Contig 004692:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFN046G12+                                           CAGGCTAAATTTGTAGGGGAGTGGCCTA
                      ____________________________________________________________
consensus                                             CAGGCTAAATTTGTAGGGGAGTGGCCTA
 
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JMFN046G12+           TTGCGTCTTTGCAGAGTTGGTACTTGGTATCCACTCCTATTTGTGGAGGAGTAGCTTATT
                      ____________________________________________________________
consensus             TTGCGTCTTTGCAGAGTTGGTACTTGGTATCCACTCCTATTTGTGGAGGAGTAGCTTATT
 
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JMFN046G12+           CAATTCACTACTTCACTTGCACGCTTATATATAGAAGATACATGTTTAGAGACTTCAATT
JMFN017M11+                                                        TTAGAGACTTCAACT
rJMSF010B05-                         CTTGCACGCTTATATATACAAGATACATG-TTAGAGACTTCAACT
                      ____________________________________________________________
consensus             CAATTCACTACTTCACTTGCACGCTTATATATAGAAGATACATGTTTAGAGACTTCAACT
 
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JMFN046G12+           TCAACTCAAATACAAGCTGTAAAAAAAAATAAATTTCATATTTATGGGATCAACGAAGAA
JMFN017M11+           TCAACTCAAATACAAACTGTAAAAAAAAAGAAATTTCATATTTATGGGATCAACG---AA
rJMSF010B05-          TCAACTCAAATACAAACTGTAAAAAAAAAGAAATTTCATATTTATGGGATCAACG---AA
                      ____________________________________________________________
consensus             TCAACTCAAATACAAACTGTAAAAAAAAAGAAATTTCATATTTATGGGATCAACG---AA
 
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JMFN046G12+           GATGTCCCCGAGATTGTTGGTGCGCAGCTCCGCGTTGTGTGCTGAACTACAAGTTTCAGC
JMFN017M11+           GATGTCCCCGGGATTGTTGGTGCGCAGCTTCGCGTTGTGTGATGAACTACAAGTTTCAGC
rJMSF010B05-          GATGTCCCCGGGATTGTTGGTGCGCAGCTTCGCGTTGTGTGATGAACTACAAGTTTCAGC
                      ____________________________________________________________
consensus             GATGTCCCCGGGATTGTTGGTGCGCAGCTTCGCGTTGTGTGATGAACTACAAGTTTCAGC
 
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JMFN046G12+           CTCCCGACGATGTGCCGCATCCTCAAGGTAAGCTTTTTAAAGTTATCTTCTTCGATTGAA
JMFN017M11+           CTCCCGTCGATGTGCCGCATCCTCAAGGTAAGCTTTTTTCAGTTATCTTCTTCGATTGAA
rJMSF010B05-          CTCCCGTCGATGTGCCGCATCCTCAAGGTAAGCTTTTTTCAGTTATCTTCTTCGATTGAA
JMFN004J20+                                                         CTTCTTCGATTGAA
                      ____________________________________________________________
consensus             CTCCCGTCGATGTGCCGCATCCTCAAGGTAAGCTTTTTTCAGTTATCTTCTTCGATTGAA
 
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JMFN046G12+           TCATCTTTTGCCAATTTTTGGGAACGGATCTGATGGACTTTTGAGTTTCTGGAATAGATT
JMFN017M11+           TCATCTTTTGCCAATTTTTGGAAACGGATCTGATGGACTTTTGAGTTTCTGGAATAGATT
rJMSF010B05-          TCATCTTTTGCCAATTTTTGGAAACGGATCTGATGGACTTTTGAGTTTCTGGAATAGATT
JMFN004J20+           TCATCTTTTGCCAATTTTTGGGAACGGATCTGATGGACTTTTGAGTTTCTGGAATAGATT
                      ____________________________________________________________
consensus             TCATCTTTTGCCAATTTTTGGAAACGGATCTGATGGACTTTTGAGTTTCTGGAATAGATT
 
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JMFN046G12+           ATTCACCGGAAGGATA-CCCAAGGATGCTTATCTTCAACCGTTTACCCGCCCCAAGGTTA
JMFN017M11+           ATTCACCGGAAGGATATCCCAAGGATGCTTATCTTCAACCTTTTACCCGCCCCAAGGTTA
rJMSF010B05-          ATTCACCGGAAGGATATCCCAAGGATGCTTATCTTCAACCTTTTACCCGCCCCAAGGTTA
JMFN004J20+           ATTCACCGGAAGGATA-CCCAAGGATGCTTATCTTCAACCGTTTACCCGCCCCAAGGTTA
                      ____________________________________________________________
consensus             ATTCACCGGAAGGATATCCCAAGGATGCTTATCTTCAACCTTTTACCCGCCCCAAGGTTA
 
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JMFN046G12+           CCCTCCTCCCTCCACAG                                           
JMFN017M11+           CCCTCCTACCTCCACAG                                           
rJMSF010B05-          CCCTCCTACCTCCACAG                                           
JMFN004J20+           CCCTCCTCCCTCCACAGTACCCTCCTCCCTCCACAGTACGCAACCCCGCCACTTCAGCAA
                      ____________________________________________________________
consensus             CCCTCCTACCTCCACAGTACCCTCCTCCCTCCACAGTACGCAACCCCGCCACTTCAGCAA
 
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JMFN004J20+           TCTGCAGGTAGCTCAGGCTGCTTGGAAGGATGGTAAACTTTTCTCAATCCTCTTATTTTT
                      ____________________________________________________________
consensus             TCTGCAGGTAGCTCAGGCTGCTTGGAAGGATGGTAAACTTTTCTCAATCCTCTTATTTTT
 
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JMFN004J20+           TTGGTTTGCAATACTCATCTTCTTTACTTTCCATTTGTGTACTATATCTGGACCAATTTG
                      ____________________________________________________________
consensus             TTGGTTTGCAATACTCATCTTCTTTACTTTCCATTTGTGTACTATATCTGGACCAATTTG
 
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JMFN004J20+           GCTTCCTATGTATCTTCTTTTTTTGGTCTGTGACTCTGTGTATTGAGAGAGTGTAAATGC
                      ____________________________________________________________
consensus             GCTTCCTATGTATCTTCTTTTTTTGGTCTGTGACTCTGTGTATTGAGAGAGTGTAAATGC
 
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JMFN004J20+           AGCACTCTCCTGTACACCTTTGATTTTGCGTAAGATTCGTAATTTCCAGCATTCACGATC
                      ____________________________________________________________
consensus             AGCACTCTCCTGTACACCTTTGATTTTGCGTAAGATTCGTAATTTCCAGCATTCACGATC
 
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JMFN004J20+           TACGATTTCTTGGTTCAAAATCAGTTACCAGGACCGGATCTTGATTTTGGCAAGAGGGTG
                      ____________________________________________________________
consensus             TACGATTTCTTGGTTCAAAATCAGTTACCAGGACCGGATCTTGATTTTGGCAAGAGGGTG
 
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JMFN004J20+           TGAAGTTTGTAGATTGAGATGGAGGAAGCAGAGAGATACAAGGACAGACACAAGAAATTA
                      ____________________________________________________________
consensus             TGAAGTTTGTAGATTGAGATGGAGGAAGCAGAGAGATACAAGGACAGACACAAGAAATTA
 
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JMFN004J20+           GGGTAAGAAGAAATGGTCTTTGGGTGTGAATTTTCTAGATTGAGATGGAGAGAGTAGAGA
                      ____________________________________________________________
consensus             GGGTAAGAAGAAATGGTCTTTGGGTGTGAATTTTCTAGATTGAGATGGAGAGAGTAGAGA