Contig 004746:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS117F02+                                    AAAGGTGACAGGCCCTCTCAGAGGAATTCATAATT
JMFN041D07+                                                      CAGAGGAATTCATAATN
                      ____________________________________________________________
consensus                                      AAAGGTGACAGGCCCTCTCAGAGGAATTCATAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS117F02+           TCATAGTAGAAGACTGAAAAGTTCAACGCCAAGCCTAATCGTATTGNATGTGTAGGAGGC
JMFN041D07+           TCATAGTAGAAGACTGAAAAGTTCAACGCCAAGCCTAATCGTATTGGATGTGTAGGAGGC
                      ____________________________________________________________
consensus             TCATAGTAGAAGACTGAAAAGTTCAACGCCAAGCCTAATCGTATTGGATGTGTAGGAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS117F02+           AGTTCAGACTCTGCTTTAGTAGCAGCTGCCTGATATGCTTTGAGTGATTGATCAGCAGCC
JMFN041D07+           AGTTCAGACTCTGCTTTAGTAGCAGCTGCCTGATATGCTTTGAGTGATTGATCAGCAGCC
                      ____________________________________________________________
consensus             AGTTCAGACTCTGCTTTAGTAGCAGCTGCCTGATATGCTTTGAGTGATTGATCAGCAGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS117F02+           TCTTTTCTTTCATCTGCCGCCTTAAACTCGGCCAAGTACCTGTAGTAATCCCCTTTCATT
JMFN041D07+           TCTTTTCTTTCATCTGCCGCCTTAAACTCGGCCAAGTACCTGTAGTAATCCCCTTTCATT
                      ____________________________________________________________
consensus             TCTTTTCTTTCATCTGCCGCCTTAAACTCGGCCAAGTACCTGTAGTAATCCCCTTTCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS117F02+           TTGTAGAAAAACACTGTGGATTCACCAGTTGTACAAGAAGGAATCAAATTTCCATCTAGC
JMFN041D07+           TTGTAGAAAAACACTGTGGATTCACCAGTTGTACAAGAAGGAATCAAATTTCCATCTAGC
                      ____________________________________________________________
consensus             TTGTAGAAAAACACTGTGGATTCACCAGTTGTACAAGAAGGAATCAAATTTCCATCTAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS117F02+           ACAGACATAATGTCAATACAAATGTTTGACAACTCGGTCTCAACCTTCTGTCTATAATCT
JMFN041D07+           ACAGACATAATGTCAATACAAATGTTTGACAACTCGGTCTCAAACTTCTGTCTATAATCT
                      ____________________________________________________________
consensus             ACAGACATAATGTCAATACAAATGTTTGACAACTCGGTCTCAACCTTCTGTCTATAATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS117F02+           TTGATCCGCTTCACATTTTGCTCATTTCCTCTGGCTTCTTCCTTCTGTTCAATGGAAGAA
JMFN041D07+           TTGATCCGCTTCACATTTTGCTCATTTCCTCTGGCTTCTTCCTTCTGTTCAATGGAAGAA
                      ____________________________________________________________
consensus             TTGATCCGCTTCACATTTTGCTCATTTCCTCTGGCTTCTTCCTTCTGTTCAATGGAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS117F02+           AGAATCCTCCAGGAAGCCCTTCGAGCCCCAATCACATTCTTGTACCCAACAGAGAGCAGA
JMFN041D07+           AGAATCCTCCAGGAAGCCCTTCGAGCCCCAATCACATTCTTGTACCCAACAGAGAGCAGA
                      ____________________________________________________________
consensus             AGAATCCTCCAGGAAGCCCTTCGAGCCCCAATCACATTCTTGTACCCAACAGAGAGCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS117F02+           TTCCGCTCCTCGACACTCAGCTCCACATCTAGCTTAGCTACTTTCTTCATGGAATCCACC
JMFN041D07+           TTCCGCTCCTCGACACTCAGCTCCACATCTAGCTTAGCTACTTTCTTCATGGAATCCACC
                      ____________________________________________________________
consensus             TTCCGCTCCTCGACACTCAGCTCCACATCTAGCTTAGCTACTTTCTTCATGGAATCCACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS117F02+           ATTTCTTCATATCGTTCGGCTTGCTCAGCGAGCTTGGCGACGTAGACGAAGGTTTCACGG
JMFN041D07+           ATTTCTTCATATCGTTCGGCTTGCTCAGCGAGCTTGGCGACGTAGACGAAGGTTTCACGG
                      ____________________________________________________________
consensus             ATTTCTTCATATCGTTCGGCTTGCTCAGCGAGCTTGGCGACGTAGACGAAGGTTTCACGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS117F02+           TCCTTGGAAGGTGAAGCCATTGGAGCTGCTGCTGCTAACGACGACTGATCTGAAAATGAA
JMFN041D07+           TCCTTGGAAGGTGAAGCCATTGGAGCTGCTGCTGCTAACGACGACTGATCTGAAAATGAA
                      ____________________________________________________________
consensus             TCCTTGGAAGGTGAAGCCATTGGAGCTGCTGCTGCTAACGACGACTGATCTGAAAATGAA