C11+           TAATTTAGCATGCAAGGTAAGGGAGTGCCATCGACATTGGTGGATGGATCTTCGAAGCTT
                      ____________________________________________________________
consensus             TAATTTAGCATGCAAGGTCAGGGAGTGCCATCGACATTGGTGGATGGATCTTCGAAGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039O03+           TCTGTTCTGCAATGTGGTGGAGGGTGGAAGGGAGGAGAGAGTAG                
JMFS120H05+           TCTGTTCTGCAATGTGGTGGAGGGTGGAAGGGAGGAGAGAGTAGAATCATCAATGAAAAA
JMFF017E13+           TCTGTTCTGCAATGTGGTGGAGGGTGGAAGGGAGGAGAGAGTAGAATCATCAATGAAAAA
JMFS024C11+           TCTGTTCTGCAATGTGGTGGAGGGTGGAAGGGAGGAGAGAGTAGAATCATCAATGAAAAA
                      ____________________________________________________________
consensus             TCTGTTCTGCAATGTGGTGGAGGGTGGAAGGGAGGAGAGAGTAGAATCATCAATGAAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS120H05+           GAAAGGGAATTAAAGAATAAAAAAAAAACA                              
JMFF017E13+           GAAAGGGAATTAAAGAAT                                          
JMFS024C11+           GAAAGGGAATTAAAGAATAAAAAAAAAACAAAAACAAACACAAAAATAGTAAATAAATGA
                      ____________________________________________________________
consensus             GAAAGGGAATTAAAGAATAAAAAAAAAACAAAAACAAACACAAAAATAGTAAATAAATGA