Contig 004718:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036F16Sequence591023745emb|CDP00341.1|1e-38unnamed protein product [Coffea canephora]674004718 (3)emb|CDP00341.1|1e-28unnamed protein product [Coffea canephora]
JMFN009L11Sequence618004718 (3)emb|CDP00341.1|1e-39unnamed protein product [Coffea canephora]
JMFN019G17Sequence619004718 (3)emb|CDP00341.1|1e-39unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF036F16- CCTTGCTGTACATACATGCATCACTTATTATTTTCTTAATT
                      ____________________________________________________________
consensus CCTTGCTGTACATACATGCATCACTTATTATTTTCTTAATT
 
. : . : . : . : . : . :
rJMFF036F16- ATAGGGAATACATGCAAAGTACAAGTTTAAGTAGTACAGCATATTTAATTAATTCAAACT
                      ____________________________________________________________
consensus ATAGGGAATACATGCAAAGTACAAGTTTAAGTAGTACAGCATATTTAATTAATTCAAACT
 
. : . : . : . : . : . :
rJMFF036F16- TTGCTCTAGCCGAATATTGGGAGTATTCAATTCCCTTATTCAAAGCTCACTCACTCAATT
                      ____________________________________________________________
consensus TTGCTCTAGCCGAATATTGGGAGTATTCAATTCCCTTATTCAAAGCTCACTCACTCAATT
 
. : . : . : . : . : . :
rJMFF036F16- ACCATCTTTAATAGGGGAATTTGACATTATTCCCATTTGTACTGTCGCAAATCCNAAAGG
                      ____________________________________________________________
consensus ACCATCTTTAATAGGGGAATTTGACATTATTCCCATTTGTACTGTCGCAAATCCNAAAGG
 
. : . : . : . : . : . :
rJMFF036F16- AATGCCCAGGACATTTGATCTTCTTACCCTTGTTGCTAGCACNAAATGTAATGTAATCCA
JMFN009L11+ AAATGTAATGTAATCCA
JMFN019G17+ AAATGTAATGTAATCCA
                      ____________________________________________________________
consensus AATGCCCAGGACATTTGATCTTCTTACCCTTGTTGCTAGCACNAAATGTAATGTAATCCA
 
. : . : . : . : . : . :
rJMFF036F16- AAACAGCGTTCACTCCCTTTTCGTCTTCTCGACATGATACCGTTATTTCACCTAATCCAG
JMFN009L11+ AAACAGCGTTCACTCCCTNTTCGTCTTCTCGACATGATACCGTTATTTCACCTAATCCAG
JMFN019G17+ AAACAGCGTTCACTCCCTTTTCGTCTTCTCGACATGATACCGTTATTTCACCTAATCCAG
                      ____________________________________________________________
consensus AAACAGCGTTCACTCCCTTTTCGTCTTCTCGACATGATACCGTTATTTCACCTAATCCAG
 
. : . : . : . : . : . :
rJMFF036F16- CTTTTGCTATAGCTTTATTGATTGCATCTCCCGGGTAATATTTACCATTCGGTTTAATTC
JMFN009L11+ CTTTTGCTATAGCTTTATTGATTGCATCTCCCGGGTAATATTTACCATTCGGTTTAATTC
JMFN019G17+ CTTTTGCTATAGCTTTATTGATTGCATCTCCCGGGTAATATTTACCATTCGGTTTAATTC
                      ____________________________________________________________
consensus CTTTTGCTATAGCTTTATTGATTGCATCTCCCGGGTAATATTTACCATTCGGTTTAATTC
 
. : . : . : . : . : . :
rJMFF036F16- CTGCATCANCTAGAAGTTTGAGGAGATTAATTTGTTTGTAGACTCTGAGAGCAGCTGCAA
JMFN009L11+ CTGCATCAGCTAGAAGTTTGAGGAGATTAATTTGTTTGTAGACTCTGAGAGCAGCTGCAA
JMFN019G17+ CTGCATCAGCTAGAAGTTTGAGGAGATTAATTTGTTTGTAGACTCTGAGAGCAGCTGCAA
                      ____________________________________________________________
consensus CTGCATCAGCTAGAAGTTTGAGGAGATTAATTTGTTTGTAGACTCTGAGAGCAGCTGCAA
 
. : . : . : . : . : . :
rJMFF036F16- AGTAATCATGCTGATTGAATACTGTTTCAGCACAAGTACCGTACTCCACCCATTCTTCCT
JMFN009L11+ AGTAATCATGCTGATTGAATACTGTTTCAGCACAAGTACCGTACTCCACCCATTCTTCCT
JMFN019G17+ AGTAATCATGCTGATTGAATACTGTTTCAGCACAAGTACCGTACTCCACCCATTCTTCCT
                      ____________________________________________________________
consensus AGTAATCATGCTGATTGAATACTGTTTCAGCACAAGTACCGTACTCCACCCATTCTTCCT
 
. : . : . : . : . : . :
rJMFF036F16- TCCACAACTTCTTGCTATCTCTACTGGGACAACTCANTGAGGGNCAATACTTTTGCAAAC
JMFN009L11+ TCCACAACTTCTTGCTATCTCTACTGGGACAACTCAATGAGGGCCAATACTTTTGCAAAC
JMFN019G17+ TCCACAACTTCTTGCTATCTCTACTGGGACAACTCAATGAGGGCCAATACTTTTGCAAAC
                      ____________________________________________________________
consensus TCCACAACTTCTTGCTATCTCTACTGGGACAACTCAATGAGGGCCAATACTTTTGCAAAC
 
. : . : . : . : . : . :
rJMFF036F16- TCGGCACTAAATCTGCAATCTTTGACGGATGGAATTTGGTTCCGGTTGTGCAATTTGCGT
JMFN009L11+ TCGGCACTAAATCTGCAATCTTTGACGGTTGGAATTTGGTTCCGGTTGTGCAATTTGCGT
JMFN019G17+ TCGGCACTAAATCTGCAATCTTTGACGGTTGGAATTTGGTTCCGGTTGTGCAATTTGCGT
                      ____________________________________________________________
consensus TCGGCACTAAATCTGCAATCTTTGACGGTTGGAATTTGGTTCCGGTTGTGCAATTTGCGT
 
. : . : . : . : . : . :
rJMFF036F16- TTGTCCCTCCATTACTAGAGTAAAATGCTTGAA
JMFN009L11+ TTGTCCCTCCATTACTAGAGTAAAATGCTTGAAATTCATGAATGACAAAGTCATTCAAAG
JMFN019G17+ TTGTCCCTCCATTACTAGAGTAAAATGCTTGAAATTCATGAATGACAAAGTCATTCAAAG
                      ____________________________________________________________
consensus TTGTCCCTCCATTACTAGAGTAAAATGCTTGAAATTCATGAATGACAAAGTCATTCAAAG
 
. : . : . : . : . : . :
JMFN009L11+ AAGGGCTTCCTTTCTTTGGGAGGCAACACCCTTCCTTGCTCTGACACTGGGTCTTTGGCC
JMFN019G17+ AAGGGCTTCCTTTCTTTGGGAGGCAACACCCTTCCTTGCTCTGACACTGGGTCTTTGGCC
                      ____________________________________________________________
consensus AAGGGCTTCCTTTCTTTGGGAGGCAACACCCTTCCTTGCTCTGACACTGGGTCTTTGGCC
 
. : . : . : . : . : . :
JMFN009L11+ ATTTGAGACTGATGAAAAAGTAATCAGGTTTGATATCAGCGGTATAGGCTATAGTAGAAA
JMFN019G17+ ATTTGAGACTGATGAAAAAGTAATCAGGTTTGATATCAGCGGTATAGGCTATAGTAGAAA
                      ____________________________________________________________
consensus ATTTGAGACTGATGAAAAAGTAATCAGGTTTGATATCAGCGGTATAGGCTATAGTAGAAA
 
. : . : . : . : . : . :
JMFN009L11+ GGGATGCCAAAGAGAGTGTAGTTAGAAGAAGAAAACAGTG
JMFN019G17+ GGGATGCCAAAGAGAGTGTAGTTAGAAGAAGAAAACAGTGAAAAGCTTCATGCTTCTTAG
                      ____________________________________________________________
consensus GGGATGCCAAAGAGAGTGTAGTTAGAAGAAGAAAACAGTGAAAAGCTTCATGCTTCTTAG