Contig 004699:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF037F13Sequence514010309 (36)ref|XP_009769682.1|5e-18PREDICTED: inactive rhomboid protein 1-like [Nicotiana sylvestris]761004699 (3)ref|XP_011081018.1|5e-75PREDICTED: inactive rhomboid protein 1-like [Sesamum indicum]
JMFN007F15Sequence525004699 (3)ref|XP_009769682.1|2e-89PREDICTED: inactive rhomboid protein 1-like [Nicotiana sylvestris]
JMFN019H16Sequence522004699 (3)ref|XP_011081018.1|1e-62PREDICTED: inactive rhomboid protein 1-like [Sesamum indicum]

Alignment

This contig is upended


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rJMFF037F13-                                                    TATATATATATAGTTTAA
                      ____________________________________________________________
consensus                                                       TATATATATATAGTTTAA
 
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JMFN019H16+                            AAAAAAGGATAGAAGATCAAAGGTTGGTATGAAAAGAATCTGA
rJMFF037F13-          TCTATGATACAAAACGAAAAAAAGAATAGAAGATCAAAGGTTGGTATGAAAAGAATCTGA
                      ____________________________________________________________
consensus             TCTATGATACAAAACGAAAAAAAGGATAGAAGATCAAAGGTTGGTATGAAAAGAATCTGA
 
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JMFN019H16+           TTTTGTGTTCAATATCAGTTATTATCGCGCTGCCATCTGGACGTGGGCACGCAGCTTAAA
rJMFF037F13-          TTTTGTGTTCAATATCAGTTATTATCGCACTGCCATCTCGACGTGGGCACACAGCTTAAA
                      ____________________________________________________________
consensus             TTTTGTGTTCAATATCAGTTATTATCGCGCTGCCATCTGGACGTGGGCACGCAGCTTAAA
 
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JMFN019H16+           TAGTGGCACCAACTGCAGCGATCATGTGCGTTCTCTCCTCTAAAGAGCATCGTCAACCCC
rJMFF037F13-          TAGTGGCACCAACTGCAACGATCATTTGCGTTCTCTCCTCTAAAGAGCATCGTCAACCCC
                      ____________________________________________________________
consensus             TAGTGGCACCAACTGCAGCGATCATTTGCGTTCTCTCCTCTAAAGAGCATCGTCAACCCC
 
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JMFN019H16+           ACCGCAAATCCAACGATCAATAAAATCAAGGCAGCCACCAAGAAAACGTATTGGAATATA
rJMFF037F13-          ACCGCAAATCCAACGATCAATAAAATCAAGGCAACCACCAAGAAAACGTATTGGAATATA
                      ____________________________________________________________
consensus             ACCGCAAATCCAACGATCAATAAAATCAAGGCAGCCACCAAGAAAACGTATTGGAATATA
 
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JMFN019H16+           GTGTGCTTGGACTTGTGTCGGCCTTCAGCCGGAAGATTTTGCCTTTCAAGCCAACCAAAC
rJMFF037F13-          GTGTGCTTGGACTTGTGTCGGCCTTCAGCCGGAAGATTTTGCCTTTCAAGCCAACCAAAC
                      ____________________________________________________________
consensus             GTGTGCTTGGACTTGTGTCGGCCTTCAGCCGGAAGATTTTGCCTTTCAAGCCAACCAAAC
 
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JMFN019H16+           TGGGGACGCAGTAGCAGCACAAAGCCGAGAAGAAACCCGCTAATGAAACCTCCAATATGG
rJMFF037F13-          TGGGGACGCAGTAGCAGCACAAAGCCGAGAAGAAACCCGCTAATGAAACCTCCAATATGG
                      ____________________________________________________________
consensus             TGGGGACGCAGTAGCAGCACAAAGCCGAGAAGAAACCCGCTAATGAAACCTCCAATATGG
 
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JMFN019H16+           GCAAAATTGTCAACGTGAGGAAGAATTCCAACAGCCAAGTTGATTGCAATGATAACGACG
rJMFF037F13-          GCAAAATTGTCAACGTGAGGAAGAATTCCAACAGCCAAGTTGATTGCAATGATAACGACG
                      ____________________________________________________________
consensus             GCAAAATTGTCAACGTGAGGAAGAATTCCAACAGCCAAGTTGATTGCAATGATAACGACG
 
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JMFN019H16+           AGAGTAAAAAGAGCGGCAGCCTTATTGGCATAAATTGTCCAGTTAGTAATCAGCTCCGAC
rJMFF037F13-          AGAGTAAAAAGAGCGGCAGCCTTATTGGCATAAATTGTCCAGTTAGTAATCAGCTCCGAC
                      ____________________________________________________________
consensus             AGAGTAAAAAGAGCGGCAGCCTTATTGGCATAAATTGTCCAGTTAGTAATCAGCTCCGAC
 
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JMFN019H16+           AGCATTGCTCCAAGAAGCCCAAAGACTGCACCAGAAGCTCCGACAGAAATGCTGTGTTG 
rJMFF037F13-          AGCATTGCTCCAAGAAGCCCAAAGACTGCACCAGAAGCTCCGACAGAAATGCTGTGTTGA
                      ____________________________________________________________
consensus             AGCATTGCTCCAAGAAGCCCAAAGACTGCACCAGAAGCTCCGACAGAAATGCTGTGTTGA
 
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rJMFF037F13-          ATGAATAGGGAAGACATAACACTCCCGCCTATTCCTGACAGCAGGTAGATTAGACCTACC
JMFN007F15+                                 TCCCGCCTATTCCTGACAGCAGGTAGATTAGACCTACC
                      ____________________________________________________________
consensus             ATGAATAGGGAAGACATAACACTCCCGCCTATTCCTGACAGCAGGTAGATTAGACCTACC
 
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rJMFF037F13-          CGCACAAATCCAAATTTGCTGCTCAAGGCGAATTCCAATAAAAATCAAGCTCAACATGTT
JMFN007F15+           CGCACAAATCCAAA-TTGCTGCTCAAGGCGAATTCCAATAAAAATCAAGCTCAACATGTT
                      ____________________________________________________________
consensus             CGCACAAATCCAAATTTGCTGCTCAAGGCGAATTCCAATAAAAATCAAGCTCAACATGTT
 
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rJMFF037F13-          AGCAAGCAAATGGACAACCCCGGCATGCAACCATATGCAAGTGAAAAGCCTCCATCCTTG
JMFN007F15+           AGCAAGCAAATGGACAACCCCGGCATGCAACCATATGCAAGTGAAAAGCCTCCATCCTTG
                      ____________________________________________________________
consensus             AGCAAGCAAATGGACAACCCCGGCATGCAACCATATGCAAGTGAAAAGCCTCCATCCTTG
 
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rJMFF037F13-          ATGATCATTCACTATCTTGTTCC                                     
JMFN007F15+           ATGATCATTCACTATCTTGTTCCATTCCAGTGCACCCAATTTTTCCAGTGTAGAAGAAGA
                      ____________________________________________________________
consensus             ATGATCATTCACTATCTTGTTCCATTCCAGTGCACCCAATTTTTCCAGTGTAGAAGAAGA
 
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JMFN007F15+           GGGCCCAAAAAGGGGATTTTCTCTTAGGGGTTGAAAAGAGAGCCTCCCGAGGAACCTTGC
                      ____________________________________________________________
consensus             GGGCCCAAAAAGGGGATTTTCTCTTAGGGGTTGAAAAGAGAGCCTCCCGAGGAACCTTGC
 
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JMFN007F15+           AACACACTCCCCATTCCTCCCAAACCTTCTCCTCTCATCATTGTTAGGGCAATTATTCAC
                      ____________________________________________________________
consensus             AACACACTCCCCATTCCTCCCAAACCTTCTCCTCTCATCATTGTTAGGGCAATTATTCAC
 
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JMFN007F15+           AAACATGATGACGATAAACATAGCAACGTTAGCCACCACAATCATGGGCACCAGCCAGGA
                      ____________________________________________________________
consensus             AAACATGATGACGATAAACATAGCAACGTTAGCCACCACAATCATGGGCACCAGCCAGGA
 
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JMFN007F15+           TGTCCACTGTTTCTCCGAGGTTTCCACATAGTACACTGATGATGATGGCGGTACTGCTGC
                      ____________________________________________________________
consensus             TGTCCACTGTTTCTCCGAGGTTTCCACATAGTACACTGATGATGATGGCGGTACTGCTGC
 
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JMFN007F15+           ATAGTTTCTTGGTGGGTATGCGCTATTTCTGCCCTTTGTTCCTCCCCCTCTCTCCAGATC
                      ____________________________________________________________
consensus             ATAGTTTCTTGGTGGGTATGCGCTATTTCTGCCCTTTGTTCCTCCCCCTCTCTCCAGATC