| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF016G18 | Sequence | 621 | 011125 (22) | gb|ABK94904.1| | 3e-135 | unknown [Populus trichocarpa] | 726 | 004749 (5) | gb|ABK94904.1| | 2e-83 | unknown [Populus trichocarpa] |
| JMFF026P22 | Sequence | 576 | 009005 (7) | gb|AFQ00710.1| | 7e-85 | pyrophosphate-energized vacuolar membrane proteon pump 1 [Ipomoea batatas] | 733 | 004749 (5) | gb|ABK94904.1| | 7e-76 | unknown [Populus trichocarpa] |
| JMFF039I07 | Sequence | 678 | 004749 (5) | gb|ABK94904.1| | 5e-73 | unknown [Populus trichocarpa] | |||||
| JMFN043I20 | Sequence | 575 | 004749 (5) | ref|XP_010654944.1| | 6e-41 | PREDICTED: pyrophosphate-energized vacuolar membrane proton pump-like [Vitis vi | |||||
| JMSF031H02 | Sequence | 650 | 009005 (7) | gb|AFQ00710.1| | 8e-104 | pyrophosphate-energized vacuolar membrane proteon pump 1 [Ipomoea batatas] | 732 | 004749 (5) | gb|ABK94904.1| | 6e-114 | unknown [Populus trichocarpa] |
This contig is upended
. : . : . : . : . : . :
rJMSF031H02+ TCTGCTATGACAATGAAGAGTGTCGGTAAGGCTG
____________________________________________________________
consensus TCTGCTATGACAATGAAGAGTGTCGGTAAGGCTG
. : . : . : . : . : . :
rJMSF031H02+ CTCTTAAGATGGTTGAGGAAGTGCGCAGGCAATTCAATACCATCCCCGGCCTCATGGAAG
____________________________________________________________
consensus CTCTTAAGATGGTTGAGGAAGTGCGCAGGCAATTCAATACCATCCCCGGCCTCATGGAAG
. : . : . : . : . : . :
rJMSF031H02+ GCACAGCCAAGCCCGACTATGCCACCTGCGTTAAGATCTCCACTGATGCC-TCTATCAAG
rJMFF016G18+ CTGCGTTAAGATCTCCACTGATGCC-TCTATCAAG
rJMFF026P22+ GCGTTAAGATCTCCACTGATGCCTTCTATCAAG
____________________________________________________________
consensus GCACAGCCAAGCCCGACTATGCCACCTGCGTTAAGATCTCCACTGATGCC-TCTATCAAG
. : . : . : . : . : . :
rJMSF031H02+ GAGATGATCCCACCCGGTGCTCTTGTCATGCTCACTCCCCTCATTGTCGGGATCTTCTTT
rJMFF016G18+ GAGATGATCCCACCCGGTGCTCTTGTCATGCTCACTCCCCTCATTGTCGGGATCTTCTTT
rJMFF039I07+ AGATGATCCCACCCGGTGCTCTTGTCATGCTCACTCCCCTCATTGTCGGGATCTTCTTT
rJMFF026P22+ GAGATGATCCCACCCGGTGCTCTTGTCATGCTCACTCCCCTCATTGTCGGGATCTTCTTT
____________________________________________________________
consensus GAGATGATCCCACCCGGTGCTCTTGTCATGCTCACTCCCCTCATTGTCGGGATCTTCTTT
. : . : . : . : . : . :
rJMSF031H02+ GGCGTGGAAACCTTGTCTGGTGTCCTTGCTGGATCCCTCGTCTCTGGTGTACAGATTGCT
rJMFF016G18+ GGCGTGGAAACCTTGTCTGGTGTCCTTGCTGGATCCCTCGTCTCTGGTGTACAGATTGCT
rJMFF039I07+ GGCGTGGAAACCTTGTCTGGTGTCCTTGCTGGATCCCTCGTCTCTGGTGTACAGATTGCT
rJMFF026P22+ GGCGTGGAAACCTTGTCTGGTGTCCTTGCTGGATCCCTCGTCTCTGGTGTACAGATTGCT
____________________________________________________________
consensus GGCGTGGAAACCTTGTCTGGTGTCCTTGCTGGATCCCTCGTCTCTGGTGTACAGATTGCT
. : . : . : . : . : . :
rJMSF031H02+ ATATCTGCATCCAACACTGGTGGTGCCTGGGATAACGCCAAGAAGTATATCGAGGCTGGG
rJMFF016G18+ ATATCTGCATCCAACACTGGTGGTGCCTGGGATAACGCCAAGAAGTATATCGAGGCTGGG
rJMFF039I07+ ATATCTGCATCCAACACTGGTGGTGCCTGGGATAACGCCAAGAAGTATATCGAGGCTGGG
rJMFF026P22+ ATATCTGCATCCAACACTGGTGGTGCCTGGGATAACGCCAAGAAGTATATCGAGGCTGGG
JMFN043I20- CCTGGGATAACGCCAAGAAGTATATCGAGGCTGGG
____________________________________________________________
consensus ATATCTGCATCCAACACTGGTGGTGCCTGGGATAACGCCAAGAAGTATATCGAGGCTGGG
. : . : . : . : . : . :
rJMSF031H02+ GCTTCCGAGCACGCAAGAACTCTTGGTCCAAAAGGATCTGACCCGCACAAGGCTGCTGTG
rJMFF016G18+ GCTTCCGAGCACGCAAGAACTCTTGGTCCAAAAGGATCTGACCCGCACAAGGCTGCTGTG
rJMFF039I07+ GCTTCCGAGCACGCAAGAACTCTTGGTCCAAAAGGATCTGACCCGCACAAGGCTGCTGTG
rJMFF026P22+ GCTTCCGAGCACGCAAGAACTCTTGGTCCAAAAGGATCTGACCCGCACAAGGCTGCTGTG
JMFN043I20- GCTTCCGAGCACGCAAGAACTCTTGGTCCAAAAGGATCTGACCCGCACAAGGCTGCTGTG
____________________________________________________________
consensus GCTTCCGAGCACGCAAGAACTCTTGGTCCAAAAGGATCTGACCCGCACAAGGCTGCTGTG
. : . : . : . : . : . :
rJMSF031H02+ ATAGGCGACACTGTGGGTGACCCTCTCAAGGACACATCTGGGCCGTCGTTGAACATTCTT
rJMFF016G18+ ATAGGCGACACTGTGGGTGACCCTCTCAAGGACACATCTGGGCCGTCGTTGAACATTCTT
rJMFF039I07+ ATAGGCGACACTGTGGGTGACCCTCTCAAGGACACATCTGGGCCGTCGTTGAACATTCTT
rJMFF026P22+ ATAGGCGACACTGTGGGTGACCCTCTCAAGGACACATCTGGGCCGTCGTTGAACATTCTT
JMFN043I20- ATAGGCGACACTGTGGGTGACCCTCTCAAGGACACATCTGGGCCGTCGTTGAACATTCTT
____________________________________________________________
consensus ATAGGCGACACTGTGGGTGACCCTCTCAAGGACACATCTGGGCCGTCGTTGAACATTCTT
. : . : . : . : . : . :
rJMSF031H02+ ATCAAGCTCATGGCTGTCGAGTCGCTTGTTTTTGCTCCTTTCTTTGCTGCCCATGGCGGT
rJMFF016G18+ ATCAAGCTCATGGCTGTCGAGTCGCTTGTTTTTGCTCCTTTCTTTGCTGCCCATGGCGGT
rJMFF039I07+ ATCAAGCTCATGGCTGTCGAGTCGCTTGTTTTTGCTCCTTTCTTTGCTGCCCATGGCGGT
rJMFF026P22+ ATCAAGCTCATGGCTGTCGAGTCGCTTGTTTTTGCTCCTTTCTTTGCTGCCCATGGCGGT
JMFN043I20- ATCAAGCTCATGGCTGTCGAGTCGCTTGTTTTTGCTCCTTTCTTTGCTGCCCATGGCGGT
____________________________________________________________
consensus ATCAAGCTCATGGCTGTCGAGTCGCTTGTTTTTGCTCCTTTCTTTGCTGCCCATGGCGGT
. : . : . : . : . : . :
rJMSF031H02+ CTGCTCTTCAAGATCTTTTAGAAAACATTCTAACTTGTCATCAAAAGTTGCTGAAATTAG
rJMFF016G18+ CTGCTCTTCAAGATCTTTTAGAAAACATTCTAACTTGTCATCAAAAGTTGCTGAAATTAG
rJMFF039I07+ CTGCTCTTCAAGATCTTTTAGAAAACATTCTAACTTGTCATCAAAAGTTGCTGAAATTAG
rJMFF026P22+ CTGCTCTTCAAGATCTTTTAGAAAACATTCTAACTTGTCATCAAAAGTTGCTGAAATTAG
JMFN043I20- CTGCTCTTCAAGATCTTTTAGAAAACATTCTAACTTGTCATCAAAAGTTGCTGAAATTAG
____________________________________________________________
consensus CTGCTCTTCAAGATCTTTTAGAAAACATTCTAACTTGTCATCAAAAGTTGCTGAAATTAG
. : . : . : . : . : . :
rJMSF031H02+ TAAAAGTTGAGGTTTGCTCAGAAATTTTCACCTATTCTGGGAGGAGATGACTTTGCGGCG
rJMFF016G18+ TAAAAGTTGAGGTTTGCTCAGAAATTTTCACCTATTCTGGAAGGAGATGACTTTGCGGCG
rJMFF039I07+ TAAAAGTTGAGGTTTGCTCAGAAATTTTCACCTATTCTGGGAGGAGATGACTTTGCGGCG
rJMFF026P22+ TAAAAGTTGAGGTTTGCTCAGAAATTTTCACCTATTCTGGGAGGAGATGACTTTGCGGCG
JMFN043I20- TAAAAGTTGAGGTTTGCTCAGAAATTTTCACCTATTCTGGGAGGAGATGACTTTGCGGCG
____________________________________________________________
consensus TAAAAGTTGAGGTTTGCTCAGAAATTTTCACCTATTCTGGGAGGAGATGACTTTGCGGCG
. : . : . : . : . : . :
rJMSF031H02+ GCGCTGCTGATCGTGAAATATTTGGAATAGTTGGGAGATCCTTTTACATGTATCGTTTTC
rJMFF016G18+ GCGCTGCTGATCGTGAAATATTTGGAATAGTTGGGAGATCCTTTTACATGTATCGTTTTC
rJMFF039I07+ GCGCTGCTGATCGTGAAATATTTGGAATAGTTGGGAGATCCTTTTACATGTATCGTTTTC
rJMFF026P22+ GCGCTGCTGATCGTGAAATATTTGGAATAGTTGGGAGATCCTTTTACATGTATCGTTTTC
JMFN043I20- GCGCTGCTGATCGAAAAATATTTGGAATAGTTGGGAGATCCTTTTACATGTATCGTTTTC
____________________________________________________________
consensus GCGCTGCTGATCGTGAAATATTTGGAATAGTTGGGAGATCCTTTTACATGTATCGTTTTC
. : . : . : . : . : . :
rJMSF031H02+ CGGCCAACATTTTCTTTTTGGGACCATTATGT
rJMFF016G18+ CGGCCAACATTTTCTTTTTGGGACCATTATGTTAAGAAATTTTGTTGGAATCGGTAACTT
rJMFF039I07+ CGGCCAACATTTTCTTTTTGGGACCATTATGTTAAGAAATTTTGTTGGAATCGGTAACTT
rJMFF026P22+ CGGCCAACATTTTCTTTTTGGGACCATTATGTTAAGAAATTTTGTTGGAATCGGTAACTT
JMFN043I20- CGGCCAACATTTTCTTTTTGGGACCATTATGTTAAGAAATTTTGTTGGAATCGGTAACTT
____________________________________________________________
consensus CGGCCAACATTTTCTTTTTGGGACCATTATGTTAAGAAATTTTGTTGGAATCGGTAACTT
. : . : . : . : . : . :
rJMFF016G18+ TTATGGATCTGTGTTAAATTGACCGGTTGAACTGTTTACATTTCTTTTTGCACAATATGA
rJMFF039I07+ TTATGGATCTGTGTTAAATTGACCGGTTGAACTGTTTACATTTCTTTTTGCACAATATGA
rJMFF026P22+ TTATGGATCTGTGTTAAATTGACCGGTTGAACTGTTTACATTTCTTTTTGCACAATATGA
JMFN043I20- TTATGGATCTGTGTTAAATTGACCGGTTGAACTGTTTACATTTCTTTTTGCACAATATGA
____________________________________________________________
consensus TTATGGATCTGTGTTAAATTGACCGGTTGAACTGTTTACATTTCTTTTTGCACAATATGA
. : . : . : . : . : . :
rJMFF016G18+ TTGGGTTTAGTGCCAACGTGCCTAATAT
rJMFF039I07+ TTGGGTTTAGTGCCAACGT
rJMFF026P22+ TTGGGTTTAGTGCCAACGTGCCTAATATTGGTTTAATATA
JMFN043I20- TTGGGTTTAGTGCCAACGTGCCTAATATTGGTTTAATATATTCTAAATTCAGTATTTGCC
____________________________________________________________
consensus TTGGGTTTAGTGCCAACGTGCCTAATATTGGTTTAATATATTCTAAATTCAGTATTTGCC