Contig 004674:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027P23Sequence561004674 (3)emb|CAC19789.1|1e-18MYB-like DNA-binding protein [Catharanthus roseus]751005565 (3)dbj|BAF38405.1|2e-71telomere binding protein [Nicotiana tabacum]
JMFF050I07Sequence617004674 (3)emb|CAC19789.1|9e-20MYB-like DNA-binding protein [Catharanthus roseus]608005565 (3)ref|XP_009785792.1|6e-52PREDICTED: telomere repeat-binding protein 3-like isoform X1 [Nicotiana sylvest
JMSF037J03Sequence683004674 (3)emb|CAC19789.1|6e-21MYB-like DNA-binding protein [Catharanthus roseus]728005565 (3)dbj|BAF38405.1|7e-72telomere binding protein [Nicotiana tabacum]

Alignment

This contig is upended


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JMSF037J03+             TACAGTGCGATCGTTAGCTACAGTTAAGTCTTCTTCTATATGCGTTTCAATTTCAATC
                      ____________________________________________________________
consensus               TACAGTGCGATCGTTAGCTACAGTTAAGTCTTCTTCTATATGCGTTTCAATTTCAATC
 
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JMSF037J03+           CCGAGTTTGCCATTGCCATTAAACACCTTCGAAGTCTGTTCCTGGAGCGAACAATCTTTG
JMFF050I07+                                                      GGAGCGAACAATCTTTG
                      ____________________________________________________________
consensus             CCGAGTTTGCCATTGCCATTAAACACCTTCGAAGTCTGTTCCTGGAGCGAACAATCTTTG
 
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JMSF037J03+           GGATACAAAGATCCACCAAAACCATTATCCTCGATTTTCTGCACTTCAATAACGGGATCA
JMFF027P23+                                                  TGCACTTCAATAACGGGATCA
JMFF050I07+           GGATACAAAGATCCACCAAAACCATTATCCTCGATNTTCTGCACTTCAATAACGGGATCA
                      ____________________________________________________________
consensus             GGATACAAAGATCCACCAAAACCATTATCCTCGATTTTCTGCACTTCAATAACGGGATCA
 
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JMSF037J03+           GATACCGAGCTTCCCTGATCAGATTTCACATATTTCCCTGAAGCTTCAATCTTTTCTTGC
JMFF027P23+           GATACCGAGCTTCCCTGATCAGATTTCACATATTTCCCTGAAGCTTCAATCTTTTCTTGC
JMFF050I07+           GATACCGAGCTTCCCTGATCAGATTTCACATATTTCCCTGAAGCTTCAATCTTTTCTTGC
                      ____________________________________________________________
consensus             GATACCGAGCTTCCCTGATCAGATTTCACATATTTCCCTGAAGCTTCAATCTTTTCTTGC
 
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JMSF037J03+           TTAACAATACCTTTCTCCTCATCTGCAGCAATATTACTAGAAGCAGAGCTTTCACTCTCC
JMFF027P23+           TTAACAATACCTTTCTCNTCATCTGCAGCAATATTACTAGAAGCAGAGCTTTCACTCTCN
JMFF050I07+           TTAACAATACCTTTCTCCTCATCTGCAGCAATATTACTAGAAGCAGAGCTTTCACTCTCC
                      ____________________________________________________________
consensus             TTAACAATACCTTTCTCCTCATCTGCAGCAATATTACTAGAAGCAGAGCTTTCACTCTCC
 
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JMSF037J03+           TGCAAAAGCTTCCCAGCCACAGTGGCCAACAATTCAAATGCACAAATTTGATTATCCTCC
JMFF027P23+           TGCAAAAGCTTCCCAGCCACAGTGGCCAACAATTCAAATGCACAAATTTGATTATCCTCC
JMFF050I07+           TGCAAAAGCTTCCCAGCCACAGTGGCCAACAATTCAAATGCACAAATTTGATTATCCTCC
                      ____________________________________________________________
consensus             TGCAAAAGCTTCCCAGCCACAGTGGCCAACAATTCAAATGCACAAATTTGATTATCCTCC
 
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JMSF037J03+           AAACTTTTGAGGGGGTGTCTCCTTCGAACTGATCTGGGACCTCTAGGCACACAGGGAATC
JMFF027P23+           AAACTTTTGAGGGGGTGTCTCCTTCGAACTGATCTGGGACCTCTAGGCACACAGGGAATC
JMFF050I07+           AAACTTTTGAGGGGGTGTCTCCTTCGAACTGATCTGGGACCTCTAGGCACACAGGGAATC
                      ____________________________________________________________
consensus             AAACTTTTGAGGGGGTGTCTCCTTCGAACTGATCTGGGACCTCTAGGCACACAGGGAATC
 
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JMSF037J03+           TGAAACCCACCAAAACCATACTCCAATCTCTTCTTCAGCACCATCTCTTAACCAGCATAC
JMFF027P23+           TGAAACCCACCAAAACCATACTCCAATCTCTTCTTCAGCACCATCTCTTAACCAGCATAC
JMFF050I07+           TGAAACCCACCAAAACCATACTCCAATCTCTTCTTCAGCACCATCTCTTAACCAGCATAC
                      ____________________________________________________________
consensus             TGAAACCCACCAAAACCATACTCCAATCTCTTCTTCAGCACCATCTCTTAACCAGCATAC
 
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JMSF037J03+           CAAGAACAGATAACTATGTGCAGTGAAATTATGGTAATTTGATCTGAGGTGAAGAAAAAC
JMFF027P23+           CAAGAACAGATAACTATGTGCAGTGAAATTATGGTAATTTGATCTGAGGTGAAGAAAAAC
JMFF050I07+           CAAGAACAGATAACTATGTGCAGTGAAATTATGGTAATTTGATCTGAGGTGAAGAAAAAC
                      ____________________________________________________________
consensus             CAAGAACAGATAACTATGTGCAGTGAAATTATGGTAATTTGATCTGAGGTGAAGAAAAAC
 
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JMSF037J03+           TGTACAGATTCAGTGTGGTAAGAATGAAAGAATGAACATTTTTGTATACATAATTTGATC
JMFF027P23+           TGTACAGATTCAGTGTGGTAAGAATGAAAGAATGAACATTTTTGTATACATAATTTGATC
JMFF050I07+           TGTACAGATTCAGTGTGGTAAGAATGAAAGAATGAACATTTTTGTATACATAATTTGATC
                      ____________________________________________________________
consensus             TGTACAGATTCAGTGTGGTAAGAATGAAAGAATGAACATTTTTGTATACATAATTTGATC
 
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JMSF037J03+           CAAGTGAAGAAGTTGTGGACAGGATTTGAAAACCTCCGAGCTTGGGTGAAAAACACACAA
JMFF027P23+           CAAGTGAAGAAGTTGTGGACAGGATTTGAAAACCTCCGAGCTTGGGTGAAAAACACACAA
JMFF050I07+           CAAGTGAAGAAGTTGTGGACAGGATTTGAAAACCTCCGAGCTTGGGTGAAAAACACACAA
                      ____________________________________________________________
consensus             CAAGTGAAGAAGTTGTGGACAGGATTTGAAAACCTCCGAGCTTGGGTGAAAAACACACAA
 
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JMSF037J03+           CCAAACAGTGCTTAAACCCCTTTC                                    
JMFF027P23+           CCAAACAGTGCTTAAACCCCTTTCTCTCTCTCTCTCTCTCTCTCCCTCTATCTCTGATGC
JMFF050I07+           CCAAACAGTGCTTAAACCCCTTTCTCTCTCTCTCTCTCTCTCTCCCTCTATCTCTGATGC
                      ____________________________________________________________
consensus             CCAAACAGTGCTTAAACCCCTTTCTCTCTCTCTCTCTCTCTCTCCCTCTATCTCTGATGC