Contig 004738:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF038G01-                                                               TCTTTCA
rJMFF009B12-                                                          ANGCTTCTTTCA
                      ____________________________________________________________
consensus                                                             ANGCTTCTTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF038G01-          GAATGTCTTCAACCTTTCAGCTTTATATTACATAGAACAAACCAGACTACTTGAAAAAAA
rJMFF009B12-          GAATGTCTTCAACCTTTCAGCTTTATATTACATAGAACAAACCAGACTACTTGAAAAAAA
                      ____________________________________________________________
consensus             GAATGTCTTCAACCTTTCAGCTTTATATTACATAGAACAAACCAGACTACTTGAAAAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF038G01-          CACCACCATTTAAGATCAATGGCCGAAAAGGAAGAAGAAGAAAAGGGATTACACTGAAAC
JMFN032J14+                                  CGAAAAGGAAGAAGAAGAAAAGGGATTACACTGAAAC
rJMFF009B12-          CACCACCATTTAAGATCAATGGCCGAAAAGGAAGAAGAAGAAAAGGGATTACACTGAAAC
                      ____________________________________________________________
consensus             CACCACCATTTAAGATCAATGGCCGAAAAGGAAGAAGAAGAAAAGGGATTACACTGAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF038G01-          TATATAGTCATCATCTCAAACATTAGATACTTTACAAACCCTAACACAAACTATGTTATC
JMFN032J14+           TATATAGTCATCATCTCAAACATTAGATACTNTACAAACCCTAACACAAACTATGTTATC
rJMFF009B12-          TATATAGTCATCATCTCAAACATTAGATACTTTACAAACCCTAACACAAACTATGTTATC
                      ____________________________________________________________
consensus             TATATAGTCATCATCTCAAACATTAGATACTTTACAAACCCTAACACAAACTATGTTATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF038G01-          AGAGCCTAAAGCTAACGCCTTTTTCGCCATTTTCATTGCTTCATTTCCTCGCCCTCTTCG
JMFN032J14+           AGAGCCTAAAGCTAACGCCTTTTTCGCCATTTTCATTGCTTCATTTCCTCGCCCTCTTCG
JMFN007A05+                                                  TTCATTTCCTCGCCCTCTTCG
JMFN015A20+                                                                    TCG
rJMFF009B12-          AGAGCCTAAAGCTAACGCCTTTTTCGCCATTTTCATTGCTTCATTTCCTCGCCCTCTTCG
                      ____________________________________________________________
consensus             AGAGCCTAAAGCTAACGCCTTTTTCGCCATTTTCATTGCTTCATTTCCTCGCCCTCTTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF038G01-          CCGGCGACTTGATACTCTTGGGCTTCTTCACCGGAGACTTTACTTTAGACAGGGCCACCT
JMFN032J14+           CCGGCGACTTGATACTCTTGGGCTTCTTCACCGGAGACTTTACTTTAGACAGGGCCACCT
JMFN007A05+           CCGGCGACTTGATACTCTTGGGCTTCTTCACCGGAGACTTTACTTTAGACAGGGCCACCT
JMFN015A20+           CCGGCGACTTGATACTCTTGGGCTTCTTCACCGGAGACTTTACTTTAGACAGGGCCACCT
rJMFF009B12-          CCGGCGACTTGATACTCTTGGGCTTCTTCACCGGAGACTTTACTTTAGACAGGGCCACCT
                      ____________________________________________________________
consensus             CCGGCGACTTGATACTCTTGGGCTTCTTCACCGGAGACTTTACTTTAGACAGGGCCACCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF038G01-          TCTTCACCGGAGTTCTCTTGGCAGGTTTGGCTTTGGCCGCCGGCTTTTTAGCTTTAGACG
JMFN032J14+           TCTTCACCGGAGTTCTCTTGGCAGGTTTGGCTTTGGCCGCCGGCTTTTTAGCTTTAGACG
JMFN007A05+           TCTTCACCGGAGTTCTCTTGGCAGGTTTGGCTTTGGCCGCCGGCTTTTTAGCTTTAGACG
JMFN015A20+           TCTTCACCGGAGTTCTCTTGGCAGGTTTGGCTTTGGCCGCCGGCTTTTTAGCTTTAGACG
rJMFF009B12-          TCTTCACCGGAGTTCTCTTGGCAGGTTTGGCTTTGGCCGCCGGCTTTTTAGCTTTAGACG
                      ____________________________________________________________
consensus             TCTTCACCGGAGTTCTCTTGGCAGGTTTGGCTTTGGCCGCCGGCTTTTTAGCTTTAGACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF038G01-          GGGTTGAAACCTTCTTCTTAGGCTTTTCCACAAGCACCTTCTTTGCAGCCGCAGCTTTGG
JMFN032J14+           GGGTTGAAACCTTCTTCTTAGGCTTTTCCACAAGCACCTTCTTTGCAGCCGCAGCTTTGG
JMFN007A05+           GGGTTGAAACCTTCTTCTTAGGCTTTTCCACAAGCACCTTCTTTGCAGCCGCAGCTTTGG
JMFN015A20+           GGGTTGAAACCTTCTTCTTAGGCTTTTCCACAAGCACCTTCTTTGCAGCCGCAGCTTTGG
JMFF009B12+                                 CTTTTCCACAAGCACCTTCTTTGCAGCCGCAGCTTTGG
rJMFF009B12-          GGGTTGAAACCTTCTTCTTAGGCTTTTCCACAAGCACCTTCTTTGCAGCCGCAGCTTTGG
                      ____________________________________________________________
consensus             GGGTTGAAACCTTCTTCTTAGGCTTTTCCACAAGCACCTTCTTTGCAGCCGCAGCTTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF038G01-          GCTTGGCGGCGACGGTCTTCTTCTTCGGCTCTGCTGCGGCCTTGGGAGCTTTGGGCTTGG
JMFN032J14+           GCTTGGCGGCGACGGTCTTCTTCTTCGGCTCTGCTGCGGCCTTGGGAGCTTTGGGCTTGG
JMFN007A05+           GCTTGGCGGCGACGGTCTTCTTCTTCGGCTCTGCTGCGGCCTTGGGAGCTTTGGGCTTGG
JMFN015A20+           GCTTAGCGGCGACGGTCTTCTTCTTCGGCTCTGCTGCGGCCTTGGGAGCTTTGGGCTTGG
JMFF009B12+           GCTTGGCGGCGACGGTCTTCTTCTTCGGCTCTGCTGCGGCCTTGGGAGCTTTGGGCTTGG
rJMFF009B12-          GCTTGGCGGCGACGGTCTTCTTCTTCGGCTCTGCTGCGGCCTTGGGAGCTTTGGGCTTGG
                      ____________________________________________________________
consensus             GCTTGGCGGCGACGGTCTTCTTCTTCGGCTCTGCTGCGGCCTTGGGAGCTTTGGGCTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF038G01-          AAGCGGGGACGGCGGCGACGGCAGTCTTGGCAGTTCCGGCGAGCTTGAACGAGTTCTTCA
JMFN032J14+           AAGCGGGGACGGCGGCGACGGCAGTCTTGGCAGTTCCGGCGAGCTTGAACGAGTTCTTCA
JMFN007A05+           AAGCGGGGACGGCGGCGACGGCAGTCTTGGCAGTTCCGGCGAGCTTGAACGAGTTCTTCA
JMFN015A20+           AAGCGGGGACGGCGGCGACGGCAGTCTTGGCAGTTCCGGCGAGCTTGAACGAGTTCTTCA
JMFF009B12+           AAGCGGGGACGGCGGCGACGGCAGTCTTGGCAGTTCCGGCGAGCTTGAACGAGTTCTTCA
rJMFF009B12-          AAGCGGGGACGGCGGCGACGGCAGTCTTGGCAGTTCCGGCGAGCTTGAACGAGTTCTTCA
                      ____________________________________________________________
consensus             AAGCGGGGACGGCGGCGACGGCAGTCTTGGCAGTTCCGGCGAGCTTGAACGAGTTCTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF038G01-          CCTTCGTAAGCTTCCCCGACGCCACGAGCTTCTTAAGCTGGACCAGCAACAGCTTCCTGA
JMFN032J14+           CCTTCGTAAGCTTCCCCGACGCCACGAGCTTCTTAAGCTGGACCAGCAACAGCTTCCTGA
JMFN007A05+           CCTTCGTAAGCTTCCCCGACGCCACGAGCTTCTTAAGCTGGACCAGCAACAGCTTCCTGA
JMFN015A20+           CCTTCGTAAGCTTCCCCGACGCCACGAGCTTCTTAAGCTGGACCAGCAACAGCTTCCTGA
JMFF009B12+           CCTTCGTAAGCTTCCCCGACGCCACGAGCTTCTTAAGCTGGACCAGCAACAGCTTCCTGA
rJMFF009B12-          CCTTCGTAAGCTTCCCCGACGCCACGAGCTTCTTAAGCTGGACCAGCAACAGCTTCCTGA
                      ____________________________________________________________
consensus             CCTTCGTAAGCTTCCCCGACGCCACGAGCTTCTTAAGCTGGACCAGCAACAGCTTCCTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF038G01-          AGTTGGGCGGCAATTCCTTCTGTTTCTCCTCGATAAACTTCGCTATCGCCACCTGACTTG
JMFN032J14+           AGTTGGGCGGCAATTCCTTCTGTTTCTCCTCGATAAACTTCGCTATCGCCACCTGACTTG
JMFN007A05+           AGTTGGGCGGCAATTCCTTCTGTTTCTCCTCGATAAACTTCGCTATCGCCACCTGACTTG
JMFN015A20+           AGTTGGGCGGCAATTCCTTCTGTTTCTCCTCGATAAACTTCGCTATCGCCACCTGACTTG
JMFF009B12+           AGTTGGGCGGCAATTCCTTCTGTTTCTCCTCGATAAACTTCGCTATCGCCACCTGACTTG
rJMFF009B12-          AGTTGGGCGGCAATTCCTTCTGTTTCTCCTCGATAAACTTCGCTATCGCCACCTGACTTG
                      ____________________________________________________________
consensus             AGTTGGGCGGCAATTCCTTCTGTTTCTCCTCGATAAACTTCGCTATCGCCACCTGACTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF038G01-          AAACCGGTCCTCTCCTTCAACGCCGCAATCGCCTCCGATATCATCTCAACA         
JMFN032J14+           -AACCGGTCCTCTCCTTCAACGCCGCAATCGCCTCC                        
JMFN007A05+           -AACCGGTCCTCTCCTTCAACGCCGCAATCGCCTCCGATATCATCT              
JMFN015A20+           -AACCGGTCCTCTCCTTCAACGCCGCAATCGCCTCCGATATCATCT              
JMFF009B12+           -AACCGGTCCTCTCCTTCAACGCCGCAATCGCCTCCGATATCATCT              
rJMFF009B12-          -AACCGGTCCTCTCCTTCAACGCCGCAATCGCCTCCGATATCATCTCAACATAAGGAGGA
JMFN037N04+                 GTCCTCTCCTTCAACGCCGCAATCGCCTCCGATATCATGTCAACATAAAGAGGA
                      ____________________________________________________________
consensus             -AACCGGTCCTCTCCTTCAACGCCGCAATCGCCTCCGATATCATCTCAACATAAGGAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF009B12-          TGAGCTCGAGGCTTCTTAGGAGCGGCAGCGGCTTTCTTANGCTTTGCGGCGGCGGCAGCT
JMFN037N04+           TGAGCTCGAGGGTTGTTAGGAGGGGCAGCGGCTTTCTTAGGCTTTGCGGCGGCGGCAGCT
                      ____________________________________________________________
consensus             TGAGCTCGAGGGTTGTTAGGAGGGGCAGCGGCTTTCTTAGGCTTTGCGGCGGCGGCAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF009B12-          T                                                           
JMFN037N04+           TTTCCGGCGGTGGCGGGCGCCATGAGAGTGAAGATATAGATAAGATTTGGTAGAAAAACA
                      ____________________________________________________________
consensus             TTTCCGGCGGTGGCGGGCGCCATGAGAGTGAAGATATAGATAAGATTTGGTAGAAAAACA