Contig 004704:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024L06Sequence757004704 (4)ref|XP_009794767.1|196PREDICTED: uncharacterized protein LOC104241517 [Nicotiana sylvestris]
JMFF032G10Sequence544004704 (4)ref|XP_009794767.1|196PREDICTED: uncharacterized protein LOC104241517 [Nicotiana sylvestris]578004704 (4)ref|XP_009627921.1|185PREDICTED: uncharacterized protein LOC104118395 [Nicotiana tomentosiformis]
JMFN009J06Sequence585004704 (4)ref|XP_009794767.1|153PREDICTED: uncharacterized protein LOC104241517 [Nicotiana sylvestris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF032G10-                                                  ATTCTCACATCAATAAAGCCA
rJMFF024L06+                                       TCGAGAACCGATTCTCACATCAATAAAGCCA
                      ____________________________________________________________
consensus                                          TCGAGAACCGATTCTCACATCAATAAAGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF032G10-           TCCACTAATTAAAAAATAAAAATAATAAAACAAGAGCCAAAGAGGATCCGATCGATCCAT
rJMFF024L06+          TCCACTAATTAAAAAATAAAAATAATAAAACAAGAGCCAAAGAGGATCCGATCGATCCAT
                      ____________________________________________________________
consensus             TCCACTAATTAAAAAATAAAAATAATAAAACAAGAGCCAAAGAGGATCCGATCGATCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF032G10-           GGCTGCGATGAGATTCTCTCTGGTTCTTTTGTTGGCTTGCATCATCATCTCCCTCCAAGG
rJMFF024L06+          GGCTGCGATGAGATTCTCTCTGGTTCTTTTGTTGGCTTGCATCATCATCTCCCTCCAAGG
                      ____________________________________________________________
consensus             GGCTGCGATGAGATTCTCTCTGGTTCTTTTGTTGGCTTGCATCATCATCTCCCTCCAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032G10+           GTTCTCGCCAATATTATCTGTGAAAAATTGCCGATAAATTTTTGTGCCTTTTCAATATC
JMFF032G10-           CGTTCTCGCCAATATTATCTGTGAAAAATTGCCGATAAATTTTTGTGCCTTTTCAATATC
rJMFF024L06+          CGTTCTCGCCAATATTATCTGTGAAAAATTGCCGATAAATTTTTGTGCCTTTTCAATATC
                      ____________________________________________________________
consensus             CGTTCTCGCCAATATTATCTGTGAAAAATTGCCGATAAATTTTTGTGCCTTTTCAATATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032G10+          ATCGTCCGGCCATAGATGTTTGTTAGAGAACTCAATAAGAGACGACGGGAAGGTGGAGTA
JMFF032G10-           ATCGTCCGGCCATAGATGTTTGTTAGAGAACTCAATAAGAGACGACGGGAAGGTGGAGTA
rJMFF024L06+          ATCGTCCGGCCATAGATGTTTGTTAGAGAACTCAATAAGAGACGACGGGAAGGTGGAGTA
JMFN009J06+                          ATGTTTGTTAGAGAACTCAATAAGAGACGACGGGAAGGTGGAGTA
                      ____________________________________________________________
consensus             ATCGTCCGGCCATAGATGTTTGTTAGAGAACTCAATAAGAGACGACGGGAAGGTGGAGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032G10+          CCAGTGTAAGACATCGGAGGTGGTGGTTGGGAGTTCCATGTCGGAGTACGTAGAGAGCGA
JMFF032G10-           CCAGTGTAAGACATCGGAGGTGGTGGTTGGGAGTTCCATGTCGGAGTACGTAGAGAGCGA
rJMFF024L06+          CCAGTGTAAGACATCGGAGGTGGTGGTTGGGAGTTCCATGTCGGAGTACGTAGAGAGCGA
JMFN009J06+           CCAGTGTAAGACATCGGAGGTGGTGGTTGGGAGTTCCATGTCGGAGTACGTAGAGAGCGA
                      ____________________________________________________________
consensus             CCAGTGTAAGACATCGGAGGTGGTGGTTGGGAGTTCCATGTCGGAGTACGTAGAGAGCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032G10+          TTCGTGCGTGAAAGCGTGCGGAGTTGATCGGAAAACGGTCGGAATGTCGTCGGATGCGTT
JMFF032G10-           TTCGTGCGTGAAAGCGTGCGGAGTTGATCGGAAAACGGTCGGAATGTCGTCGGATGCGTT
rJMFF024L06+          TTCGTGCGTGAAAGCGTGCGGAGTTGATCGGAAAACGGTCGGAATGTCGTCGGATGCGTT
JMFN009J06+           TTCGTGCGTGAAAGCGTGCGGAGTTGATCGGAAAACGGTCGGAATGTCGTCGGATGCGTT
                      ____________________________________________________________
consensus             TTCGTGCGTGAAAGCGTGCGGAGTTGATCGGAAAACGGTCGGAATGTCGTCGGATGCGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032G10+          GCTTGAGCCGACTTTCACCGCCCGGCTTTGTTCCACGGCGTGCTTCAATAATTGCCCTAA
JMFF032G10-           GCTTGAGCCGACTTTCACCGCCCGGCTTTGTTCCACGGCGTGCTTCAATAATTGCCCTAA
rJMFF024L06+          GCTTGAGCCGACTTTCACCGCCCGGCTTTGTTCCACGGCGTGCTTCAATAATTGCCCTAA
JMFN009J06+           GCTTGAGCCGACTTTCACCGCCCGGCTTTGTTCCACGGCGTGCTTCAATAATTGCCCTAA
                      ____________________________________________________________
consensus             GCTTGAGCCGACTTTCACCGCCCGGCTTTGTTCCACGGCGTGCTTCAATAATTGCCCTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032G10+          CATCATTGACCTATATTTCAACTTGGCTGCGGGTGAAGGGGTGTTTTTGCCTAATTTGTG
JMFF032G10-           CATCATTGACCTATATTTCAACTTGGCTGCGGGTGAAGGGGTGTTTTTGCCTAATTTGTG
rJMFF024L06+          CATCATTGACCTATATTTCAACTTGGCTGCGGGTGAAGGGGTGTTTTTGCCTAATTTGTG
JMFN009J06+           CATCATTGACCTATATTTCAACTTGGCTGCGGGTGAAGGGGTGTTTTTGCCTAATTTGTG
                      ____________________________________________________________
consensus             CATCATTGACCTATATTTCAACTTGGCTGCGGGTGAAGGGGTGTTTTTGCCTAATTTGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032G10+          CCAGGTGCAACAGACCAGCCCTCAACCGTCGTCGTGGCAATAGTTGATCGAGGTTCACAG
JMFF032G10-           CCAGGTGCAACAGACCAGCCCTCAACCGTCGTCGTGGCAATAG                 
rJMFF024L06+          CCAGGTGCAACAGACCAGCCCTCAACCGTCGTCGTGGCAATAGTTGATCGAGGTTCACAG
JMFN009J06+           CCAGGTGCAACAGACCAGCCCTCAACCGTCGTCGTGGCAATAGTTGATCGAGGTTCACAG
                      ____________________________________________________________
consensus             CCAGGTGCAACAGACCAGCCCTCAACCGTCGTCGTGGCAATAGTTGATCGAGGTTCACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032G10+          TTTTGAGTTTTGACAACGATCTCAACAGATATATACAGAAATATTGGTTATGTATGGTTT
rJMFF024L06+          TTTTGAGTTTTGACAACGATCTCAACAGATATATACAGAAATATTGGTTATGTATGGTTT
JMFN009J06+           TTTTGAGTTTTGACAACGATCTCAACAGATATATACAGAAATATTGGTTATGTATGGTTT
                      ____________________________________________________________
consensus             TTTTGAGTTTTGACAACGATCTCAACAGATATATACAGAAATATTGGTTATGTATGGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032G10+          TATATTAGCCTGGGAGGGGTGTGGATTTTTGGATTATTCTATAAGTTGTTGGTTGAGGTT
rJMFF024L06+          TATATTAGCCTGGGAGGGGTGTGGATTTTTGGATTATTCTATAAGTTGTTGGTTGAGGTT
JMFN009J06+           TATATTAGCCTGGGAGGGGTGTGGATTTTTGGATTATTCTATAAGTTGTTGGTTGAGGTT
                      ____________________________________________________________
consensus             TATATTAGCCTGGGAGGGGTGTGGATTTTTGGATTATTCTATAAGTTGTTGGTTGAGGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032G10+          TGAGATTTTTGCTCAAACAACAACATTCTTTTTGCCTTT                     
rJMFF024L06+          TGAGATTTTTGCTCAAACAACAACATTCTTTTTGCCTTTTCAAAAGAAAGCTCATGAAAT
JMFN009J06+           TGAGATTTTTGCTCAAACAACAACATTCTTTTTGCCTTTTCAAAAGAAAGCTCATGAAAT
                      ____________________________________________________________
consensus             TGAGATTTTTGCTCAAACAACAACATTCTTTTTGCCTTTTCAAAAGAAAGCTCATGAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF024L06+          AAGATG                                                      
JMFN009J06+           AAGATGGCTTATTGATTGCTTCXXXXXXXXXXXXXXXXXXXXXXCTCGAGACTAGTTCTC
                      ____________________________________________________________
consensus             AAGATGGCTTATTGATTGCTTCNNNNNNNNNNNNNNNNNNNNNNCTCGAGACTAGTTCTC