Contig 004734:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032B06Sequence615004734 (6)ref|XP_009772618.1|1e-47PREDICTED: small nuclear ribonucleoprotein-associated protein B'-like [Nicotian725004734 (6)
JMFF034A10Sequence466004734 (6)ref|XP_009614812.1|1e-37PREDICTED: small nuclear ribonucleoprotein-associated protein B'-like [Nicotian657004734 (6)
JMFN007B15Sequence575004734 (6)ref|XP_009772618.1|2e-50PREDICTED: small nuclear ribonucleoprotein-associated protein B'-like [Nicotian
JMFN035E14Sequence618004734 (6)ref|XP_004229936.1|3e-47PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B'-like [S

Alignment

This contig is upended


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rJMFF034A10-                     AGGTAAACTCAAATCCAAAAAGGAACCTTGAACCAATTCGACATAGGAG
rJMFF032B06-                     AGGTAAACTCAAATCCAAAAAGGAACCTTGAACCAATTCGACATAGGAG
                      ____________________________________________________________
consensus                        AGGTAAACTCAAATCCAAAAAGGAACCTTGAACCAATTCGACATAGGAG
 
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rJMFF034A10-          ATATGCATACCACTACAGAGAGGCTCACTAAAATCCAACAGTTACTTAATAAGATTGATT
rJMFF032B06-          ATATGCATACCACTACAGAGAGGCTCACTAAAATCCAACAGTTACTTAATAAGATTGATT
                      ____________________________________________________________
consensus             ATATGCATACCACTACAGAGAGGCTCACTAAAATCCAACAGTTACTTAATAAGATTGATT
 
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rJMFF034A10-          ACACTAAGGCTTTGATCAAACATCTACTAAAATGGCTCGATTGATGGTACATACTGAGTA
rJMFF032B06-          ACACTAAGGCTTTGATCAAACATCTACTAAAATGGCTCGATTGATGGTACATACTGAGTA
                      ____________________________________________________________
consensus             ACACTAAGGCTTTGATCAAACATCTACTAAAATGGCTCGATTGATGGTACATACTGAGTA
 
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rJMFF034A10-          TATTACTGCTGATTCTGGGGAGGTGGCATTCCAGGACGAGGTGGTCCATAGACAGGAACC
rJMFF032B06-          TATTACTGCTGATTCTGGGGAGGTGGCATTCCAGGACGAGGTGGTCCATAGACAGGAACC
                      ____________________________________________________________
consensus             TATTACTGCTGATTCTGGGGAGGTGGCATTCCAGGACGAGGTGGTCCATAGACAGGAACC
 
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rJMFF034A10-          TGCCCACCTGGGGGTGGAGGTGGCATACCAGGGCGAGGAGGTTGTGAGGGCGGGGCTCCA
rJMFF032B06-          TGCCCACCTGGGGGTGGAGGTGGCATACCAGGGCGAGGAGGTTGTGAGGGCGGGGCTCCA
                      ____________________________________________________________
consensus             TGCCCACCTGGGGGTGGAGGTGGCATACCAGGGCGAGGAGGTTGTGAGGGCGGGGCTCCA
 
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rJMFF034A10-          GGCATACCTGGTCTTGGAGGAGCACCAGGAGGAGGTGGACCCCTCATCATCGGAGGTGGA
rJMFF032B06-          GGCATACCTGGTCTTGGAGGAGCACCAGGAGGAGGTGGACCCCTCATCATCGGAGGTGGA
                      ____________________________________________________________
consensus             GGCATACCTGGTCTTGGAGGAGCACCAGGAGGAGGTGGACCCCTCATCATCGGAGGTGGA
 
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rJMFF034A10-          GGCATCATAGGCCGCTGTCCAAACTGGGGAGGGAATGGCCCAGGTTGAGGAGGAGCACCC
rJMFF032B06-          GGCATCATAGGCCGCTGTCCAAACTGGGGAGGGAATGGCCCAGGTTGAGGAGGAGCACCC
                      ____________________________________________________________
consensus             GGCATCATAGGCCGCTGTCCAAACTGGGGAGGGAATGGCCCAGGTTGAGGAGGAGCACCC
 
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rJMFF034A10-          GGTCGGAACTGTGGAGGGGGCATTGGCGGCCCACCAGGTCTACCCATCATGGCCTGCGGC
rJMFF032B06-          GGTCGGAACTGTGGAGGGGGCATTGGCGGCCCACCAGGTCTACCCATCATGGCCTGCGGC
JMFN035E14+                                                    ACCCATCATGGCCTGCGGC
                      ____________________________________________________________
consensus             GGTCGGAACTGTGGAGGGGGCATTGGCGGCCCACCAGGTCTACCCATCATGGCCTGCGGC
 
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rJMFF034A10-          GGAGGCGCCATTGGTGGCCCTCCGCCTGGTGGTCTCACCATAGGCGGCTGCTGAGGCGGG
rJMFF032B06-          GGAGGCGCCATTGGTGGCCCTCCGCCTGGTGGTCTCACCATAGGCGGCTGCTGAGGCGGG
JMFN007B15+                                                             CTGAGGCGGG
JMFF032B06+                                                   TAGGCGGCTGCTGAGGCGGG
JMFN035E14+           GGAGGCGCCATTGGTGGCCCTCCGCCTGGTGGTCTCACCATAGGCGGCTGCTGAGGCGGG
                      ____________________________________________________________
consensus             GGAGGCGCCATTGGTGGCCCTCCGCCTGGTGGTCTCACCATAGGCGGCTGCTGAGGCGGG
 
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rJMFF034A10-          TAATTGATCGGCGGAGCTGAAACCTGAGGCACAGGAGGCCGTGATATCTGAGGCTGCATC
rJMFF032B06-          TAATTGATCGGCGGAGCTGAAACCTGAGGCACAGGAGGCCGTGATATCTGAGGCTGCATC
JMFN007B15+           TAATTGATCGCCGTAGCTGAAACCTGAGGCACAGGAGGCCGTGATATCTGAGGCTGCATC
JMFF032B06+           TAATTGATCGGCGGAGCTGAAACCTGAGGCACAGGAGGCCGTGATATCTGAGGCTGCATC
JMFN035E14+           TAATTGATCGGCGGAGCTGAAACCTGAGGCACAGGAGGCCGTGATATCTGAGGCTGCATC
                      ____________________________________________________________
consensus             TAATTGATCGGCGGAGCTGAAACCTGAGGCACAGGAGGCCGTGATATCTGAGGCTGCATC
 
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rJMFF034A10-          ATTCCGGGAGCAGGCCCACCAACGCCACGAACTGGGCCAGCAAGTCCAGGCTGCGCCTGA
rJMFF032B06-          ATTCCGGGAGCAGGCCCACCAACGCCACGAACTGGGCCAGCAAGTCCAGGCTGCGCCTGA
JMFN007B15+           ATTCCGGGAGCAGGCCCACCAACGCCACGAACTGGGCCAGCAAGTCCAGGCTGCGCCTGA
JMFF032B06+           ATTCCGGGAGCAGGCCCACCAACGCCACGAACTGGGCCAGCAAGTCCAGGCTGCGCCTGA
JMFN035E14+           ATTCCGGGAGCAGGCCCACCAACGCCACGAACTGGGCCAGCAAGTCCAGGCTGCGCCTGA
                      ____________________________________________________________
consensus             ATTCCGGGAGCAGGCCCACCAACGCCACGAACTGGGCCAGCAAGTCCAGGCTGCGCCTGA
 
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rJMFF034A10-          ACCATTGG                                                    
rJMFF032B06-          ACCATTGGTCCAGTGGGAACACCTCTGCCAGCGGCACGACCCATA-CCGGGTCCCGGAAC
JMFN007B15+           ACCATTGGTCCAGTGGGAACACCTCTGCCAGCGGCACGACCCATA-CCGGGTCCCGGAAC
JMFF032B06+           ACCATTGGTCCAGTGGGAACACCTCTGCCAGCGGCACGACCCATACCCGGGTCCCGGAAC
JMFF034A10+                   TCCAGTGGGAACACCTCTGCCAGCGGCACGACCCATA-CCGGGTCCCGGAAC
JMFN035E14+           ACCATTGGTCCAGTGGGAACACCTCTGCCAGCGGCACGACCCATA-CCGGGTCCCGGAAC
                      ____________________________________________________________
consensus             ACCATTGGTCCAGTGGGAACACCTCTGCCAGCGGCACGACCCATA-CCGGGTCCCGGAAC
 
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rJMFF032B06-          AGCATTCGCAGCGGAAG                                           
JMFN007B15+           AGCATTCGCAGCGGAAGTAGCCTTAACACGGGACTCATCGGGAGGAGGAGGGCCTTCAAC
JMFF032B06+           AGCATTCGCAGCGGAAGTAGCCTTAACACGGGACTCATCGGGAGGAGGAGGGCCTTCAAC
JMFF034A10+           AGCATTCGCAGCGGAAGTAGCCTTAACACGGGACTCATCGGGAGGAGGAGGGCCTTCAAC
JMFN035E14+           AGCATTCGCAGCGGAAGTAGCCTTAACACGGGACTCATCGGGAGGAGGAGGGCCTTCAAC
                      ____________________________________________________________
consensus             AGCATTCGCAGCGGAAGTAGCCTTAACACGGGACTCATCGGGAGGAGGAGGGCCTTCAAC
 
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JMFN007B15+           AGTCATGGAGATGACCTCTTCGCCGCGGAGGAGCAGGAGACCAAGAGTGCGGCGGTCTTC
JMFF032B06+           AGTCATGGAGATGACCTCTTCGCCGCGGAGGAGCAGGAGACCAAGAGTGCGGCGGTCTTC
JMFF034A10+           AGTCATGGAGATGACCTCTTCGCCGCGGAGGAGCAGGAGACCAAGAGTGCGGCGGTCTTC
JMFN035E14+           AGTCATGGAGATGACCTCTTCGCCGCGGAGGAGCAGGAGACCAAGAGTGCGGCGGTCTTC
                      ____________________________________________________________
consensus             AGTCATGGAGATGACCTCTTCGCCGCGGAGGAGCAGGAGACCAAGAGTGCGGCGGTCTTC
 
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JMFN007B15+           GCGCTCTTCTTTCGAGCCTTTCGTCGGCGGAAGCTTCCGGAACTCCTCGCAGTCGCCGAG
JMFF032B06+           GCGCTCTTCTTTCGAGCCTTTCGTCGGCGGAAGCTTCCGGAACTCCTCGCAGTCGCCGAG
JMFF034A10+           GCGCTCTTCTTTCGAGCCTTTCGTCGGCGGAAGCTTCCGGAACTCCTCGCAGTCGCCGAG
JMFN035E14+           GCGCTCTTCTTTCGAGCCTTTCGTCGGCGGAAGCTTCCGGAACTCCTCGCAGTCGCCGAG
                      ____________________________________________________________
consensus             GCGCTCTTCTTTCGAGCCTTTCGTCGGCGGAAGCTTCCGGAACTCCTCGCAGTCGCCGAG
 
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JMFN007B15+           AACGAGGTTCATGTGGCGGTCAAACGCCATGAACTTGCCAACCAGCTGACGACCATCCTG
JMFF032B06+           AACGAGGTTCATGTGGCGGTCAAACGCCATGAACTTGCCAACCAGCTGACGACCATCCTG
JMFF034A10+           AACGAGGTTCATGTGGCGGTCAAACGCCATGAACTTGCCAACCAGCTGACGACCATCCTG
JMFN035E14+           AACGAGGTTCATGTGGCGGTCAAACGCCATGAACTTGCCAACCAGCTGACGACCATCCTG
                      ____________________________________________________________
consensus             AACGAGGTTCATGTGGCGGTCAAACGCCATGAACTTGCCAACCAGCTGACGACCATCCTG
 
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JMFN007B15+           GATCGTGACCCGCATCCGATAATTGATGTATTGGAGCATCTTCGAACTCTTCGACATCGA
JMFF032B06+           GATCGTGACCCGCATCCGATAATTGATGTATTGGAGCATCTTCGAACTCTTCGACATCGA
JMFF034A10+           GATCGTGACCCGCATCCGATAATTGATGTATTGGAGCATCTTCGAACTCTTCGACATCGA
JMFN035E14+           GATCGTGACCCGCATCCGATAATTGATGTATTGGAGCATCTTCGAACTCTTCGACATCGA
                      ____________________________________________________________
consensus             GATCGTGACCCGCATCCGATAATTGATGTATTGGAGCATCTTCGAACTCTTCGACATCGA
 
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JMFN007B15+           CAT                                                         
JMFF032B06+           CAT                                                         
JMFF034A10+           CAT                                                         
JMFN035E14+           CATTTTCGCTGAATCTGTAGCAGAGACGTCTCTAGGGTTCTAGCTGTGATTGTGAGTGCC
                      ____________________________________________________________
consensus             CATTTTCGCTGAATCTGTAGCAGAGACGTCTCTAGGGTTCTAGCTGTGATTGTGAGTGCC