| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009B24 | Sequence | 529 | 009065 (8) | 779 | 004689 (5) | gb|AFY06670.1| | 306 | homeobox-leucine zipper protein ATHB-15-like protein [Nicotiana tabacum] | |||
| JMFF019I16 | Sequence | 528 | 009065 (8) | 766 | 004689 (5) | gb|AFY06670.1| | 363 | homeobox-leucine zipper protein ATHB-15-like protein [Nicotiana tabacum] | |||
| JMFF035O15 | Sequence | 669 | 004689 (5) | ref|XP_002515977.1| | 4e-96 | DNA binding protein, putative [Ricinus communis] gb|EEF46397.1| DNA binding prot | |||||
| JMFN003O17 | Sequence | 545 | 004689 (5) | gb|KDP40871.1| | 6e-51 | hypothetical protein JCGZ_24870 [Jatropha curcas] | |||||
| JMSF046M19 | Sequence | 705 | 009065 (8) | 760 | 004689 (5) | ref|XP_002515977.1| | 1e-104 | DNA binding protein, putative [Ricinus communis] gb|EEF46397.1| DNA binding prot | |||
This contig is upended
. : . : . : . : . : . :
rJMFF019I16+ GAGAGCGTTGCT
rJMSF046M19+ TCACATGCANGAGAGCGTTGCT
rJMFF009B24+ TCACATGCAGGAGAGCGTTGCT
____________________________________________________________
consensus TCACATGCAGGAGAGCGTTGCT
. : . : . : . : . : . :
rJMFF019I16+ GCGATGGCTCGTCAATATGTGCGAAGCATTATCTCGTCTGTTCAGAGGGTAGCGTTAGCG
rJMSF046M19+ GCGATGGCTCGTCAATATGTGCGAAGCATTATTTCGTCTGTTCAGAGGGTAGCGTTAGCG
rJMFF009B24+ GCGATGGCTCGTCAATATGTGCGAAGCATTATCTCGTCTGTTCAGAGGGTAGCGTTAGCG
____________________________________________________________
consensus GCGATGGCTCGTCAATATGTGCGAAGCATTATCTCGTCTGTTCAGAGGGTAGCGTTAGCG
. : . : . : . : . : . :
rJMFF019I16+ CTTTCTCCTTCTCACTTGGGTT-CCCATGGTGGACTGCGACTTCCCCTGGGGACTCCTGA
rJMSF046M19+ CNTTCTCCTTCTCACTNGGGTT-CCCATGGTGGACTGCGACTTCCCCTGGGGACTCCTGA
rJMFF009B24+ CTTTCTCCTTCTCACTTGGGTTCCCCATGGTGGACTGCGACTTCCCCTGGGGACTCCTGA
rJMFF035O15+ GTGGACTGCGACTTCCCCTGGGGACTCCTGA
____________________________________________________________
consensus CTTTCTCCTTCTCACTTGGGTT-CCCATGGTGGACTGCGACTTCCCCTGGGGACTCCTGA
. : . : . : . : . : . :
rJMFF019I16+ AGCGCATATTATTGCTCGCTGGATTTGCCAAAGTTACAGGTGTTATTTGGGCGTCGAGCT
rJMSF046M19+ AGCGCATATTATTGCTCGCTGGATTTGCCAAAGTTACAGGTGTTATTTGGGCGTCGAGCT
rJMFF009B24+ AGCGCATATTATTGCTCGCTGGATTTGCCAAAGTTACAGGTGTTATTTGGGCGTCGAGCT
rJMFF035O15+ AGCGCATATTATTGCTCGCTGGATTTGCCAAAGTTACAGGTGTTATTTGGGCGTCGAGCT
____________________________________________________________
consensus AGCGCATATTATTGCTCGCTGGATTTGCCAAAGTTACAGGTGTTATTTGGGCGTCGAGCT
. : . : . : . : . : . :
rJMFF019I16+ ACTTAAATCCACCGGTGAAGGAAACGAATCGATTCTGAAAACTCTATGGAACCACTCGGA
rJMSF046M19+ ACTTAAATCCACCGGTGAAGGAAACGAATCGATTCTGAAAACTCTATGGAACCACTCGGA
rJMFF009B24+ ACTTAAATCCACCGGTGAAGGAAACGAATCGATTCTGAAAACTCTATGGAACCACTCGGA
rJMFF035O15+ ACTTAAATCCACCGGTGAAGGAAACGAATCGATTCTGAAAACTCTATGGAACCACTCGGA
____________________________________________________________
consensus ACTTAAATCCACCGGTGAAGGAAACGAATCGATTCTGAAAACTCTATGGAACCACTCGGA
. : . : . : . : . : . :
rJMFF019I16+ TGCTATTGTTTGCTGCTCTGCAAAGGCACTGCCAGTTTTCACGTTTGCAAACCAGGCTGG
rJMSF046M19+ TGCTATTGTTTGCTGCTCTGCAAAGGCACTGCCAGTTTTCACGTTTGCAAACCAGGCTGG
rJMFF009B24+ TGCTATTGTTTGCTGCTCTGCAAAGGCACTGCCAGTTTTCACGTTTGCAAACCAGGCTGG
rJMFF035O15+ TGCTATTGTTTGCTGCTCTGCAAAGGCACTGCCAGTTTTCACGTTTGCAAACCAGGCTGG
JMFN003O17- GG
____________________________________________________________
consensus TGCTATTGTTTGCTGCTCTGCAAAGGCACTGCCAGTTTTCACGTTTGCAAACCAGGCTGG
. : . : . : . : . : . :
rJMFF019I16+ TCTCGACATGCTCGAAACAACGTTGGTTGCACTTCAAGATATTACTTTGGAGAAGATATT
rJMSF046M19+ TCTCGACATGCTCGAAACAACGTTGGTTGCACTTCAAGATATTACTTTGGAGAAGATATT
rJMFF009B24+ TCTCGACATGCTCGAAACAACGTTGGTTGCACTTCAAGATATTACTTTGGAGAAGATATT
rJMFF035O15+ TCTCGACATGCTCGAAACAACGTTGGTTGCACTTCAAGATATTACTTTGGAGAAGATATT
JMFN003O17- TCTCGACATGCTCGAAACAACGTTGGTTGCACTTCAAGATATTACTTTGGAGAAGATATT
____________________________________________________________
consensus TCTCGACATGCTCGAAACAACGTTGGTTGCACTTCAAGATATTACTTTGGAGAAGATATT
. : . : . : . : . : . :
rJMFF019I16+ TGATGATCACGGGAGAAAAAGTCTCTGCTCCGAGTTCCCACAGATAATGCAACAGGGATT
rJMSF046M19+ TGATGATCACGGGAGAAAAAGTCTCTGCTCCGAGTTCCCACAGATAATGCAACAGGGATT
rJMFF009B24+ TGATGATCACGGGAGAAAAAGTCTCTGCTCCGAGTTCCCACAGATAATGCAACAGGGATT
rJMFF035O15+ TGATGATCACGGGAGAAAAAGTCTCTGCTCCGAGTTCCCACAGATAATGCAACAGGGATT
JMFN003O17- TGATGATCACGGGAGAAAAAGTCTCTGCTCCGAGTTCCCACAGATAATGCAACAGGGATT
____________________________________________________________
consensus TGATGATCACGGGAGAAAAAGTCTCTGCTCCGAGTTCCCACAGATAATGCAACAGGGATT
. : . : . : . : . : . :
rJMFF019I16+ TGCCTGTCTCCAAGGCGGGATCTGCATGTCGAGCATGGGCAGGCCAGTTTCGTACGAGAG
rJMSF046M19+ TGCCTGTCTCCAAGGCGGGATCTGCATGTCGAGCATGGGCAGGCCAGTTTCGTACGAGAG
rJMFF009B24+ TGCCTGTCTCCAAGGCGGGATCTGCATGTCGAGCATGGGCAGGCCAGTTTCGTACGAGAG
rJMFF035O15+ TGCCTGTCTCCAAGGCGGGATCTGCATGTCGAGCATGGGCAGGCCAGTTTCGTACGAGAG
JMFN003O17- TGCCTGTCTCCAAGGCGGGATCTGCATGTCGAGCATGGGCAGGCCAGTTTCGTACGAGAG
____________________________________________________________
consensus TGCCTGTCTCCAAGGCGGGATCTGCATGTCGAGCATGGGCAGGCCAGTTTCGTACGAGAG
. : . : . : . : . : . :
rJMFF019I16+ AGCAGTGGCGTGGAAGGTTCTGAATGAAGAAGAAAGCGCGCATTGCATCTGCTTTATGTT
rJMSF046M19+ AGCAGTGGCGTGGAAGGTTCTGAATGAAGAAGAAAGCGCGCATTGCATCTGCTTTATGTT
rJMFF009B24+ AGCAGTGGCGTGGAAGGTTCTGAATGAAGAAGAAAGCGCGCATTGCATCTGCTTTATGTT
rJMFF035O15+ AGCAGTGGCGTGGAAGGTTCTGAATGAAGAAGAAAGCGCGCATTGCATCTGCTTTATGTT
JMFN003O17- AGCAGTGGCGTGGAAGGTTCTGAATGAAGAAGAAAGCGCGCATTGCATCTGCTTTATGTT
____________________________________________________________
consensus AGCAGTGGCGTGGAAGGTTCTGAATGAAGAAGAAAGCGCGCATTGCATCTGCTTTATGTT
. : . : . : . : . : . :
rJMFF019I16+ CATAAACTGGTCTTTCGTCTAATAAGTTTGTTAGTGTTGTTACCCGGGGATCTATTATCT
rJMSF046M19+ CATAAACTGGTCTTTCGTCTAATAAGTTTGTTAGTGTTGTTACCCGGGGATCTATTATCT
rJMFF009B24+ CATAAACTGGTCTTTCGTCTAATAAGTTTGTTAGTGTTGTTACCCGGGGATCTATTATCT
rJMFF035O15+ CATAAACTGGTCTTTCGTCTAATAAGTTTGTTAGTGTTGTTACCCGGGGATCTATTATCT
JMFN003O17- CATAAACTGGTCTTTCGTCTAATAAGTTTGTTAGTGTTGTTACCCGGGGATCTATTATCT
____________________________________________________________
consensus CATAAACTGGTCTTTCGTCTAATAAGTTTGTTAGTGTTGTTACCCGGGGATCTATTATCT
. : . : . : . : . : . :
rJMFF019I16+ GTACGAATATTACCCTGACTTAAGAACCTCTAATGGCTTCGCCATCCGATCCTCGTCTTT
rJMSF046M19+ GTACGAATATTACCCTGACTTAAGAACCTCTAATGGCTTCGCCATCCGATCCTCGTCTTT
rJMFF009B24+ GTACGAATATTACCCTGACTTAAGAACCTCTAATGGCTTCGCCATCCGATCCTCGTCTTT
rJMFF035O15+ GTACGAATATTACCCTGACTTAAGAACCTCTAATGGCTTCGCCATCCGATCCTCGTCTTT
JMFN003O17- GTACGAATATTACCCTGACTTAAGAACCTCTAATGGCTTCGCCATCCGATCCTCGTCTTT
____________________________________________________________
consensus GTACGAATATTACCCTGACTTAAGAACCTCTAATGGCTTCGCCATCCGATCCTCGTCTTT
. : . : . : . : . : . :
rJMFF019I16+ TGTGTAAGTTTGTAACCCAGGAATCATCAGGATACAACAGGACAAGAACCTCTTGAACCA
rJMSF046M19+ TGTGTAAGTTTGTAACCCAGGAATCATCAGGATACAACAGGACAAGAACCTCTTGAACCA
rJMFF009B24+ TGTGTAAGTTTGTAACCCAGGAATCATCAGGATACAACAGGACAAGAACCTCTTGAACCA
rJMFF035O15+ TGTGTAAGTTTGTAACCCAGGAATCATCAGGATACAACAGGACAAGAACCTCTTGAACCA
JMFN003O17- TGTGTAAGTTTGTAACCCAGGAATCATCAGGATACAACAGGACAAGAACCTCTTGAACCA
____________________________________________________________
consensus TGTGTAAGTTTGTAACCCAGGAATCATCAGGATACAACAGGACAAGAACCTCTTGAACCA
. : . : . : . : . : . :
rJMFF019I16+ CCTTTTGTTTGCTCTCTGGTGCATGCATGCATGCA
rJMSF046M19+ CCTTTTGTTTGCTCTCTGG
rJMFF009B24+ CCTTTTGTTTGCTCTCTGGTGCATGCATGCATGCA
rJMFF035O15+ CCTTTTGTTTGCTCTCTGGTGCATGCATGCATGCA
JMFN003O17- CCTTTTGTTTGCTCTCTGGTGCATGCATGCATGCATGAATGTTAGTATGAACTATCTGTT
____________________________________________________________
consensus CCTTTTGTTTGCTCTCTGGTGCATGCATGCATGCATGAATGTTAGTATGAACTATCTGTT
. : . : . : . : . : . :
JMFN003O17- TGAGAACCTTTGTTACATCTTCTTTTGCTAGTAATTGTTCAAGTTCTGCATTTGGTATCT
____________________________________________________________
consensus TGAGAACCTTTGTTACATCTTCTTTTGCTAGTAATTGTTCAAGTTCTGCATTTGGTATCT