| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002L23 | Sequence | 414 | 004719 (9) | emb|CDO98433.1| | 2e-65 | unnamed protein product [Coffea canephora] | |||||
| JMFF013O05 | Sequence | 524 | 004719 (9) | emb|CDO98433.1| | 7e-65 | unnamed protein product [Coffea canephora] | 546 | 004719 (9) | emb|CDO98433.1| | 5e-48 | unnamed protein product [Coffea canephora] |
| JMFF032K23 | Sequence | 542 | 004719 (9) | emb|CDO98433.1| | 3e-64 | unnamed protein product [Coffea canephora] | 587 | 004719 (9) | emb|CDO98433.1| | 6e-64 | unnamed protein product [Coffea canephora] |
| JMFF049N19 | Sequence | 636 | 004719 (9) | emb|CDO98433.1| | 3e-64 | unnamed protein product [Coffea canephora] | 605 | 004719 (9) | emb|CDO98433.1| | 5e-64 | unnamed protein product [Coffea canephora] |
| JMFN020A12 | Sequence | 614 | 004719 (9) | emb|CDO98433.1| | 3e-64 | unnamed protein product [Coffea canephora] | |||||
| JMFN030O18 | Sequence | 515 | 004719 (9) | ref|XP_002533414.1| | 3e-42 | NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial precursor, putativ | |||||
This contig is upended
. : . : . : . : . : . :
JMFN030O18+ AGCAAGGAAAAGAAAG
rJMFF049N19- GAAAAGAAAG
JMFF049N19+ GAAAAGAAAG
JMFN020A12+ GAAAAGAAAG
____________________________________________________________
consensus AGCAAGGAAAAGAAAG
. : . : . : . : . : . :
JMFN030O18+ GAGTTTCTCCTTTATTTGCATTTCAAGTTTTAATCCACATCCCTCAATTGCAAAGAGAAG
rJMFF049N19- GAGTTTCTCCTTTATTTGCATTTCAAGTTTTAATCCACATCCCTCAATTGCAAAGAGAAG
rJMFF032K23- GTTTCTCCTTTATTTGCATTTCAAGTTTTAATCCACATCCCTCAATTGCAAAGAGAAG
JMFF049N19+ GAGTTTCTCCTTTATTGCCATTTCAAGTTTTAATCCACATCCCTCAATTGCAAAGAGAAG
JMFF032K23+ TTGCAAAGAGAAG
rJMFF013O05- AGTTTTAATCCACATCCCTCAATTGCAAAGAGAAG
JMFN020A12+ GAGTTTCTCCTTTATTTGCATTTCAAGTTTTAATCCACATCCCTCAATTGCAAAGAGAAG
____________________________________________________________
consensus GAGTTTCTCCTTTATTTGCATTTCAAGTTTTAATCCACATCCCTCAATTGCAAAGAGAAG
. : . : . : . : . : . :
JMFN030O18+ CAACACAATGGAAGATGAAAGCCAATGTTAAACCATTGGCATCTGCAGTTATATGTTTAA
rJMFF049N19- CAACACAATGGAAGATGAAAGCCAATGTTAAACCATTGGCATCTGCAGTTATATGTTTAA
rJMFF032K23- CAACACAATGGAAGATGAAAGCCAATGTTAAACCATTGGCATCTGCAGTTATATGTTTAA
JMFF049N19+ CAACACAATGGAAGATGAAAGCCAATGTTAAACCATTGGCATCTGCAGTTATATGTNTAA
JMFF032K23+ CAACACAATGGAAGATGAAAGCCAATGTTAAACCATTGGCATCTGCAGTTATATGTTTAA
rJMFF013O05- CAACACAATGGAAGATGAAAGCCAATGTTAAACCATTGGCATCTGCAGTTATATGTTTAA
JMFF013O05+ TCTGCAGTTATATGTTTAA
JMFN020A12+ CAACACAATGGAAGATGAAAGCCAATGTTAAACCATTGGCATCTGCAGTTATATGTTTAA
____________________________________________________________
consensus CAACACAATGGAAGATGAAAGCCAATGTTAAACCATTGGCATCTGCAGTTATATGTTTAA
. : . : . : . : . : . :
JMFN030O18+ TACAAAAAGGTCTCAGGGGAGAAAGACAGTAATAGCAACACAAGTTAAGCTGACGGGTAG
rJMFF049N19- TACAAAAAGGTCTCAGGGGAGAAAGACAGTAATAGCAACACAAGTTAAGCTGACGGGTAG
rJMFF032K23- TACAAAAAGGTCTCAGGGGAGAAAGACAGTAATAGCAACACAAGTTAAGCTGACGGGTAG
JMFF049N19+ TACAAAAAGGTCTCAGGGGAGAAAGACAGTAATAGCAACACAAGTTAAGCTGACGGGTAG
JMFF032K23+ TACAAAAAGGTCTCAGGGGAGAAAGACAGTAATAGCAACACAAGTTAAGCTGACGGGTAG
rJMFF013O05- TACAAAAAGGTCTCAGGGGAGAAAGACAGTAATAGCAACACAAGTTAAGCTGACGGGTAG
JMFF013O05+ TACAAAAAGGTCTCAGGGGAGAAAGACAGTAATAGCAACACAAGTTAAGCTGACGGGTAG
JMFN020A12+ TACAAAAAGGTCTCAGGGGAGAAAGACAGTAATAGCAACACAAGTTAAGCTGACGGGTAG
____________________________________________________________
consensus TACAAAAAGGTCTCAGGGGAGAAAGACAGTAATAGCAACACAAGTTAAGCTGACGGGTAG
. : . : . : . : . : . :
JMFN030O18+ GCAGGTCTCTAACTTCTCCGCTTTATACTTTGAATAAATCAAACAACTCAATCACCTAAA
rJMFF049N19- GCAGGTCTCTAACTTCTCCGCTTTATACTTTGAATAAATCAAACAACTCAATCACCTAAA
rJMFF032K23- GCAGGTCTCTAACTTCTCCGCTTTATACTTTGAATAAATCAAACAACTCAAACACCTAAA
JMFF002L23+ TGAATAAATCAAACAACTCAATCACCTAAA
JMFF049N19+ GCAGGTCTCTAACTTCTCCGCTTTATACTTTGAATAAATCAAACAACTCAATCACCTAAA
JMFF032K23+ GCAGGTCTCTAACTTCTCCGCTTTATACTTTGAATAAATCAAACAACTCAAACACCTAAA
rJMFF013O05- GCAGGTCTCTAACTTCTCCGCTTTATACTTTGAATAAATCAAACAACTCAATCACCTAAA
JMFF013O05+ GCAGGTCTCTAACTTCTCCGCTTTATACTTTGAATAAATCAAACAACTCAATCACCTAAA
JMFN020A12+ GCAGGTCTCTAACTTCTCCGCTTTATACTTTGAATAAATCAAACAACTCAATCACCTAAA
____________________________________________________________
consensus GCAGGTCTCTAACTTCTCCGCTTTATACTTTGAATAAATCAAACAACTCAATCACCTAAA
. : . : . : . : . : . :
JMFN030O18+ CACGATTGAGAAAAGAGCCAGTTTCATTCGGACTCTACAGCTTCAACCTTAGGACCATGG
rJMFF049N19- CACGATTGAGAAAAGAGCCAGTTTCATTCGGACTCTACAGCTTCAACCTTAGGACCATGG
rJMFF032K23- CACGATTGAGAAAAGAGCCAGTTTCATTCGGACTCTACAGCTTCAACCTTAGGACCATGG
JMFF002L23+ CACGATTGAGAAAAGAGCCAGTTTCATTCGGACTCTACAGCTTCAACCTTAGGACCATGG
JMFF049N19+ CACGATTGAGAAAAGAGCCAGTTTCATTCGGACTCTACAGCTTCAACCTTAGGACCATGG
JMFF032K23+ CACGATTGAGAAAAGAGCCAGTTTCATTCGGACTCTACAGCTTCAACCTTAGGACCATGG
rJMFF013O05- CACGATTGAGAAAAGAGCCAGTTTCATTCGGACTCTACAGCTTCAACCTTAGGACCATGG
JMFF013O05+ CACGATTGAGAAAAGAGCCAGTTTCATTCGGACTCTACAGCTTCAACCTTAGGACCATGG
JMFN020A12+ CACGATTGAGAAAAGAGCCAGTTTCATTCGGACTCTACAGCTTCAACCTTAGGACCATGG
____________________________________________________________
consensus CACGATTGAGAAAAGAGCCAGTTTCATTCGGACTCTACAGCTTCAACCTTAGGACCATGG
. : . : . : . : . : . :
JMFN030O18+ AGAGACGGAGGGCGGTGGTCCTTGCCCCAGCCAATCCCGCGAGTAGCGTCGAGGTACTGT
rJMFF049N19- AGAGACGGAGGGCGGTGGTCCTTGCCCCAGCCAATCCCGCGAGTAGCGTCGAGGTACTGT
rJMFF032K23- AGAGACGGAGGGCGGTGGTCCTTGCCCCAGCCAATCCCGCGAGTAGCGTCGAGGTACTGT
JMFF002L23+ AGAGACGGAGGGCGGTGGTCCTTGCCCCAGCCAATCCCGCGAGTAGCGTCGAGGTACTGT
JMFF049N19+ AGAGACGGAGGGCGGTGGTCCTTGCCCCAGCCAATCCCGCGAGTAGCGTCGAGGTACTGT
JMFF032K23+ AGAGACGGAGGGCGGTGGTCCTTGCCCCAGCCAATCCCGCGAGTAGCGTCGAGGTACTGT
rJMFF013O05- AGAGACGGAGGGCGGTGGTCCTTGCCCCAGCCAATCCCGCGAGTAGCGTCGAGGTACTGT
JMFF013O05+ AGAGACGGAGGGCGGTGGTCCTTGCCCCAGCCAATCCCGCGAGTAGCGTCGAGGTACTGT
JMFN020A12+ AGAGACGGAGGGCGGTGGTCCTTGCCCCAGCCAATCCCGCGAGTAGCGTCGAGGTACTGT
____________________________________________________________
consensus AGAGACGGAGGGCGGTGGTCCTTGCCCCAGCCAATCCCGCGAGTAGCGTCGAGGTACTGT
. : . : . : . : . : . :
JMFN030O18+ TGGACGAGGTGTCGGCACTTCTGGAGGTGGTTGACGCCCTCGATGCGGTAGCACCACCGC
rJMFF049N19- TGGACGAGGTGTCGGCACTTCTGGAGGTGGTTGACGCCCTCGATGCGGTAGCACCACCGC
rJMFF032K23- TGGACGAGGTGTCGGCACTTCTGGAGGTGGTTGACGCCCTCGATGCGGTAGCACCACCGC
JMFF002L23+ TGGACGAGGTGTCGGCACTTCTGGAGGTGGTTGACGCCCTCGATGCGGTAGCACCACCGC
JMFF049N19+ TGGACGAGGTGTCGGCACTTCTGGAGGTGGTTGACGCCCTCGATGCGGTAGCACCACCGC
JMFF032K23+ TGGACGAGGTGTCGGCACTTCTGGAGGTGGTTGACGCCCTCGATGCGGTAGCACCACCGC
rJMFF013O05- TGGACGAGGTGTCGGCACTTCTGGAGGTGGNTGACGCCCTCGATGCGGNAGCACCACCGC
JMFF013O05+ TGGACGAGGTGTCGGCACTTCTGGAGGTGGTTGACGCCCTCGATGCGGTAGCACCACCGC
JMFN020A12+ TGGACGAGGTGTCGGCACTTCTGGAGGTGGTTGACGCCCTCGATGCGGTAGCACCACCGC
____________________________________________________________
consensus TGGACGAGGTGTCGGCACTTCTGGAGGTGGTTGACGCCCTCGATGCGGTAGCACCACCGC
. : . : . : . : . : . :
JMFN030O18+ ACCTTCTCGCGGAGGATCTTTGCCTTCTCGATGTCGATCCATTTTTCACGCACCAAGTGC
rJMFF049N19- ACCTTCTCGCGGAGGATCTTTGCCTTCTCGATGTCGATCCACTTTTCACGCACCAAGTGC
rJMFF032K23- ACCTTCTCGCGGAGGATCTTTGCCTTCTCGATGTCGATCCACTTTTCACGCACCAAGTGC
JMFF002L23+ ACCTTCTCGCGGAGGATCTTTGCCTTCTCGATGTCGATCCACTTTTCACGCACCAAGTGC
JMFF049N19+ ACCTTCTCGCGGAGGATCTTTGCCTTCTCGATGTCGATCCACTTTTCACGCACCAAGTGC
JMFF032K23+ ACCTTCTCGCGGAGGATCTTTGCCTTCTCGATGTCGATCCACTTTTCACGCACCAAGTGC
rJMFF013O05- ACCTTCTCGCGGAGGATCTTTGCCTTCTCGATGTCGATCCACTTTTCACGCACCAAGTGC
JMFF013O05+ ACCTTCTCGCGGAGGATCTTTGCCTTCTCGATGTCGATCCACTTTTCACGCACCAAGTGC
JMFN020A12+ ACCTTCTCGCGGAGGATCTTTGCCTTCTCGATGTCGATCCACTTTTCACGCACCAAGTGC
____________________________________________________________
consensus ACCTTCTCGCGGAGGATCTTTGCCTTCTCGATGTCGATCCACTTTTCACGCACCAAGTGC
. : . : . : . : . : . :
JMFN030O18+ TCCCTCATCTCCAGCATCG
rJMFF049N19- TCCCTCATCTCCAGCATCGCAACCGGGTCCTTATACGGGTTCTCCGGGTCGAAGTCATCT
rJMFF032K23- TCCCTCATCTCCAGCATCGCAACCGGGTCCTTATACGGGTTCTCCGGGTCGAAGTCATCT
JMFF002L23+ TCCCTCATCTCCAGCATCGCAACCGGGTCCTTATACGGGTTCTCCGGGTCGAAGTCATCT
JMFF049N19+ TCCCTCATCTCCAGCATCGCAACCGGGTCCTTATACGGGTTCTCCGGGTCGAAGTCATCT
JMFF032K23+ TCCCTCATCTCCAGCATCGCAACCGGGTCCTTATACGGGTTCTCCGGGTCGAAGTCATCT
rJMFF013O05- TCCCTCATCTCCAGCATCGCAACCGGGTCCTTATACGGGTTCTCCGGG
JMFF013O05+ TCCCTCATCTCCAGCATCGCAACCGGGTCCTTATACGGGTTCTCCGGGTCGAAGTCATCT
JMFN020A12+ TCCCTCATCTCCAGCATCGCAACCGGGTCCTTATACGGGTTCTCCGGGTCGAAGTCATCT
____________________________________________________________
consensus TCCCTCATCTCCAGCATCGCAACCGGGTCCTTATACGGGTTCTCCGGGTCGAAGTCATCT
. : . : . : . : . : . :
rJMFF049N19- GGAGCTCCCTCATCGAACACAACTCCCTTTTTCCTCCCCATTCTCTCTGATCTCT
rJMFF032K23- GGAGCTCCCTCATCGAACACAACTCCCTTTTTCCTCCCCATTCTCTCTG
JMFF002L23+ GGAGCTCCCTCATCGAACACAACTCCCTTTTTCCTCCCCAT
JMFF049N19+ GGAGCTCCCTCATCGAACACAACTCCCTTTTTCCTCCCCAT
JMFF032K23+ GGAGCTCCCTCATCGAACACAACTCCCTTTTTCCTCCCCATTCTCTCTG
JMFF013O05+ GGAGCTCCCTCATCGAACACAACTCCCTTTTTCCTCCCCAT
JMFN020A12+ GGAGCTCCCTCATCGAACACAACTCCCTTTTTCCTCCCCATTCTCTCTGATCTCTGTGTG
____________________________________________________________
consensus GGAGCTCCCTCATCGAACACAACTCCCTTTTTCCTCCCCATTCTCTCTGATCTCTGTGTG