Contig 004707:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN011F16Sequence556004707 (3)ref|XP_009608955.1|2e-66PREDICTED: probable inactive dual specificity protein phosphatase-like At4g1859
JMSF032A10Sequence679004707 (3)ref|XP_009608955.1|1e-65PREDICTED: probable inactive dual specificity protein phosphatase-like At4g1859649004707 (3)ref|XP_009608955.1|7e-66PREDICTED: probable inactive dual specificity protein phosphatase-like At4g1859

Alignment

This contig is upended


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rJMSF032A10+                                                 GATAGTCCCGCCGGCATCCGT
JMSF032A10-                                                  GATAGTCCCGCCGGCATCCGT
                      ____________________________________________________________
consensus                                                    GATAGTCCCGCCGGCATCCGT
 
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rJMSF032A10+          ACATAAACGGCAGGAGGGTTTTGCCGAATTGCCAGAACGGATTAACAGTTTGCTCCTACC
JMSF032A10-           ACATAAACGGCAGGAGGGTTTTGCCGAATTGCCAGAACGGATTAACAGTTTGCTCCTACC
                      ____________________________________________________________
consensus             ACATAAACGGCAGGAGGGTTTTGCCGAATTGCCAGAACGGATTAACAGTTTGCTCCTACC
 
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rJMSF032A10+          AGTTTGGATCTTCTTGCCGGCTTCAATAATTGCCGATTCTTTTGCAAAACCCAAATTGCC
JMSF032A10-           AGTTTGGATCTTCTTGCCGGCTTCAATAATTGCCGATTCTTTTGCAAAACCCAAATTGCC
JMFN011F16+                                                       CAAAACCCAAATTGCC
                      ____________________________________________________________
consensus             AGTTTGGATCTTCTTGCCGGCTTCAATAATTGCCGATTCTTTTGCAAAACCCAAATTGCC
 
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rJMSF032A10+          ACTGCAATGGAAGCCTCAAACACTTGTGATACAGGTTCTGATCTGAAACCCGAGGTCATA
JMSF032A10-           ACTGCAATGGAAGCCTCAAACACTTGTGATACAGGTTCTGATCTGAAACCCGAGGTCATA
JMFN011F16+           ACTGCAATGGAAGCCTCAAACACTTGTGATACAGGTTCTGATCTGAAACCCGAGGTCATA
                      ____________________________________________________________
consensus             ACTGCAATGGAAGCCTCAAACACTTGTGATACAGGTTCTGATCTGAAACCCGAGGTCATA
 
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rJMSF032A10+          TATCGCTGCAAGAAATGCCGGAGAATTGTTGCTTCAGCAGATCAAGTTGTGCCTCATCAG
JMSF032A10-           TATCGCTGCAAGAAATGCCGGAGAATTGTTGCTTCAGCAGATCAAGTTGTGCCTCATCAG
JMFN011F16+           TATCGCTGCAAGAAATGCCGGAGAATTGTTGCTTCAGCAGATCAAGTTGTGCCTCATCAG
                      ____________________________________________________________
consensus             TATCGCTGCAAGAAATGCCGGAGAATTGTTGCTTCAGCAGATCAAGTTGTGCCTCATCAG
 
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rJMSF032A10+          CGTGGAGGCGGCCAAAGATGTTTTAAGTGGAAAAAGAGGAGTGATGGTGATGCTGAACCC
JMSF032A10-           CGTGGAGGCGGCCAAAGATGTTTTAAGTGGAAAAAGAGGAGTGATGGTGATGCTGAACCC
JMFN011F16+           CGTGGAGGCGGCCAAAGATGTTTTAAGTGGAAAAAGAGGAGTGATGGTGATGCTGAACCC
                      ____________________________________________________________
consensus             CGTGGAGGCGGCCAAAGATGTTTTAAGTGGAAAAAGAGGAGTGATGGTGATGCTGAACCC
 
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rJMSF032A10+          GAATGCTCGTCTATTTTCGTGGAACCCATGAAGTGGATGCAAACATTGGAAGAAGGTTGT
JMSF032A10-           GAATGCTCGTCTATTTTCGTGGAACCCATGAAGTGGATGCAAACATTGGAAGAAGGTTGT
JMFN011F16+           GAATGCTCGTCTATTTTCGTGGAACCCATGAAGTGGATGCAAACATTGGAAGAAGGTTGT
                      ____________________________________________________________
consensus             GAATGCTCGTCTATTTTCGTGGAACCCATGAAGTGGATGCAAACATTGGAAGAAGGTTGT
 
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rJMSF032A10+          GTGCAGGATAAGCTTCAGTGCGTGGGCTGCAAAGCGCGCCTCGGCTACTTTAACTGGGCA
JMSF032A10-           GTGCAGGATAAGCTTCAGTGCGTGGGCTGCAAAGCGCGCCTCGGCTACTTTAACTGGGCA
JMFN011F16+           GTGCAGGATAAGCTTCAGTGCGTGGGCTGCAAAGCGCGCCTCGGCTACTTTAACTGGGCA
                      ____________________________________________________________
consensus             GTGCAGGATAAGCTTCAGTGCGTGGGCTGCAAAGCGCGCCTCGGCTACTTTAACTGGGCA
 
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rJMSF032A10+          GGCATGCAATGCAACTGTGGAGCATGGGTTAACCCTGCCTTTCAGCTGCACAAAAGTCGC
JMSF032A10-           GGCATGCAATGCAACTGTGGAGCATGGGTTAACCCTGCCTTTCAGCTGCACAAAAGTCGC
JMFN011F16+           GGCATGCAATGCAACTGTGGAGCATGGGTTAACCCTGCCTTTCAGCTGCACAAAAGTCGC
                      ____________________________________________________________
consensus             GGCATGCAATGCAACTGTGGAGCATGGGTTAACCCTGCCTTTCAGCTGCACAAAAGTCGC
 
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rJMSF032A10+          CTAGATGAATGCCGCCCTTGAGTAAACACGTTTTTATTGCATAAACCTAGAGTAATAGTA
JMSF032A10-           CTAGATGAATGCCGCCCTTGAGTAAACACGTTTTTATTGCATAAACCTAGAGTAATAGTA
JMFN011F16+           CTAGATGAATGCCGCCCTTGAGTAAACACGTTTTTATTGCATAAACCTAGAGTAATAGTA
                      ____________________________________________________________
consensus             CTAGATGAATGCCGCCCTTGAGTAAACACGTTTTTATTGCATAAACCTAGAGTAATAGTA
 
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rJMSF032A10+          CATTGTAGTTGAGTAATATGTAAATCAGTTTTGATAATTTTCATGTTTCTTGAAACTCTT
JMSF032A10-           CATTGTAGTTGAGTAATATGTAAATCAGTTTTGATAATTTTCATGTTTCTTGAAACTCTT
JMFN011F16+           CATTGTAGTTGAGTAATATGTAAATCAGTTTTGATAATTTTCATGTTTCTTGAAACTCTT
                      ____________________________________________________________
consensus             CATTGTAGTTGAGTAATATGTAAATCAGTTTTGATAATTTTCATGTTTCTTGAAACTCTT
 
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rJMSF032A10+          GGAGTATCAATGATTCCCAATGGATCTT                                
JMSF032A10-           GGAGTATCAATGATTCCCAATGGATCTTTGTCTAGTTGTAATACAAGATTCTCTGAGT  
JMFN011F16+           GGAGTATCAATGATTCCCAATGGATCTTTGTCTAGTTGTAATACAAGATTCTCTGAGTAT
                      ____________________________________________________________
consensus             GGAGTATCAATGATTCCCAATGGATCTTTGTCTAGTTGTAATACAAGATTCTCTGAGTAT