| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS010F06 | Sequence | 620 | 004759 (7) | ref|XP_006351506.1| | 1e-53 | PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Solanum tubero | |||||
| JMFS011C10 | Sequence | 612 | 004759 (7) | ref|XP_006351506.1| | 1e-50 | PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Solanum tubero | |||||
| JMFS025E07 | Sequence | 613 | 004759 (7) | ref|XP_009787512.1| | 4e-105 | PREDICTED: DNA-directed RNA polymerases IV and V subunit 2 isoform X2 [Nicotian | |||||
| JMFS043C11 | Sequence | 610 | 004759 (7) | ref|XP_009787512.1| | 5e-90 | PREDICTED: DNA-directed RNA polymerases IV and V subunit 2 isoform X2 [Nicotian | |||||
| JMFS117D04 | Sequence | 624 | 004759 (7) | ref|XP_009787512.1| | 7e-108 | PREDICTED: DNA-directed RNA polymerases IV and V subunit 2 isoform X2 [Nicotian | |||||
| JMFS124F05 | Sequence | 563 | 004759 (7) | ref|XP_006351506.1| | 8e-48 | PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Solanum tubero | |||||
| JMFS141B06 | Sequence | 625 | 004759 (7) | ref|XP_009787512.1| | 5e-97 | PREDICTED: DNA-directed RNA polymerases IV and V subunit 2 isoform X2 [Nicotian | |||||
This contig is upended
. : . : . : . : . : . :
JMFS141B06+ ACCAGATACCCTTTCCATCCTC
____________________________________________________________
consensus ACCAGATACCCTTTCCATCCTC
. : . : . : . : . : . :
JMFS141B06+ TTATATGGATGTGACCATGCCCCAGTAGAAAATGCCCTACAGAGACCATTAGTGACTATT
____________________________________________________________
consensus TTATATGGATGTGACCATGCCCCAGTAGAAAATGCCCTACAGAGACCATTAGTGACTATT
. : . : . : . : . : . :
JMFS141B06+ GATGCATCCACATAATGTTCAATTGACTGTAGCTGTCGATCTCCATAGAGATCTCTTTGC
____________________________________________________________
consensus GATGCATCCACATAATGTTCAATTGACTGTAGCTGTCGATCTCCATAGAGATCTCTTTGC
. : . : . : . : . : . :
JMFS141B06+ ATTGCCTTGGTCATAACCCTTTCAACATGTTTAAGATGCACTCTAAGCTCTCGTTCTAGC
____________________________________________________________
consensus ATTGCCTTGGTCATAACCCTTTCAACATGTTTAAGATGCACTCTAAGCTCTCGTTCTAGC
. : . : . : . : . : . :
JMFS141B06+ AGCTCACTAGCAAGCTCCAACCTCTTATTCCTAAAATCATCTCTATTATCCGCTTTCCGC
____________________________________________________________
consensus AGCTCACTAGCAAGCTCCAACCTCTTATTCCTAAAATCATCTCTATTATCCGCTTTCCGC
. : . : . : . : . : . :
JMFS141B06+ TTACCTGAATAAGCTTGCAAGAGACACTTTACCATATATCCAAGAAATCGAGCCTTCTGC
____________________________________________________________
consensus TTACCTGAATAAGCTTGCAAGAGACACTTTACCATATATCCAAGAAATCGAGCCTTCTGC
. : . : . : . : . : . :
JMFS141B06+ TTGAAGCTGTTAAGACTAGGAAACAGGAAGTTGTTGATGCAATCTTCAATAGATTCTTGA
____________________________________________________________
consensus TTGAAGCTGTTAAGACTAGGAAACAGGAAGTTGTTGATGCAATCTTCAATAGATTCTTGA
. : . : . : . : . : . :
JMFS141B06+ GGAGGAAATCTACAGTTCTGCATAAGTTGAGCAACAAAATTAAGTGCTACCGGCTGTTTC
JMFS043C11+ TGCATAAGTTGAGCAACANAATTAAGTGCTACCGGCTGTTTC
____________________________________________________________
consensus GGAGGAAATCTACAGTTCTGCATAAGTTGAGCAACAAAATTAAGTGCTACCGGCTGTTTC
. : . : . : . : . : . :
JMFS141B06+ CTAAATGACTCGCACTTGCTATCAGCATCATGGATGGAAGCAACAAGTATATTCACAATT
JMFS043C11+ CTAAATGACTCGCATTTGCTATCAGCATCATGGATGGAAGCAACAAGTATATTCTCAATT
JMFS117D04+ TGGATGGAAGCAACAAGTATATTCNCAATT
____________________________________________________________
consensus CTAAATGACTCGCATTTGCTATCAGCATCATGGATGGAAGCAACAAGTATATTCTCAATT
. : . : . : . : . : . :
JMFS141B06+ TCTGTGTCTTTCGTGTCCACATCAATCAAGTTCACTACCTCTCTATCAGAGGATACACCA
JMFS043C11+ TCTGTGTCTTTCGTGTCCACATCAATCAAGTTCACTACCTCTCTATCAGAGGATACACCA
JMFS117D04+ TCTGTGTCTTTCGTGTCCACATCAATCAAGTTCACTACCTCTCTATCAGAGGATACACCA
JMFS025E07+ GATACACCA
____________________________________________________________
consensus TCTGTGTCTTTCGTGTCCACATCAATCAAGTTCACTACCTCTCTATCAGAGGATACACCA
. : . : . : . : . : . :
JMFS141B06+ AGTGCAAAGAAGAATATCCAAATTGGCATTTCTGTCACAGAAAAATACACGGTCAGGACT
JMFS043C11+ AGTGCAAAGAAGAATATCCAAATTGGCATTTCTGTCACAGAATAATACTCGGTCAGGTCT
JMFS117D04+ AGTGCAAAGAAGAATATCCAAATTGGCATTTCTGTCACAGAAAAATACACGGTCAGGACT
JMFS025E07+ AGTGCAAAGAAGAATATCCAAATTGGCATTTCTGTCACAGAAAAATACACGGTCAGGACT
____________________________________________________________
consensus AGTGCAAAGAAGAATATCCAAATTGGCATTTCTGTCACAGAAAAATACACGGTCAGGACT
. : . : . : . : . : . :
JMFS141B06+ TTT
JMFS043C11+ TTTTCTCCTCCCCTCACCGCAGGCACAAAATTGGGGGTCACTGTCAACATTATATATACT
JMFS117D04+ TTTTCTCCTCCCCTCACCACAGGCTCTACTTTGGGGGTCTCTGTCAACTTTATATATACT
JMFS025E07+ TTTTCTCCTCCCCTCACCACAGGCTCTACTTTGGGGGTCTCTGTCAACTTTATATATACT
____________________________________________________________
consensus TTTTCTCCTCCCCTCACCACAGGCTCTACTTTGGGGGTCTCTGTCAACTTTATATATACT
. : . : . : . : . : . :
JMFS043C11+ CTCTTCCATTTGGAAACTGGGCGATATGAAACCATCCAACTTGGATTGCTAGCTACCCAG
JMFS117D04+ CTCTTCCTTTTGGAAACTGGGCGATATGAAACCATCCAACTTGGATTGCTAGCTACCCAG
JMFS025E07+ CTCTTCCTTTTGGAAACTGGGCGATATGAAACCATCCAACTTGGATTGCTAGCTACCCAG
____________________________________________________________
consensus CTCTTCCTTTTGGAAACTGGGCGATATGAAACCATCCAACTTGGATTGCTAGCTACCCAG
. : . : . : . : . : . :
JMFS043C11+ AGTCTTTTTAAGCATATTTGTTCCAGTGCAATAAAGGTAATTTCAGCCCCTTTTACAATG
JMFS117D04+ AGTCTTTTTAAGCATATTTGTTCCTGTGCAATAAAGGTCTTCTCAGCCCCTTTTACAATG
JMFS025E07+ AGTCTTTTTAAGCATATTTGTTCCTGTGCAATAAAGGTCTTCTCAGCCCCTTTTACAATG
____________________________________________________________
consensus AGTCTTTTTAAGCATATTTGTTCCTGTGCAATAAAGGTCTTCTCAGCCCCTTTTACAATG
. : . : . : . : . : . :
JMFS043C11+ TAATATCCTCCATGATCAAATTCACAATCAGGCTTCTTGTTGCCATCACTCATCCAGCAG
JMFS117D04+ AAATATCCTCCATGATCAAATTCACAATCAGGCTTCTTGTTGCCATCACTCATCCAGCAG
JMFS025E07+ AAATATCCTCCATGATCAAATTCACAATCAGGCTTCTTGTTGCCATCACTCATCCAGCAG
____________________________________________________________
consensus AAATATCCTCCATGATCAAATTCACAATCAGGCTTCTTGTTGCCATCACTCATCCAGCAG
. : . : . : . : . : . :
JMFS043C11+ AGGTCAGAGTTTACCATCACAGGCAGTCTCCCAATTAGAAGATCCCTGGTATCCTCCATC
JMFS117D04+ AGGTCAGAGTTTACCATCACAGGCAGTCTCCCAATTAGAAGATCCCTGGTATCCTCCATC
JMFS025E07+ AGGTCAGAGTTTACCATCACAGGCAGTCTCCCAATTAGAAGATCCCTGGTATCCTCCATC
____________________________________________________________
consensus AGGTCAGAGTTTACCATCACAGGCAGTCTCCCAATTAGAAGATCCCTGGTATCCTCCATC
. : . : . : . : . : . :
JMFS043C11+ TCACATTCCTTTGAGACAAACTGGTCTATTCCGGTTTTAAACTTGTCACTCCGGGTCCTC
JMFS117D04+ TCACATTCCTTTGAGACAAACTGGTCTATTCCGGTTTTAAACTTGTCACTCCGGGTCCTC
JMFS025E07+ TCACATTCCTTTGAGACAAACTGGTCTATTCCGGTTTTAAACTTGTCACTCCGGGTCCTC
____________________________________________________________
consensus TCACATTCCTTTGAGACAAACTGGTCTATTCCGGTTTTAAACTTGTCACTCCGGGTCCTC
. : . : . : . : . : . :
JMFS043C11+ TTTTTAGTATACACCTGAAGATGG
JMFS117D04+ TTTTTAGTATACACCTGAAGATGGGTCTGAACTGTTATCCTGGCAGAATATGTCATAAAC
JMFS025E07+ TTTTTAGTATACACCTGAAGATGGGTCTGAACTGTTATCCTGGCAGAATATGTCATAAAC
JMFS010F06+ TGGCAGAATATGTCATAAAC
JMFS011C10+ TATGTCATAAAC
____________________________________________________________
consensus TTTTTAGTATACACCTGAAGATGGGTCTGAACTGTTATCCTGGCAGAATATGTCATAAAC
. : . : . : . : . : . :
JMFS117D04+ TGAAGGCGGGCATGTCGGGGCCACAACTGTAAATATTCTTCACCACCATCTTGA
JMFS025E07+ TGAAGGCGGGCATGTCGGGGCCACAACTGTAAATATTCTTCACCACCATCTTGAGAAAAC
JMFS124F05+ CATGTCGGGGCCACAACTGTAAATATTCTTCACCACCATCTTGAGAAAAC
JMFS010F06+ TGAAGGCGGGCATGTCGGGGCCACAACTGTAAATATTCTTCACCACCATCTTGAGAAAAC
JMFS011C10+ TGAAGGCGGGCATGTCGGGGCCACAACTGTAAATATTCTTCACCACCATCTTGAGANAAC
____________________________________________________________
consensus TGAAGGCGGGCATGTCGGGGCCACAACTGTAAATATTCTTCACCACCATCTTGAGAAAAC
. : . : . : . : . : . :
JMFS025E07+ TTTTCTCCAGTCCAAAACATTGGTCGACTAACGGTCACCTTCCCAAATTTTATTGCGGCA
JMFS124F05+ TTTTCTCCAGTCCAAAACATTGGTCGACTAACGGTCACCTTCCCAAATTTTATTGCGGCA
JMFS010F06+ TTTTCTCCAGTCCAAAACATTGGTCGACTAACGGTCACCTTCCCAAATTTTATTGCGGCA
JMFS011C10+ TTTTCTCCAGTCCAAAACATTGGTCGACTAACGGTCACCTTCCCAAATTTTATTGCGGCA
____________________________________________________________
consensus TTTTCTCCAGTCCAAAACATTGGTCGACTAACGGTCACCTTCCCAAATTTTATTGCGGCA
. : . : . : . : . : . :
JMFS025E07+ TATC
JMFS124F05+ TATCTCCAATCGTTATCACCCTTCTTTGATGGATCATATCCAGGCTCGACTACAATTTCG
JMFS010F06+ TATCTCCAATCGTTATCACCCTTCTTTGATGGATCATATCCAGGCTCGACTACAATTTCG
JMFS011C10+ TATCTCCAATCGTTATCACCCTTCTTTGATGGATCATATCCAGGCTCGACTACAATTTCG
____________________________________________________________
consensus TATCTCCAATCGTTATCACCCTTCTTTGATGGATCATATCCAGGCTCGACTACAATTTCG
. : . : . : . : . : . :
JMFS124F05+ CCAATTGAATCAAAAACTCTCTGGATCCCATGTTTGATGAAGTCATTGTATGAATTGATC
JMFS010F06+ CCAATTGAATCAAAAACTCTCTGGATCCCATGTTTGATGAAGTCATTGTATGAATTGATC
JMFS011C10+ CCAATTGAATCAAAAACTCTCTGGATCCCATGTTTGATGAAGTCATTGTATGAATTGATC
____________________________________________________________
consensus CCAATTGAATCAAAAACTCTCTGGATCCCATGTTTGATGAAGTCATTGTATGAATTGATC
. : . : . : . : . : . :
JMFS124F05+ TGGTGACTAATCAGCCCATACTTGTCAAAAAATGTAGTGGATACTTTTTTGCAGAAATCA
JMFS010F06+ TGGTGACTAATCAGCCCATACTTGTCAAAAAATGTAGTGGATACTTTTTTGCAGAAATCA
JMFS011C10+ TGGTGACTAATCAGCCCATACTTGTCAAAAAATGTAGTGGATACTTTTTTGCAGAAATCA
____________________________________________________________
consensus TGGTGACTAATCAGCCCATACTTGTCAAAAAATGTAGTGGATACTTTTTTGCAGAAATCA
. : . : . : . : . : . :
JMFS124F05+ GCTAATTTCTTTTTGTTCAAATTCATTTCTTGTAAAGCAGCTGCGTCAAATGGCTCATCA
JMFS010F06+ GCTAATTTCTTTTTGTTCAAATTCATTTCTTGTAAAGCAGCTGCGTCAAATGGCTCATCA
JMFS011C10+ GCTAATTTCTTTTTGTTCAAATTCATTTCTTGTAAAGCAGCTGCGTCAAATGGCTCATCA
____________________________________________________________
consensus GCTAATTTCTTTTTGTTCAAATTCATTTCTTGTAAAGCAGCTGCGTCAAATGGCTCATCA
. : . : . : . : . : . :
JMFS124F05+ TCTTCTTCTTCATCAAATTCAAGATCTTCAAAATCTATATCCATCTTTTCAGATCCATTT
JMFS010F06+ TCTTCTTCTTCATCAAATTCAAGATCTTCAAAATCTATATCCATCTTTTCAGATCCATTT
JMFS011C10+ TCTTCTTCTTCATCAAATTCAAGATCTTCAAAATCTATATCCATCTTTTCAGATCCATTT
____________________________________________________________
consensus TCTTCTTCTTCATCAAATTCAAGATCTTCAAAATCTATATCCATCTTTTCAGATCCATTT
. : . : . : . : . : . :
JMFS124F05+ GATATCTTCTCTTTCCCAGCACTAGTCTCTGCTCCTTCTCTCATTTTAACTGAATTCTAG
JMFS010F06+ GATATCTTCTCTTTCCCAGCACTAGTCTCTGCTCCTTCTCTCATTTTAACTGAATTCTAG
JMFS011C10+ GATATCTTCTCTTTCCCAGCACTAGTCTCTGCTCCTTCTCTCATTTTAACTGAATTCTAG
____________________________________________________________
consensus GATATCTTCTCTTTCCCAGCACTAGTCTCTGCTCCTTCTCTCATTTTAACTGAATTCTAG
. : . : . : . : . : . :
JMFS124F05+ CTTTCTACAAACCCCTCCGATTGAAATTTTTAGGGTTTGAACTCTCGCTTATCCCTTCCG
JMFS010F06+ CTTTCTACAAACCCCTCCGATTGAAATTTTTAGGGTTTGAACTCTCGCTTATCCCTTCCG
JMFS011C10+ CTTTCTACAAACCCCTCCGATTGAAATTTTTAGGGTTTGAACTCTCGCTTATCCCTTCCG
____________________________________________________________
consensus CTTTCTACAAACCCCTCCGATTGAAATTTTTAGGGTTTGAACTCTCGCTTATCCCTTCCG
. : . : . : . : . : . :
JMFS124F05+ CGATCAGCAAATGTAGAGAGAGAGAGAGAGGGA
JMFS010F06+ CGATCAGCAAATGTAGAGAGAGAGAGAGAGGGACTGTGAGTAGAGTGAGAGAAACAGAGA
JMFS011C10+ CGATCAGCAAATGTAGAGAGAGAGAGAGAGGGACTGTGAGTAGAGTGAGAGAAACAGAGA
____________________________________________________________
consensus CGATCAGCAAATGTAGAGAGAGAGAGAGAGGGACTGTGAGTAGAGTGAGAGAAACAGAGA