Contig 004698:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029I08+                                                       TTAGCTTTGCGGGAG
                      ____________________________________________________________
consensus                                                          TTAGCTTTGCGGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029I08+          AACATTTTGAGATGAATGGAAGTGATATTCGACCATGGTGGATAAAGCATCACTATTGTG
rJMSF011B11+                                                 GGATAAAGCATCACTATTGTG
                      ____________________________________________________________
consensus             AACATTTTGAGATGAATGGAAGTGATATTCGACCATGGTGGATAAAGCATCACTATTGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029I08+          CTATGGCTATGGCAC-TTATAAGTCTTACATGGGAAATACAAAGGGAACCAAACTGTGCC
rJMSF011B11+          CTATGGCTATGGCACTTTATAAGTCTTACATGGGAAATACAAAGGGAACCAAACTGTGCC
                      ____________________________________________________________
consensus             CTATGGCTATGGCACTTTATAAGTCTTACATGGGAAATACAAAGGGAACCAAACTGTGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029I08+          CAAAAACAGAGAGGAGTTCAACTTTTCCTGCAATGGGCAATTATGCAAGGTGTTGCAATG
rJMSF011B11+          CAAAAACAGAGAGGAGTTCAACTTTTCCTGCAATGGGCAATTATGCAAGGTGTTGCAATG
                      ____________________________________________________________
consensus             CAAAAACAGAGAGGAGTTCAACTTTTCCTGCAATGGGCAATTATGCAAGGTGTTGCAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029I08+          CTTCTTCAAAATAGATACCAACGGCAAAGATTGTATACACGTATTGCTCTGGGCAAGGCA
rJMSF011B11+          CTTCTTCAAAATAGATACCAACGGCAAAGATTGTATACACGTATTGCTCTGGGCAAGGCA
JMFN006G08-                                                         CTCTGGGCAAGGCA
                      ____________________________________________________________
consensus             CTTCTTCAAAATAGATACCAACGGCAAAGATTGTATACACGTATTGCTCTGGGCAAGGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029I08+          AGGAGAATGGATGTTGTTTGGGGGGAAACTGCTGGGGTCAAGGGTCAGTTGTTGCTGTTA
rJMSF011B11+          AGGAGAATGGATGTTGTTTGGGGGGAAACTGCTGGGGTCAAGGGTCAGTTGTTGCTGTTA
JMFN006G08-           AGGAGAATGGATGTTGTTTGGGGGGAAACTGCTGGGGTCAAGGGTCAGTTGTTGCTGTTA
                      ____________________________________________________________
consensus             AGGAGAATGGATGTTGTTTGGGGGGAAACTGCTGGGGTCAAGGGTCAGTTGTTGCTGTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029I08+          TTCCCTATACTATTCATTTTGCAGGGGTTTGAAGCATATATTGGGGTCTTATTGCTTAAA
rJMSF011B11+          TTCCCTATACTATTCATTTTGCAGGGGTTTGAAGCATATATTGGGGTCTTATTGCTTAAA
JMFN006G08-           TTCCCTATACTATTCATTTTGCAGGGGTTTGAAGCATATATTGGGGTCTTATTGCTTAAA
                      ____________________________________________________________
consensus             TTCCCTATACTATTCATTTTGCAGGGGTTTGAAGCATATATTGGGGTCTTATTGCTTAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029I08+          ACTGTTGCAATGGGCGATGTCTCTGAGTGGCAGGTTGTTACCTGTGGGGTCCTTCTAATA
rJMSF011B11+          ACTGTTGCAATGGGCGATGTCTCTGAGTGGCAGGTTGTTACCTGTGGGGTCCTTCTAATA
JMFN006G08-           ACTGTTGCAATGGGCGATGTCTCTGAGTGGCAGGTTGTTACCTGTGGGGTCCTTCTAATA
                      ____________________________________________________________
consensus             ACTGTTGCAATGGGCGATGTCTCTGAGTGGCAGGTTGTTACCTGTGGGGTCCTTCTAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029I08+          GCCATGGCAGTTGGGAACTTTATTAACACTGTGGAAACCCTTGTCACAAAATCTAGAGTT
rJMSF011B11+          GCCATGGCAGTTGGGAACTTTATTAACACTGTGGAAACCCTTGTCACAAAATCTAGAGTT
JMFN006G08-           GCCATGGCAGTTGGGAACTT--TTAACACTGTGGAAACCCTTGTCACAAAATCTAGAGTT
                      ____________________________________________________________
consensus             GCCATGGCAGTTGGGAACTTTATTAACACTGTGGAAACCCTTGTCACAAAATCTAGAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029I08+          AAAGCCAAGATGAAGAATAGCAAAAGCAAGCATGACTTGAATCCAGAGTCTGTAGCTAAG
rJMSF011B11+          AAAGCCAAGATGAAGAATAGCAAAAGCAAGCATGACTTGAATCCAGAGTCTGTAGCTAAG
JMFN006G08-           AAAGCCAAGATGAAGAATAGCAAAAGCAAGCATGACTTGAATCCAGAGTCTGTAGCTAAG
                      ____________________________________________________________
consensus             AAAGCCAAGATGAAGAATAGCAAAAGCAAGCATGACTTGAATCCAGAGTCTGTAGCTAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029I08+          GCTTTGTGATTTAGTTTTGGTCAGAAGATGTTGCTGCTACATTGCTCCATTCTCCAACCT
rJMSF011B11+          GCTTTGTGATTTAGTTTTGGTCAGAAGATGTTGCTGCTACATTGCTCCATTCTCCAACCT
JMFN006G08-           GCTTTGTGATTTAGTTTTGGTCAGAAGATGTTGCTGCTACATTGCTCCATTCTCCAACCT
                      ____________________________________________________________
consensus             GCTTTGTGATTTAGTTTTGGTCAGAAGATGTTGCTGCTACATTGCTCCATTCTCCAACCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029I08+          TGAGAAGAGCAGGCATCTGGTGATATCTTGCCACCCACTTGTGACTCCCAAGACAATGTT
rJMSF011B11+          TGAGAAGAGCAGGCATCTGGTGATATCTTGCCACCCACTTGTGACTCCCAAGACAATGTT
JMFN006G08-           TGAGAAGAGCAGGCATCTGGTGATATCTTGCCACCCACTTGTGACTCCCAAGACAATGTT
                      ____________________________________________________________
consensus             TGAGAAGAGCAGGCATCTGGTGATATCTTGCCACCCACTTGTGACTCCCAAGACAATGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029I08+          TTCTTTCTATAGTTGTATAAACATCAAAATCCATGCTGGATTAATCTTAGCCACTAGAAT
rJMSF011B11+          TTCTTTCTATAGTTGTATAAACATCAAAATCCATGCTGGATTAATCTTAGCCACTAGAAT
JMFN006G08-           TTCTTTCTATAGTTGTATAAACATCAAAATCCATGCTGGATTAATCTTAGCCACTAGAAT
                      ____________________________________________________________
consensus             TTCTTTCTATAGTTGTATAAACATCAAAATCCATGCTGGATTAATCTTAGCCACTAGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029I08+          CTTTCTTCACCATGGGATATATGTCCAAATTATGAGAATTT                   
rJMSF011B11+          CTTTCTTCA-CATGGGATATATGTCCAAATTATGAGAATTT                   
JMFN006G08-           CTTTCTTCA-CATGGGATATATGTCCAAATTATGAGAATTTTGGTAATTGTTATTTGTTC
                      ____________________________________________________________
consensus             CTTTCTTCA-CATGGGATATATGTCCAAATTATGAGAATTTTGGTAATTGTTATTTGTTC