Contig 004732:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010B10Sequence459004732 (12)dbj|BAH97744.1|3e-44hypothetical protein [Hypochaeris radicata]433004732 (12)dbj|BAH97744.1|2e-44hypothetical protein [Hypochaeris radicata]
JMFF011M13Sequence426004732 (12)dbj|BAH97744.1|1e-43hypothetical protein [Hypochaeris radicata]
JMFF013A03Sequence438004732 (12)dbj|BAH97744.1|2e-44hypothetical protein [Hypochaeris radicata]
JMFF022E08Sequence466004732 (12)dbj|BAH97744.1|3e-44hypothetical protein [Hypochaeris radicata]438004732 (12)dbj|BAH97744.1|2e-44hypothetical protein [Hypochaeris radicata]
JMFF022N24Sequence447004732 (12)dbj|BAH97744.1|3e-44hypothetical protein [Hypochaeris radicata]424004732 (12)dbj|BAH97744.1|2e-44hypothetical protein [Hypochaeris radicata]
JMFF023D04Sequence475004732 (12)dbj|BAH97744.1|4e-44hypothetical protein [Hypochaeris radicata]450004732 (12)dbj|BAH97744.1|3e-44hypothetical protein [Hypochaeris radicata]
JMFN025M14Sequence460004732 (12)dbj|BAH97744.1|3e-44hypothetical protein [Hypochaeris radicata]
JMFN034P20Sequence439004732 (12)dbj|BAH97744.1|2e-44hypothetical protein [Hypochaeris radicata]

Alignment

This contig is upended


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rJMFF022N24+                       CCCCGTTCCGAAGGTCGGGAAGAGGAGAGAATCATATTTCATATCAT
rJMFF013A03+                           GTTCCGAAGGTCGGGAAGAGGAGAGAATCATATTTCATATCAT
rJMFF011M13+                       CCCCGTTCCGAAGGTCGGGAAGAGGAGAGAATCATATTTCATATCAT
JMFF023D04-                        CCCCGTTCCGAAGGTCGGGAAGAGGAGAGAATCATATTTCATATCAT
JMFF022N24-                        CCCCGTTCCGAAGGTCGGGAAGAGGAGAGAATCATATTTCATATCAT
rJMFF023D04+                       CCCCGTTCCGAAGGTCGGGAAGAGGAGAGAATCATATTTCATATCAT
rJMFF022E08+                                GAAGGTCGGGAAGAGGAGAGAATCATATTTCATATCAT
rJMFF010B10+                                          AAGAGGAGAGAATCATATTTCATATCAT
JMFF022E08-                                 GAAGGTCGGGAAGAGGAGAGAATCATATTTCATATCAT
JMFF010B10-                                           AAGAGGAGAGAATCATATTTCATATCAT
JMFN025M14-                             TTCCGAAGGTCGGGAAGAGGAGAGAATCATATTTCATATCAT
JMFN034P20-                                                    GAATCATATTTCATATCAT
                      ____________________________________________________________
consensus                          CCCCGTTCCGAAGGTCGGGAAGAGGAGAGAATCATATTTCATATCAT
 
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rJMFF022N24+          TAGGGTCTCAGGCCAACGCAACCATGGGCGGCGGAAACGCTCAGAAATCTAAGATGGCTC
rJMFF013A03+          TAGGGTCTCAGGCCAACGCAACCATGGGCGGCGGAAACGCTCAGAAATCTAAGATGGCTC
rJMFF011M13+          TAGGGTCTCAGGCCAACGCAACCATGGGCGGCGGAAACGCTCAGAAATNTAAGATGGCTC
JMFF023D04-           TAGGGTCTCAGGCCAACGCAACCATGGGCGGCGGAAACGCTCAGAAATCTAAGATGGCTC
JMFF022N24-           TAGGGTCTCAGGCCAACGCAACCATGGGCGGCGGAAACGCTCAGAAATCTAAGATGGCTC
rJMFF023D04+          TAGGGTCTCAGGCCAACGCAACCATGGGCGGCGGAAACGCTCAGAAATCTAAGATGGCTC
rJMFF022E08+          TAGGGTCTCAGGCCAACGCAACCATGGGCGGCGGAAACGCTCAGAAATCTAAGATGGCTC
rJMFF010B10+          TAGGGTCTCAGGCCAACGCAACCATGGGCGGCGGAAACGCTCAGAAATCTAAGATGGCTC
JMFF022E08-           TAGGGTCTCAGGCCAACGCAACCATGGGCGGCGGAAACGCTCAGAAATCTAAGATGGCTC
JMFF010B10-           TAGGGTCTCAGGCCAACGCAACCATGGGCGGCGGAAACGCTCAGAAATCTAAGATGGCTC
JMFN025M14-           TAGGGTCTCAGGCCAACGCAACCATGGGCGGCGGAAACGCTCAGAAATCTAAGATGGCTC
JMFN034P20-           TAGGGTCTCAGGCCAACGCAACCATGGGCGGCGGAAACGCTCAGAAATCTAAGATGGCTC
                      ____________________________________________________________
consensus             TAGGGTCTCAGGCCAACGCAACCATGGGCGGCGGAAACGCTCAGAAATCTAAGATGGCTC
 
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rJMFF022N24+          GCGAGAAGAATCTCGAGAAGATGAAAGCAGCCGGGAAAGGAAGTCAGCTGGAAAGCAACA
rJMFF013A03+          GCGAGAAGAATCTCGAGAAGATGAAAGCAGCCGGGAAAGGAAGTCAGCTGGAAAGCAACA
rJMFF011M13+          GCGAGAAGAATCTCGAGAAGATGAAAGCAGCCGGGAAAGGAAGTCAGCTGGAAAGCAACA
JMFF023D04-           GCGAGAAGAATCTCGAGAAGATGAAAGCAGCCGGGAAAGGAAGTCAGCTGGAAAGCAACA
JMFF022N24-           GCGAGAAGAATCTCGAGAAGATGAAAGCAGCCGGGAAAGGAAGTCAGCTGGAAAGCAACA
rJMFF023D04+          GCGAGAAGAATCTCGAGAAGATGAAAGCAGCCGGGAAAGGAAGTCAGCTGGAAAGCAACA
rJMFF022E08+          GCGAGAAGAATCTCGAGAAGATGAAAGCAGCCGGGAAAGGAAGTCAGCTGGAAAGCAACA
rJMFF010B10+          GCGAGAAGAATCTCGAGAAGATGAAAGCAGCCGGGAAAGGAAGTCAGCTGGAAAGCAACA
JMFF022E08-           GCGAGAAGAATCTCGAGAAGATGAAAGCAGCCGGGAAAGGAAGTCAGCTGGAAAGCAACA
JMFF010B10-           GCGAGAAGAATCTCGAGAAGATGAAAGCAGCCGGGAAAGGAAGTCAGCTGGAAAGCAACA
JMFN025M14-           GCGAGAAGAATCTCGAGAAGATGAAAGCAGCCGGGAAAGGAAGTCAGCTGGAAAGCAACA
JMFN034P20-           GCGAGAAGAATCTCGAGAAGATGAAAGCAGCCGGGAAAGGAAGTCAGCTGGAAAGCAACA
                      ____________________________________________________________
consensus             GCGAGAAGAATCTCGAGAAGATGAAAGCAGCCGGGAAAGGAAGTCAGCTGGAAAGCAACA
 
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rJMFF022N24+          AGAAGGCCATGAATATCCAGTGCAAAGTGTGTATGCAGACATTTATGTGCACAACATCAG
rJMFF013A03+          AGAAGGCCATGAATATCCAGTGCAAAGTGTGTATGCAGACATTTATGTGCACAACATCAG
rJMFF011M13+          AGAAGGCCATGAATATCCAGTGCAAAGTGTGTATGCAGACATTTATGTGCACAACATCAG
JMFF023D04-           AGAAGGCCATGAATATCCAGTGCAAAGTGTGTATGCAGACATTTATGTGCACAACATCAG
JMFF022N24-           AGAAGGCCATGAATATCCAGTGCAAAGTGTGTATGCAGACATTTATGTGCACAACATCAG
rJMFF023D04+          AGAAGGCCATGAATATCCAGTGCAAAGTGTGTATGCAGACATTTATGTGCACAACATCAG
rJMFF022E08+          AGAAGGCCATGAATATCCAGTGCAAAGTGTGTATGCAGACATTTATGTGCACAACATCAG
rJMFF010B10+          AGAAGGCCATGAATATCCAGTGCAAAGTGTGTATGCAGACATTTATGTGCACAACATCAG
JMFF022E08-           AGAAGGCCATGAATATCCAGTGCAAAGTGTGTATGCAGACATTTATGTGCACAACATCAG
JMFF010B10-           AGAAGGCCATGAATATCCAGTGCAAAGTGTGTATGCAGACATTTATGTGCACAACATCAG
JMFN025M14-           AGAAGGCCATGAATATCCAGTGCAAAGTGTGTATGCAGACATTTATGTGCACAACATCAG
JMFN034P20-           AGAAGGCCATGAATATCCAGTGCAAAGTGTGTATGCAGACATTTATGTGCACAACATCAG
                      ____________________________________________________________
consensus             AGAAGGCCATGAATATCCAGTGCAAAGTGTGTATGCAGACATTTATGTGCACAACATCAG
 
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rJMFF022N24+          AGGTGAAGTGCAGGGAACATGCTGAAGCGAAACACCCCAAGGCTGATGTTTCTACTTGTT
rJMFF013A03+          AGGTGAAGTGCAGGGAACATGCTGAAGCGAAACACCCCAAGGCTGATGTTTCTACTTGTT
rJMFF011M13+          AGGTGAAGTGCAGGGAACATGCTGAAGCGAAACACCCCAAGGCTGATGTTTCTACTTGTT
JMFF023D04-           AGGTGAAGTGCAGGGAACATGCTGAAGCGAAACACCCCAAGGCTGATGTTTCTACTTGTT
JMFF022N24-           AGGTGAAGTGCAGGGAACATGCTGAAGCGAAACACCCCAAGGCTGATGTTTCTACTTGTT
rJMFF023D04+          AGGTGAAGTGCAGGGAACATGCTGAAGCGAAACACCCCAAGGCTGATGTTTCTACTTGTT
rJMFF022E08+          AGGTGAAGTGCAGGGAACATGCTGAAGCGAAACACCCCAAGGCTGATGTTTCTACTTGTT
rJMFF010B10+          AGGTGAAGTGCAGGGAACATGCTGAAGCGAAACACCCCAAGGCTGATGTTTCTACTTGTT
JMFF022E08-           AGGTGAAGTGCAGGGAACATGCTGAAGCGAAACACCCCAAGGCTGATGTTTCTACTTGTT
JMFF010B10-           AGGTGAAGTGCAGGGAACATGCTGAAGCGAAACACCCCAAGGCTGATGTTTCTACTTGTT
JMFN025M14-           AGGTGAAGTGCAGGGAACATGCTGAAGCGAAACACCCCAAGGCTGATGTTTCTACTTGTT
JMFN034P20-           AGGTGAAGTGCAGGGAACATGCTGAAGCGAAACACCCCAAGGCTGATGTTTCTACTTGTT
                      ____________________________________________________________
consensus             AGGTGAAGTGCAGGGAACATGCTGAAGCGAAACACCCCAAGGCTGATGTTTCTACTTGTT
 
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rJMFF022N24+          TTCCTCATCTCAAAAAGTGAAATATTTCTGTTGTTATAAACTATTTATAGATATGGTAAT
rJMFF013A03+          TTCCTCATCTCAAAAAGTGAAATATTTCTGTTGTTATAAACTATTTATAGATATGGTAAT
rJMFF011M13+          TTCCTCATCTCAAAAAGTGAAATATTTCTGTTGTTATAAACTATTTATAGATATGGTAAT
JMFF023D04-           TTCCTCATCTCAA                                               
JMFF022N24-           TTCCTCATCTCAAAAAGTGAAATATTTCTGTTGTTATAAACTATTTATAGATATGGTAAT
rJMFF023D04+          TTCCTCATCTCAAAAAGTGAAATATTTCTGTTGTTATAAACTATTTATAGATATGGTAAT
rJMFF022E08+          TTCCTCATCTCAAAAAGTGAAATATTTCTGTTGTTATAAACTATTTATAGATATGGTAAT
rJMFF010B10+          TTCCTCATCTCAAAAAGTGAAATATTTCTGTTGTTATAAACTATTTATAGATATGGTAAT
JMFF022E08-           TTCCTCATCTCAA                                               
JMFF010B10-           TTCCTCATCTCAA                                               
JMFN025M14-           TTCCTCATCTCAAAAAGTGAAATATTTCTGTTGTTATAAACTATTTATAGATATGGTAAT
JMFN034P20-           TTCCTCATCTCAAAAAGTGAAATATTTCTGTTGTTATAAACTATTTATAGATATGGTAAT
                      ____________________________________________________________
consensus             TTCCTCATCTCAAAAAGTGAAATATTTCTGTTGTTATAAACTATTTATAGATATGGTAAT
 
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rJMFF022N24+          ATCTGTCACCTGTTTCAACTATGACAGTCCAAGCAAGTTATTGAATGTGCATTGCATGGT
rJMFF013A03+          ATCTGTCACCTGTTTCAACTATGACAGTCCAAGCAAGTTATTGAATGTGCATTGCATGGT
rJMFF011M13+          ATCTGTCACCTGTTTCAACTATGACAGTCCAAGCAAGTTATTGAATGTGCATTGC     
JMFF022N24-           ATCTGTCACCTGTTTCAACTATGACAGTCCAAGCAAGTTATTGAATGTGCATTGCATGGT
rJMFF023D04+          ATCTGTCACCTGTTTCAACTATGACAGTCCAAGCAAGTTATTGAATGTGCATTGCATGGT
rJMFF022E08+          ATCTGTCACCTGTTTCAACTATGACAGTCCAAGCAAGTTATTGAATGTGCATTGCATGGT
rJMFF010B10+          ATCTGTCACCTGTTTCAACTATGACAGTCCAAGCAAGTTATTGAATGTGCATTGCATGGT
JMFN025M14-           ATCTGTCACCTGTTTCAACTATGACAGTCCAAGCAAGTTATTGAATGTGCATTGCATGGT
JMFN034P20-           ATCTGTCACCTGTTTCAACTATGACAGTCCAAGCAAGTTATTGAATGTGCATTGCATGGT
                      ____________________________________________________________
consensus             ATCTGTCACCTGTTTCAACTATGACAGTCCAAGCAAGTTATTGAATGTGCATTGCATGGT
 
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rJMFF022N24+          TGTTTATGAGACTCCCA                                           
rJMFF013A03+          TGTTTATGAGACTCCCAAGT                                        
JMFF022N24-           TGTTTATGAGACTCCCAAGTTGTTTAAG                                
rJMFF023D04+          TGTTTATGAGACTCCCAAGTTGTTTAAGTGACAAATATATATA                 
rJMFF022E08+          TGTTTATGAGACTCCCAAGTTGTTTAAGTGACAAATATAT                    
rJMFF010B10+          TGTTTATGAGACTCCCAAGTTGTTTAAGTGACAAATATATAT                  
JMFN025M14-           TGTTTATGAGACTCCCAAGTTGTTTAAGTGACAAATATATATATACATATTTTCATCC  
JMFN034P20-           TGTTTATGAGACTCCCAAGTTGTTTAAGTGACAAATATATATATACATATTTTCATCCAG
                      ____________________________________________________________
consensus             TGTTTATGAGACTCCCAAGTTGTTTAAGTGACAAATATATATATACATATTTTCATCCAG