Contig 004706:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN011C07Sequence625004706 (5)gb|KJB75158.1|6e-11hypothetical protein B456_012G027700 [Gossypium raimondii]
JMFN011M20Sequence625004706 (5)gb|KJB75158.1|1e-11hypothetical protein B456_012G027700 [Gossypium raimondii]
JMFN028C17Sequence630004706 (5)ref|XP_004301214.1|2e-07PREDICTED: miraculin-like [Fragaria vesca subsp. vesca] ref|XP_011464438.1| PRED
JMFN037C13Sequence594004706 (5)gb|KJB75158.1|5e-11hypothetical protein B456_012G027700 [Gossypium raimondii]
JMFN043M23Sequence612004706 (5)gb|KJB75158.1|6e-11hypothetical protein B456_012G027700 [Gossypium raimondii]

Alignment

This contig is upended


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JMFN028C17+                                                                 ATGATC
                      ____________________________________________________________
consensus                                                                   ATGATC
 
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JMFN028C17+           CACCCAATACATAATATATATTATGTATGTTAAGGCGCTAGCTAGAAAGTGGCATGGGCG
JMFN011M20+                                      TGTTAAGGCGCTAGCTAGAAAGTGGCATGGGCG
                      ____________________________________________________________
consensus             CACCCAATACATAATATATATTATGTATGTTAAGGCGCTAGCTAGAAAGTGGCATGGGCG
 
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JMFN028C17+           TGGGGCGTGGTGGCATTATACTTGGAGAAGGTGAACTGGAGCGGCTTAACACCAAAGCCT
JMFN011M20+           TGGGGCGTGGTGGCATTATACTTGGAGAAGGTGAACTGGAGCGGCTTAACACCAAAGCCT
JMFN043M23+                                                         TAACACCAAAGCCT
JMFN037C13+                                                              CCAAAGCCT
JMFN011C07+                                                         TAACACCAAAGCCT
                      ____________________________________________________________
consensus             TGGGGCGTGGTGGCATTATACTTGGAGAAGGTGAACTGGAGCGGCTTAACACCAAAGCCT
 
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JMFN028C17+           ATGCCCAAACGGTTGTATCCATTCTGCTGTATCAACCCAACGGGGTAGCAAACGGGCACG
JMFN011M20+           ATGCCCAAACGGTTGTATCCATTCTGCTGTATCAACCCAACGGGGTAGCAAACGGGCACG
JMFN043M23+           ATGCCCAAACGGTTGTATCCATTCTGCTGTATCAACCCAACGGGGTAGCAAACGGGCACG
JMFN037C13+           ATGCCCAAACGGTTGTATCCATTCTGCTGTATCAACCCAACGGGGTAGCAAACGGGCACG
JMFN011C07+           ATGCCCAAACGGTTGTATCCATTCTGCTGTATCAACCCAACGGGGTAGCAAACGGGCACG
                      ____________________________________________________________
consensus             ATGCCCAAACGGTTGTATCCATTCTGCTGTATCAACCCAACGGGGTAGCAAACGGGCACG
 
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JMFN028C17+           CGGGGCACTGGGATTGTTACACAATAAGCGATCTTATATCCCGACCACTCTTTCTGGACC
JMFN011M20+           CGGGGCACTGGGATTGTTACACAATAAGCGATCTTATATCCCGACCACTCTTTCTGGACC
JMFN043M23+           CGGGGCACTGGGATTGTTACACAATAAGCGATCTTATATCCCGACCACTCTTTCTGGACC
JMFN037C13+           CGGGGCACTGGGATTGTTACACAATAAGCGATCTTATATCCCGACCACTCTTTCTGGACC
JMFN011C07+           CGGGGCACTGGGATTGTTACACAATAAGCGATCTTATATCCCGACCACTCTTTCTGGACC
                      ____________________________________________________________
consensus             CGGGGCACTGGGATTGTTACACAATAAGCGATCTTATATCCCGACCACTCTTTCTGGACC
 
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JMFN028C17+           TGGAATAAGGCGCCGCCGACGCCGGCGGTTGGATCTGTCGTGACGTATTTCCGGAAGACA
JMFN011M20+           TGGAATAAGGCGCCGCCGACGCCGGCGGTTGGATCTGTCGTGACGTATTTCCGGAAGACA
JMFN043M23+           TGGAATAAGGCGCCGCCGACGCCGGCGGTTGGATCTGTCGTGACGTATTTCCGGAAGACA
JMFN037C13+           TGGAATAAGGCGCCGCCGACGCCGGCGGTTGGATCTGTCGTGACGTATTTCCGGAAGACA
JMFN011C07+           TGGAATAAGGCGCCGCCGACGCCGGCGGTTGGATCTGTCGTGACGTATTTCCGGAAGACA
                      ____________________________________________________________
consensus             TGGAATAAGGCGCCGCCGACGCCGGCGGTTGGATCTGTCGTGACGTATTTCCGGAAGACA
 
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JMFN028C17+           TCGACGTCAGCTAATCCCCAAAAGATCTCTTGGATACATAATAGCCCCGCGGCGGAGACA
JMFN011M20+           TCGACGTCAGCTAATCCCCAAAAGATCTCTTGGATACATAATAGCCCCGCGGCGGAGACA
JMFN043M23+           TCGACGTCAGCTAATCCCCAAAAGATCTCTTGGATACATAATAGCCCCGCGGCGGAGACA
JMFN037C13+           TCGACGTCAGCTAATCCCCAAAAGATCTCTTGGATACATAATAGCCCCGCGGCGGAGACA
JMFN011C07+           TCGACGTCAGCTAATCCCCAAAAGATCTCTTGGATACATAATAGCCCCGCGGCGGAGACA
                      ____________________________________________________________
consensus             TCGACGTCAGCTAATCCCCAAAAGATCTCTTGGATACATAATAGCCCCGCGGCGGAGACA
 
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JMFN028C17+           GGAAACCGGACGGTGTATGAAATGCCTTCCTTGACGACGTTGCCGGCGGTGACGTTGGCG
JMFN011M20+           GGAAACCGGACGGTGTATGAAATGCCTTCCTTGACGACGTTGCCGGCGGTGACGTTGGCG
JMFN043M23+           GGAAACCGGACGGTGTATGAAATGCCTTCCTTGACGACGTTGCCGGCGGTGACGTTGGCG
JMFN037C13+           GGAAACCGGACGGTGTATGAAATGCCTTCCTTGACGACGTTGCCGGCGGTGACGTTGGCG
JMFN011C07+           GGAAACCGGACGGTGTATGAAATGCCTTCCTTGACGACGTTGCCGGCGGTGACGTTGGCG
                      ____________________________________________________________
consensus             GGAAACCGGACGGTGTATGAAATGCCTTCCTTGACGACGTTGCCGGCGGTGACGTTGGCG
 
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JMFN028C17+           GGGGTGTTAAAGATGATGGGCCAGCCCAGGATGGAGGACTTGGAGAATATGCTGCACTGA
JMFN011M20+           GGGGTGTTAAAGATGATGGGCCAGCCCAGGATGGAGGACTTGGAGAATATGCTGCACTGA
JMFN043M23+           GGGGTGTTAAAGATGATGGGCCAGCCCAGGATGGAGGACTTGGAGAATATGCTGCACTGA
JMFN037C13+           GGGGTGTTAAAGATGATGGGCCAGCCCAGGATGGAGGACTTGGAGAATATGCTGCACTGA
JMFN011C07+           GGGGTGTTAAAGATGATGGGCCAGCCCAGGATGGAGGACTTGGAGAATATGCTGCACTGA
                      ____________________________________________________________
consensus             GGGGTGTTAAAGATGATGGGCCAGCCCAGGATGGAGGACTTGGAGAATATGCTGCACTGA
 
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JMFN028C17+           ACGACGTCGTGGGAGCAACCTTTGGTTTGATTCTTGATGTCTATTAGGCATAGTCCCGGC
JMFN011M20+           ACGACGTCGTGGGAGCAACCTTTGGTTTGATTCTTGATGTCTATTAGGCATAGTCCCGGC
JMFN043M23+           ACGACGTCGTGGGAGCAACCTTTGGTTTGATTCTTGATGTCTATTAGGCATAGTCCCGGC
JMFN037C13+           ACGACGTCGTGGGAGCAACCTTTGGTTTGATTCTTGATGTCTATTAGGCATAGTCCCGGC
JMFN011C07+           ACGACGTCGTGGGAGCAACCTTTGGTTTGATTCTTGATGTCTATTAGGCATAGTCCCGGC
                      ____________________________________________________________
consensus             ACGACGTCGTGGGAGCAACCTTTGGTTTGATTCTTGATGTCTATTAGGCATAGTCCCGGC
 
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JMFN028C17+           TGGAAGATGAAAACTTTGGAGAGGGCGTTGTATGGTAGCCCCAGTT-AAGCTCCTTGCCT
JMFN011M20+           TGGAAGATGAAAACTTTGGAGAGGGCGTTGTATGGTAGCCCCAGTTGAAGCTCCTTGCCT
JMFN043M23+           TGGAAGATGAAAACTTTGGAGAGGGCGTTGTATGGTAGCCCCAGTTGAAGCTCCTTGCCT
JMFN037C13+           TGGAAGATGAAAACTTTGGAGAGGGCGTTGTATGGTAGCCCCAGTTGAAGCTCCTTGCCT
JMFN011C07+           TGGAAGATGAAAACTTTGGAGAGGGCGTTGTATGGTAGCCCCAGTTGAAGCTCCTTGCCT
                      ____________________________________________________________
consensus             TGGAAGATGAAAACTTTGGAGAGGGCGTTGTATGGTAGCCCCAGTTGAAGCTCCTTGCCT
 
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JMFN028C17+           TCAATGT                                                     
JMFN011M20+           TCAATGTCGATCACAGACGCCCCCGACGCTGAAGAAGAAGAAGGAAGCTGTC        
JMFN043M23+           TCAATGTCGATCACAGACGCCCCCGACGCTGAAGAAGAAGAAGGAAGCTGTCTTGATGGG
JMFN037C13+           TCAATGTCGATCACAGACGCCCCCGACGCTGAAGAAGAAGAAGGAAGCTGTCTTGATGGG
JMFN011C07+           TCAATGTCGATCACAGACGCCCCCGACGCTGAAGAAGAAGAAGGAAGCTGTCTTGATGGG
                      ____________________________________________________________
consensus             TCAATGTCGATCACAGACGCCCCCGACGCTGAAGAAGAAGAAGGAAGCTGTCTTGATGGG
 
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JMFN043M23+           CTGGCAAAGGGGACGAAAGTTAAGGTGACGAAAAGGAGCAGAAGA               
JMFN037C13+           AAGGCAAAGGGGACGAAAGTTAAGGTGACGAAAAGGAGCAGAAGA               
JMFN011C07+           AAGGCAAAGGGGACGAAAGTTAAGGTGACGAAAAGGAGCAGAAGAGTAGCCTTCATTTTG
                      ____________________________________________________________
consensus             AAGGCAAAGGGGACGAAAGTTAAGGTGACGAAAAGGAGCAGAAGAGTAGCCTTCATTTTG