Contig 004734:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032B06Sequence615004734 (6)ref|XP_009772618.1|1e-47PREDICTED: small nuclear ribonucleoprotein-associated protein B'-like [Nicotian725004734 (6)
JMFF034A10Sequence466004734 (6)ref|XP_009614812.1|1e-37PREDICTED: small nuclear ribonucleoprotein-associated protein B'-like [Nicotian657004734 (6)
JMFN007B15Sequence575004734 (6)ref|XP_009772618.1|2e-50PREDICTED: small nuclear ribonucleoprotein-associated protein B'-like [Nicotian
JMFN035E14Sequence618004734 (6)ref|XP_004229936.1|3e-47PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B'-like [S

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF034A10- AGGTAAACTCAAATCCAAAAAGGAACCTTGAACCAATTCGACATAGGAG
rJMFF032B06- AGGTAAACTCAAATCCAAAAAGGAACCTTGAACCAATTCGACATAGGAG
                      ____________________________________________________________
consensus AGGTAAACTCAAATCCAAAAAGGAACCTTGAACCAATTCGACATAGGAG
 
. : . : . : . : . : . :
rJMFF034A10- ATATGCATACCACTACAGAGAGGCTCACTAAAATCCAACAGTTACTTAATAAGATTGATT
rJMFF032B06- ATATGCATACCACTACAGAGAGGCTCACTAAAATCCAACAGTTACTTAATAAGATTGATT
                      ____________________________________________________________
consensus ATATGCATACCACTACAGAGAGGCTCACTAAAATCCAACAGTTACTTAATAAGATTGATT
 
. : . : . : . : . : . :
rJMFF034A10- ACACTAAGGCTTTGATCAAACATCTACTAAAATGGCTCGATTGATGGTACATACTGAGTA
rJMFF032B06- ACACTAAGGCTTTGATCAAACATCTACTAAAATGGCTCGATTGATGGTACATACTGAGTA
                      ____________________________________________________________
consensus ACACTAAGGCTTTGATCAAACATCTACTAAAATGGCTCGATTGATGGTACATACTGAGTA
 
. : . : . : . : . : . :
rJMFF034A10- TATTACTGCTGATTCTGGGGAGGTGGCATTCCAGGACGAGGTGGTCCATAGACAGGAACC
rJMFF032B06- TATTACTGCTGATTCTGGGGAGGTGGCATTCCAGGACGAGGTGGTCCATAGACAGGAACC
                      ____________________________________________________________
consensus TATTACTGCTGATTCTGGGGAGGTGGCATTCCAGGACGAGGTGGTCCATAGACAGGAACC
 
. : . : . : . : . : . :
rJMFF034A10- TGCCCACCTGGGGGTGGAGGTGGCATACCAGGGCGAGGAGGTTGTGAGGGCGGGGCTCCA
rJMFF032B06- TGCCCACCTGGGGGTGGAGGTGGCATACCAGGGCGAGGAGGTTGTGAGGGCGGGGCTCCA
                      ____________________________________________________________
consensus TGCCCACCTGGGGGTGGAGGTGGCATACCAGGGCGAGGAGGTTGTGAGGGCGGGGCTCCA
 
. : . : . : . : . : . :
rJMFF034A10- GGCATACCTGGTCTTGGAGGAGCACCAGGAGGAGGTGGACCCCTCATCATCGGAGGTGGA
rJMFF032B06- GGCATACCTGGTCTTGGAGGAGCACCAGGAGGAGGTGGACCCCTCATCATCGGAGGTGGA
                      ____________________________________________________________
consensus GGCATACCTGGTCTTGGAGGAGCACCAGGAGGAGGTGGACCCCTCATCATCGGAGGTGGA
 
. : . : . : . : . : . :
rJMFF034A10- GGCATCATAGGCCGCTGTCCAAACTGGGGAGGGAATGGCCCAGGTTGAGGAGGAGCACCC
rJMFF032B06- GGCATCATAGGCCGCTGTCCAAACTGGGGAGGGAATGGCCCAGGTTGAGGAGGAGCACCC
                      ____________________________________________________________
consensus GGCATCATAGGCCGCTGTCCAAACTGGGGAGGGAATGGCCCAGGTTGAGGAGGAGCACCC
 
. : . : . : . : . : . :
rJMFF034A10- GGTCGGAACTGTGGAGGGGGCATTGGCGGCCCACCAGGTCTACCCATCATGGCCTGCGGC
rJMFF032B06- GGTCGGAACTGTGGAGGGGGCATTGGCGGCCCACCAGGTCTACCCATCATGGCCTGCGGC
JMFN035E14+ ACCCATCATGGCCTGCGGC
                      ____________________________________________________________
consensus GGTCGGAACTGTGGAGGGGGCATTGGCGGCCCACCAGGTCTACCCATCATGGCCTGCGGC
 
. : . : . : . : . : . :
rJMFF034A10- GGAGGCGCCATTGGTGGCCCTCCGCCTGGTGGTCTCACCATAGGCGGCTGCTGAGGCGGG
rJMFF032B06- GGAGGCGCCATTGGTGGCCCTCCGCCTGGTGGTCTCACCATAGGCGGCTGCTGAGGCGGG
JMFN007B15+ CTGAGGCGGG
JMFF032B06+ TAGGCGGCTGCTGAGGCGGG
JMFN035E14+ GGAGGCGCCATTGGTGGCCCTCCGCCTGGTGGTCTCACCATAGGCGGCTGCTGAGGCGGG
                      ____________________________________________________________
consensus GGAGGCGCCATTGGTGGCCCTCCGCCTGGTGGTCTCACCATAGGCGGCTGCTGAGGCGGG
 
. : . : . : . : . : . :
rJMFF034A10- TAATTGATCGGCGGAGCTGAAACCTGAGGCACAGGAGGCCGTGATATCTGAGGCTGCATC
rJMFF032B06- TAATTGATCGGCGGAGCTGAAACCTGAGGCACAGGAGGCCGTGATATCTGAGGCTGCATC
JMFN007B15+ TAATTGATCGCCGTAGCTGAAACCTGAGGCACAGGAGGCCGTGATATCTGAGGCTGCATC
JMFF032B06+ TAATTGATCGGCGGAGCTGAAACCTGAGGCACAGGAGGCCGTGATATCTGAGGCTGCATC
JMFN035E14+ TAATTGATCGGCGGAGCTGAAACCTGAGGCACAGGAGGCCGTGATATCTGAGGCTGCATC
                      ____________________________________________________________
consensus TAATTGATCGGCGGAGCTGAAACCTGAGGCACAGGAGGCCGTGATATCTGAGGCTGCATC
 
. : . : . : . : . : . :
rJMFF034A10- ATTCCGGGAGCAGGCCCACCAACGCCACGAACTGGGCCAGCAAGTCCAGGCTGCGCCTGA
rJMFF032B06- ATTCCGGGAGCAGGCCCACCAACGCCACGAACTGGGCCAGCAAGTCCAGGCTGCGCCTGA
JMFN007B15+ ATTCCGGGAGCAGGCCCACCAACGCCACGAACTGGGCCAGCAAGTCCAGGCTGCGCCTGA
JMFF032B06+ ATTCCGGGAGCAGGCCCACCAACGCCACGAACTGGGCCAGCAAGTCCAGGCTGCGCCTGA
JMFN035E14+ ATTCCGGGAGCAGGCCCACCAACGCCACGAACTGGGCCAGCAAGTCCAGGCTGCGCCTGA
                      ____________________________________________________________
consensus ATTCCGGGAGCAGGCCCACCAACGCCACGAACTGGGCCAGCAAGTCCAGGCTGCGCCTGA
 
. : . : . : . : . : . :
rJMFF034A10- ACCATTGG
rJMFF032B06- ACCATTGGTCCAGTGGGAACACCTCTGCCAGCGGCACGACCCATA-CCGGGTCCCGGAAC
JMFN007B15+ ACCATTGGTCCAGTGGGAACACCTCTGCCAGCGGCACGACCCATA-CCGGGTCCCGGAAC
JMFF032B06+ ACCATTGGTCCAGTGGGAACACCTCTGCCAGCGGCACGACCCATACCCGGGTCCCGGAAC
JMFF034A10+ TCCAGTGGGAACACCTCTGCCAGCGGCACGACCCATA-CCGGGTCCCGGAAC
JMFN035E14+ ACCATTGGTCCAGTGGGAACACCTCTGCCAGCGGCACGACCCATA-CCGGGTCCCGGAAC
                      ____________________________________________________________
consensus ACCATTGGTCCAGTGGGAACACCTCTGCCAGCGGCACGACCCATA-CCGGGTCCCGGAAC
 
. : . : . : . : . : . :
rJMFF032B06- AGCATTCGCAGCGGAAG
JMFN007B15+ AGCATTCGCAGCGGAAGTAGCCTTAACACGGGACTCATCGGGAGGAGGAGGGCCTTCAAC
JMFF032B06+ AGCATTCGCAGCGGAAGTAGCCTTAACACGGGACTCATCGGGAGGAGGAGGGCCTTCAAC
JMFF034A10+ AGCATTCGCAGCGGAAGTAGCCTTAACACGGGACTCATCGGGAGGAGGAGGGCCTTCAAC
JMFN035E14+ AGCATTCGCAGCGGAAGTAGCCTTAACACGGGACTCATCGGGAGGAGGAGGGCCTTCAAC
                      ____________________________________________________________
consensus AGCATTCGCAGCGGAAGTAGCCTTAACACGGGACTCATCGGGAGGAGGAGGGCCTTCAAC
 
. : . : . : . : . : . :
JMFN007B15+ AGTCATGGAGATGACCTCTTCGCCGCGGAGGAGCAGGAGACCAAGAGTGCGGCGGTCTTC
JMFF032B06+ AGTCATGGAGATGACCTCTTCGCCGCGGAGGAGCAGGAGACCAAGAGTGCGGCGGTCTTC
JMFF034A10+ AGTCATGGAGATGACCTCTTCGCCGCGGAGGAGCAGGAGACCAAGAGTGCGGCGGTCTTC
JMFN035E14+ AGTCATGGAGATGACCTCTTCGCCGCGGAGGAGCAGGAGACCAAGAGTGCGGCGGTCTTC
                      ____________________________________________________________
consensus AGTCATGGAGATGACCTCTTCGCCGCGGAGGAGCAGGAGACCAAGAGTGCGGCGGTCTTC
 
. : . : . : . : . : . :
JMFN007B15+ GCGCTCTTCTTTCGAGCCTTTCGTCGGCGGAAGCTTCCGGAACTCCTCGCAGTCGCCGAG
JMFF032B06+ GCGCTCTTCTTTCGAGCCTTTCGTCGGCGGAAGCTTCCGGAACTCCTCGCAGTCGCCGAG
JMFF034A10+ GCGCTCTTCTTTCGAGCCTTTCGTCGGCGGAAGCTTCCGGAACTCCTCGCAGTCGCCGAG
JMFN035E14+ GCGCTCTTCTTTCGAGCCTTTCGTCGGCGGAAGCTTCCGGAACTCCTCGCAGTCGCCGAG
                      ____________________________________________________________
consensus GCGCTCTTCTTTCGAGCCTTTCGTCGGCGGAAGCTTCCGGAACTCCTCGCAGTCGCCGAG
 
. : . : . : . : . : . :
JMFN007B15+ AACGAGGTTCATGTGGCGGTCAAACGCCATGAACTTGCCAACCAGCTGACGACCATCCTG
JMFF032B06+ AACGAGGTTCATGTGGCGGTCAAACGCCATGAACTTGCCAACCAGCTGACGACCATCCTG
JMFF034A10+ AACGAGGTTCATGTGGCGGTCAAACGCCATGAACTTGCCAACCAGCTGACGACCATCCTG
JMFN035E14+ AACGAGGTTCATGTGGCGGTCAAACGCCATGAACTTGCCAACCAGCTGACGACCATCCTG
                      ____________________________________________________________
consensus AACGAGGTTCATGTGGCGGTCAAACGCCATGAACTTGCCAACCAGCTGACGACCATCCTG
 
. : . : . : . : . : . :
JMFN007B15+ GATCGTGACCCGCATCCGATAATTGATGTATTGGAGCATCTTCGAACTCTTCGACATCGA
JMFF032B06+ GATCGTGACCCGCATCCGATAATTGATGTATTGGAGCATCTTCGAACTCTTCGACATCGA
JMFF034A10+ GATCGTGACCCGCATCCGATAATTGATGTATTGGAGCATCTTCGAACTCTTCGACATCGA
JMFN035E14+ GATCGTGACCCGCATCCGATAATTGATGTATTGGAGCATCTTCGAACTCTTCGACATCGA
                      ____________________________________________________________
consensus GATCGTGACCCGCATCCGATAATTGATGTATTGGAGCATCTTCGAACTCTTCGACATCGA
 
. : . : . : . : . : . :
JMFN007B15+ CAT
JMFF032B06+ CAT
JMFF034A10+ CAT
JMFN035E14+ CATTTTCGCTGAATCTGTAGCAGAGACGTCTCTAGGGTTCTAGCTGTGATTGTGAGTGCC
                      ____________________________________________________________
consensus CATTTTCGCTGAATCTGTAGCAGAGACGTCTCTAGGGTTCTAGCTGTGATTGTGAGTGCC