Contig 004687:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005B08Sequence391004687 (5)649004687 (5)emb|CDP15409.1|6e-34unnamed protein product [Coffea canephora]
JMFF005B19Sequence523004687 (5)emb|CDP15409.1|2e-34unnamed protein product [Coffea canephora]
JMFF051O17Sequence636004687 (5)emb|CDP15409.1|1e-34unnamed protein product [Coffea canephora]
JMFN033B08Sequence181004687 (5)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF005B08-                                                              ATTTTGAT
                      ____________________________________________________________
consensus                                                                 ATTTTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF005B08-          CTGATCTCTTGATTGGTATCTGACATGGAAGTACACTGCAGATTATTGTGATCAAACAAT
                      ____________________________________________________________
consensus             CTGATCTCTTGATTGGTATCTGACATGGAAGTACACTGCAGATTATTGTGATCAAACAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF005B19-                                                 AGCTATAAGGGTACATACGTA
rJMFF005B08-          TGAGGAAAAAATATCCAGAAACTAACGATGGATCGCATAAGCTATAAGGGTACATACGTA
                      ____________________________________________________________
consensus             TGAGGAAAAAATATCCAGAAACTAACGATGGATCGCATAAGCTATAAGGGTACATACGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF005B19-          GTGGGGAACTCGATCGATCATGTGATGACTTAGGTTTTCGAGGAATTTAAGGAAATTAAA
rJMFF005B08-          GTGGGGAACTCGATCGATCATGTGATGACTTAGGTTTTCGAGGAATTTAAGGAAATTAAA
JMFF051O17+                                  GATGACTTAGGTTTTCGAGGATTTAAGGGAAATTAAA
                      ____________________________________________________________
consensus             GTGGGGAACTCGATCGATCATGTGATGACTTAGGTTTTCGAGGAATTTAAGGAAATTAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF005B19-          GGATGGATCAGCATTCAGCAACTGTTCTCGATCCTTAATCTGCTGGAAGTAGCCCTTCTT
rJMFF005B08-          GGATGGATCAGCATTCAGCAACTGTTCTCGATCCTTAATCTGCTGGAAGTAGCCCTTCTT
JMFF051O17+           GGATGGATCAGCATTCAGCAACTGTTCTCGATCCTTAATCTGCTGGAAGTAGCCCTTCTT
                      ____________________________________________________________
consensus             GGATGGATCAGCATTCAGCAACTGTTCTCGATCCTTAATCTGCTGGAAGTAGCCCTTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF005B19-          CCTTCCGCCATTAAAGCTTCACGAGCTGACATTATATTGCTATTCATCAAAGAAGCATCG
rJMFF005B08-          CCTTCCGCCATTAAAGCTTCACGAGCTGACATTATATTGCTATTCATCAAAGAAGCATCG
JMFF051O17+           CCTTCCGCCATTAAAGCTTCACGAGCTGACATTATATTGCTATTCATCAAAGAGGCATCG
                      ____________________________________________________________
consensus             CCTTCCGCCATTAAAGCTTCACGAGCTGACATTATATTGCTATTCATCAAAGAAGCATCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF005B19-          AAACCGCGGCAATCGGTCCATTCCTTGAGGAGATCCTCTTGGCCCCAGATATCCGGGATC
rJMFF005B08-          AAACCGCGGCAATCGGTCCATTCCTTGAGGAGATCCTCTTGGCCCCAGATATCCGGGATC
JMFF051O17+           AAACCGCGGCAATCGGTCCATTCCTTGAGGAGATCCTCTTGGCCCCAGATATCCGGGATC
                      ____________________________________________________________
consensus             AAACCGCGGCAATCGGTCCATTCCTTGAGGAGATCCTCTTGGCCCCAGATATCCGGGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF005B19-          CAAACACGCCCTGCAACTTCCACCCGGTGCCTCTTTAGCCTCTCCCGCCCCGTGATCTCC
rJMFF005B08-          CAAACACGCCCTGCAACTTCCACCCGGTGCCTCTTTAGCCTCTCCCGCCCCGTGATCTCC
JMFF005B08+                                      TGCCTCTTTAGCCTCTCCCGCCCCGTGATCTCC
JMFF051O17+           CAAACACGCCCTGCAACTTCCACCCGGTGCCTCTTTAGCCTCTCCCGCCCCGTGATCTCC
                      ____________________________________________________________
consensus             CAAACACGCCCTGCAACTTCCACCCGGTGCCTCTTTAGCCTCTCCCGCCCCGTGATCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF005B19-          GCCGCCGCCGCCGCGGCGTCGCCCGGGCTGCACCCTTGAACCCCAGTTTCTCCTCCGCCG
rJMFF005B08-          GCCGCCGCCGCCGCGGCGTCGCCCGGGCTGCACCCTTGAACCCCAGTTTCTCCTCCGCCG
JMFF005B08+           GCCGCCGCCGCCGCGGCGTCGCCCGGGCTGCACCCTTGAACCCCAGTTTCTCCTCCGCCG
JMFF051O17+           GCCGCCGCCGCCGCGGCGTCGCCCGGGCTGCACCCTTGAACCCCAGTTTCTCCTCCGCCG
                      ____________________________________________________________
consensus             GCCGCCGCCGCCGCGGCGTCGCCCGGGCTGCACCCTTGAACCCCAGTTTCTCCTCCGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF005B19-          TTGGGTTCACCATGACGACCTTTCTCCTCTGATGAACAGCTTTTCTGCGGTTTCTTCTGC
rJMFF005B08-          TTGGGTTCACCATGACGACCTTTCTCCTCTGATGAACAGCTTTTCTGCGGTTTCTTCTGC
JMFF005B08+           TTGGGTTCACCATGACGACCTTTCTCCTCTGATGAACAGCTTTTCTGCGGTTTCTTCTGC
JMFF051O17+           TTGGGTTCACCATGACGACCTTTCTCCTCTGATGAACAGCTTTTCTGCGGTTTCTTCTGC
                      ____________________________________________________________
consensus             TTGGGTTCACCATGACGACCTTTCTCCTCTGATGAACAGCTTTTCTGCGGTTTCTTCTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF005B19-          TCTGGGGCTTCGCTTTTTTTTACCCCCCAAACACGCCCGCCGTCTGGAACCCATATCCGA
rJMFF005B08-          TCTGGGGCTTCGCTTTTTTTTACCCCCCAAACACGCCCGCCGTCTGGAACCCATATCCGA
JMFN033B08+                                                 GCCGTCTGGAACCCATATCCGA
JMFF005B08+           TCTGGGGCTTCGCTTTTTTTTACCCCCCAAACACGCCCGCCGTCTGGAACCCATATCCGA
JMFF051O17+           TCTGGGGCTTCGC-TTTTTTTACCCCCCAAACACGCCCGCCGTCTGGAACCCATATCCGA
                      ____________________________________________________________
consensus             TCTGGGGCTTCGCTTTTTTTTACCCCCCAAACACGCCCGCCGTCTGGAACCCATATCCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF005B19-          CTCTTCCGCGTTGCTGTCGGAC                                      
rJMFF005B08-          CTCTTCCGCGTTGCTGTCGGACTCNCCGGCGTTCTTGAATT                   
JMFN033B08+           CTCTTCCGCGTTGCTGTCGGACTCGCCGGCGTTCTTGAATTCCCGGCGGCGGGATGTTGT
JMFF005B08+           CTCTTCCGCGTTGCTGTCGGACTCGCCGGCGTTCTTGAATTCCCGGCGGCGGGATGTTGT
JMFF051O17+           CTCTTCCGCGTTGCTGTCGGACTCGCCGGCGTTCTTGAATTCCCGGCGGCGGGATGTTGT
                      ____________________________________________________________
consensus             CTCTTCCGCGTTGCTGTCGGACTCGCCGGCGTTCTTGAATTCCCGGCGGCGGGATGTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN033B08+           GTTGGCGGTGGGATGATGATGCTGCATGGATGAGAGATGTGTGTTCGTTGTATAGAGAGA
JMFF005B08+           GTTGGCGGTGGGATGATGATGCTGCATGGATGAGAGATGTGTGTTCGTTGTATAGAGAGA
JMFF051O17+           GTTGGCGGTGGGATGATGATGCTGCATGGATGAGAGATGTGTGTTCGTTGTATAGAGAGA
                      ____________________________________________________________
consensus             GTTGGCGGTGGGATGATGATGCTGCATGGATGAGAGATGTGTGTTCGTTGTATAGAGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN033B08+           GAGAGAGAGAGAGAGGGTTTGGGTTTGGGTTTGAGAGAA                     
JMFF005B08+           GAGAGAGAGAGAGAGGGTTTGGGTTTGGGTTTGAGAGAAGATTTTCAATTTTTCATG   
JMFF051O17+           GAGAGAGAGAGAGAGGGTTTGGGTTTGGGTTTGAGAGAAGATTTTCAATTTTTCATGAGT
                      ____________________________________________________________
consensus             GAGAGAGAGAGAGAGGGTTTGGGTTTGGGTTTGAGAGAAGATTTTCAATTTTTCATGAGT