| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN045F19 | Sequence | 496 | 004752 (4) | gb|KCW66120.1| | 7e-70 | hypothetical protein EUGRSUZ_G03390 [Eucalyptus grandis] | |||||
| JMSF027B04 | Sequence | 635 | 004752 (4) | ref|XP_009364993.1| | 5e-67 | PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic-like [Pyrus x bretsc | 733 | 004752 (4) | ref|XP_010279020.1| | 2e-91 | PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Nelumbo nucifera] |
| JMSF028B04 | Sequence | 731 | 004752 (4) | ref|XP_009612301.1| | 2e-91 | PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Nicotiana tomentosi | |||||
This contig is upended
. : . : . : . : . : . :
JMSF027B04- GACAGTACAGATCCCATGGCGACCATTTTCTCTC
____________________________________________________________
consensus GACAGTACAGATCCCATGGCGACCATTTTCTCTC
. : . : . : . : . : . :
JMSF027B04- CCTCCGCCGTGTTCTCCGGCGCCACCGCGAAACCGCCGCCGCAGCAGCAGCAGCAAGCCA
____________________________________________________________
consensus CCTCCGCCGTGTTCTCCGGCGCCACCGCGAAACCGCCGCCGCAGCAGCAGCAGCAAGCCA
. : . : . : . : . : . :
JMSF027B04- AGTCGCCTCAGGTGTCGATACCGCCGCCGTCCAAACCGCCACTAGCGAACATAACAACCG
rJMSF027B04+ GATACCGCCGCCGTCCAAACCGCCACTAGCGAACATAACAACCG
rJMSF028B04+ GATACCGCCGCCGTCCAAACCGCCACTAGCGAACATAACAACCG
____________________________________________________________
consensus AGTCGCCTCAGGTGTCGATACCGCCGCCGTCCAAACCGCCACTAGCGAACATAACAACCG
. : . : . : . : . : . :
JMSF027B04- CGATAACCGCGACGGCGTTAGCCACGGCGATACTGACCGCCGCGCCGCCTTCCCTAGCGG
rJMSF027B04+ CGATAACCGCGACGGCGTTAGCCACGGCGATACTGACCGCCGCGCCGCCTTCCCTAGCGG
rJMSF028B04+ CGATAACCGCGACGGCGTTAGCCACGGCGATACTGACCGCCGCGCCGCCTTCCCTAGCGG
____________________________________________________________
consensus CGATAACCGCGACGGCGTTAGCCACGGCGATACTGACCGCCGCGCCGCCTTCCCTAGCGG
. : . : . : . : . : . :
JMSF027B04- AATCCCCGGCCTTCTCCGTGTACTACGGAACCGCCGCCAGCGCCGCCAATTACGGCGGAT
rJMSF027B04+ AATCCCCGGCCTTCTCCGTGTACTACGGAACCGCCGCCAGCGCCGCCAATTACGGCGGAT
rJMSF028B04+ AATCCCCGGCCTTCTCCGTGTACTACGGAACCGCCGCCAGCGCCGCCAATTACGGCGGAT
____________________________________________________________
consensus AATCCCCGGCCTTCTCCGTGTACTACGGAACCGCCGCCAGCGCCGCCAATTACGGCGGAT
. : . : . : . : . : . :
JMSF027B04- ACGGAGGGAATTCCGACAAGAAAGCCACGGCGGAGTACATCTACGACGTGCCGGACGGGT
rJMSF027B04+ ACGGAGGGAATTCCGACAAGAAAGCCACGGCGGAGTACATCTACGACGTGCCGGACGGGT
rJMSF028B04+ ACGGAGGGAATTCCGACAAGAAAGCCACGGCGGAGTACATCTACGACGTGCCGGACGGGT
____________________________________________________________
consensus ACGGAGGGAATTCCGACAAGAAAGCCACGGCGGAGTACATCTACGACGTGCCGGACGGGT
. : . : . : . : . : . :
JMSF027B04- GGAAGGAGCGGCTGGTGTCCAAAGTGGAGAAAGGGACCAACGGCACCGACTCCGAGTTCT
rJMSF027B04+ GGAAGGAGCGGCTGGTGTCCAAAGTGGAGAAAGGGACCAACGGCACCGACTCCGAGTTCT
rJMSF028B04+ GGAAGGAGCGGCTGGTGTCCAAAGTGGAGAAAGGGACCAACGGCACCGACTCCGAGTTCT
JMFN045F19- ACCGACTCCGAGTTCT
____________________________________________________________
consensus GGAAGGAGCGGCTGGTGTCCAAAGTGGAGAAAGGGACCAACGGCACCGACTCCGAGTTCT
. : . : . : . : . : . :
JMSF027B04- ACAACCCGAAGAAGAAGAAGGAGAAAGAGTACCTGACCTTCCTCGCCGGGTTCCGGCAGC
rJMSF027B04+ ACAACCCGAAGAAGAAGAAGGAGAAAGAGTACCTGACCTTCCTCGCCGGGTTCCGGCAGC
rJMSF028B04+ ACAACCCGAAGAAGAAGAAGGAGAAAGAGTACCTGACCTTCCTCGCCGGGTTCCGGCAGC
JMFN045F19- ACAACCCGAAGAAGAAGAAGGAGAAAGAGTACCTGACCTTCCTCGCCGGGTTCCGGCAGC
____________________________________________________________
consensus ACAACCCGAAGAAGAAGAAGGAGAAAGAGTACCTGACCTTCCTCGCCGGGTTCCGGCAGC
. : . : . : . : . : . :
JMSF027B04- TGGCGCCGAAAGACGCCGTGCTGAACAACCTGGCGCTGTCAGACGTGGAGCTGCAGGACC
rJMSF027B04+ TGGCGCCGAAAGACGCCGTGCTGAACAACCTGGCGCTGTCAGACGTGGAGCTGCAGGACC
rJMSF028B04+ TGGCGCCGAAAGACGCCGTGCTGAACAACCTGGCGCTGTCAGACGTGGAGCTGCAGGACC
JMFN045F19- TGGCGCCGAAAGACGCCGTGCTGAACAACCTGGCGCTGTCAGACGTGGAGCTGCAGGACC
____________________________________________________________
consensus TGGCGCCGAAAGACGCCGTGCTGAACAACCTGGCGCTGTCAGACGTGGAGCTGCAGGACC
. : . : . : . : . : . :
JMSF027B04- TCATCGCTAGCGCCGACGGCGTGAAATCGGAGGAGAGGAAAGACGAGAAGGGGCAGGTGT
rJMSF027B04+ TCATCGCTAGCGCCGACGGCGTGAAATCGGAGGAGAGGAAAGACGAGAAGGGGCAGGTGT
rJMSF028B04+ TCATCGCTAGCGCCGACGGCGTGAAATCGGAGGAGAGGAAAGACGAGAAGGGGCAGGTGT
JMFN045F19- TCATCGCTAGCGCCGACGGCGTGAAATCGGAGGAGAGGAAAGACGAGAAGGGGCAGGTGT
____________________________________________________________
consensus TCATCGCTAGCGCCGACGGCGTGAAATCGGAGGAGAGGAAAGACGAGAAGGGGCAGGTGT
. : . : . : . : . : . :
JMSF027B04- ACTATGAGTACGAGATTGATGGGGCCGCCGCGCATAGCTTGATCTCCGTTACTTGTGCGA
rJMSF027B04+ ACTATGAGTACGAGATTGATGGGGCCGCCGCGCATAGCTTGATCTCCGTTACTTGTGCGA
rJMSF028B04+ ACTATGAGTACGAGATTGATGGGGCCGCCGCGCATAGCTTGATCTCCGTTACTTGTGCGA
JMFN045F19- ACTATGAGTACGAGATTGATGGGGCCGCCGCGCATAGCTTGATCTCCGTTACTTGTGCGA
____________________________________________________________
consensus ACTATGAGTACGAGATTGATGGGGCCGCCGCGCATAGCTTGATCTCCGTTACTTGTGCGA
. : . : . : . : . : . :
JMSF027B04- A
rJMSF027B04+ AGAACAAGTTGTATGCGCATTTCGTGAACGCTCCGTTGCCGGAATGGAACCGCGATCAAG
rJMSF028B04+ AGAACAAGTTGTATGCGCATTTCGTGAACGCTCCGTTGCCGGAATGGAACCGCGATCAAG
JMFN045F19- AGAACAAGTTGTATGCGCATTTCGTGAACGCTCCGTTGCCGGAATGGAACCGCGATCAAG
____________________________________________________________
consensus AGAACAAGTTGTATGCGCATTTCGTGAACGCTCCGTTGCCGGAATGGAACCGCGATCAAG
. : . : . : . : . : . :
rJMSF027B04+ ACACGTTGAGGCACATTCACCAGTCTTTCAAAACAGTTGGGTGAGAATTTTTTTGCTTGT
rJMSF028B04+ ACACGTTGAGGCACATTCACCAGTCTTTCAAAACAGTTGGGTGAGAATTTTTTTGCTTGT
JMFN045F19- ACACGTTGAGGCACATTCACCAGTCTTTCAAAACAGTTGGGTGAGAATTTTTTTGCTTGT
____________________________________________________________
consensus ACACGTTGAGGCACATTCACCAGTCTTTCAAAACAGTTGGGTGAGAATTTTTTTGCTTGT
. : . : . : . : . : . :
rJMSF027B04+ ACAGAGGTCAATTAGCAGAGATTAATGAATGTATGACGATGATGATGATGATCCTTAAGG
rJMSF028B04+ ACAGAGGTCAATTAGCAGAGATTAATGAATGTATGACGATGATGATGATGATCCTTAAGG
JMFN045F19- ACAGAGGTCAATTAGCAGAGATTAATGAATGTATGACGATGATGATGATGATCCTTAAGG
____________________________________________________________
consensus ACAGAGGTCAATTAGCAGAGATTAATGAATGTATGACGATGATGATGATGATCCTTAAGG
. : . : . : . : . : . :
rJMSF027B04+ ATTATTGT
rJMSF028B04+ ATTATTGT
JMFN045F19- ATTATTGTTGAAGGTGTTTGATAAATTTGTGTAATTTTGGCTAATAAAGTCTCTGTGATC
____________________________________________________________
consensus ATTATTGTTGAAGGTGTTTGATAAATTTGTGTAATTTTGGCTAATAAAGTCTCTGTGATC