Contig 004673:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF050E19Sequence596004673 (5)ref|XP_011084423.1|2e-23PREDICTED: cleavage and polyadenylation specificity factor subunit 2 [Sesamum i555007000 (4)emb|CDP05185.1|3e-45unnamed protein product [Coffea canephora]
JMFS066A07Sequence629004673 (5)gb|EYU19553.1|8e-37hypothetical protein MIMGU_mgv1a0019021mg, partial [Erythranthe guttata]
JMSF001O09Sequence206004673 (5)719007000 (4)emb|CDP05185.1|3e-97unnamed protein product [Coffea canephora]
JMSF029M15Sequence689004673 (5)gb|EYU19553.1|9e-42hypothetical protein MIMGU_mgv1a0019021mg, partial [Erythranthe guttata]735007000 (4)emb|CDP05185.1|1e-91unnamed protein product [Coffea canephora]
JMSF030F21Sequence634004673 (5)gb|EYU19553.1|1e-31hypothetical protein MIMGU_mgv1a0019021mg, partial [Erythranthe guttata]651007000 (4)emb|CDP05185.1|6e-99unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF029M15+                                 GNTATTCCAAAGTGTTTCATGGCATAGGNCAGGNCACC
                      ____________________________________________________________
consensus                                   GNTATTCCAAAGTGTTTCATGGCATAGGNCAGGNCACC
 
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JMFS066A07+           AAGGTGAAGGGTATCTGGATACGAGAGCAGCACGGCATCCACTGTTGATGCTACCCTGGA
JMSF029M15+           AAGGTGAAGGGTATCTGGATACGAGAGCAGCACGGCATCCACTGTTGATGCTACCCTGGA
JMSF030F21+                              TACGAGAGCAGCACGGCATCCACTGTTGATGCTACCCTGGA
                      ____________________________________________________________
consensus             AAGGTGAAGGGTATCTGGATACGAGAGCAGCACGGCATCCACTGTTGATGCTACCCTGGA
 
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JMFS066A07+           CAGGGGTTGGAGAAGAGAGGTATCAAAGTGGTCATTCCAACCACAGTCAATAAGGAAGTT
JMSF029M15+           CAGGGGTTGGAGAAGAGAGGTATCAAAGTGGTCATTCCAACCACAGTCAATAAGGAAGTT
JMSF030F21+           CAGGGGTTGGAGAAGAGAGGTATCAAAGTGGTCATTCCAACCACAGTCAATAAGGAAGTT
JMFF050E19+                  TGGAGAAGAGAGGTATCAAAGTGGTCATTCCAACCACAGTCAATAAGGAAGTT
                      ____________________________________________________________
consensus             CAGGGGTTGGAGAAGAGAGGTATCAAAGTGGTCATTCCAACCACAGTCAATAAGGAAGTT
 
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JMFS066A07+           AAAGCCATCAACGGAGACAAGGTAGGAGAGAGGGTTTTCGTTATACACTCCACACAATGG
JMSF029M15+           AAAGCCATCAACGGAGACAAGGTAGGAGAGAGGGTTTTCGTTATACACTCCACACAATGG
JMSF030F21+           AAAGCCATCAACGGAGACAAGGTAGGAGAGAGGGTTTTCGTTATACACTCCACACAATGG
JMFF050E19+           AAAGCCATCAACGGAGACAAGGTAGGAGAGAGGGTTTTCGTTATACACTCCACACAATGG
                      ____________________________________________________________
consensus             AAAGCCATCAACGGAGACAAGGTAGGAGAGAGGGTTTTCGTTATACACTCCACACAATGG
 
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JMFS066A07+           CTTCACCTGCACTGAAGTTCCCATGGCAGTGATTCTCTTTGCTTTCAACTGAGCTTTGCA
JMSF029M15+           CTTCACCTGCACTGAAGTTCCCATGGCAGTGATTCTCTTTGCTTTCAACTGAGCTTTGCA
JMSF030F21+           CTTCACCTGCACTGAAGTTCCCATGGCAGTGATTCTCTTTGCTTTCAACTGAGCTTTGCA
JMFF050E19+           CTTCACCTGCACTGAAGTTCCCATGGCAGTGATTCTCTTTGCTTTCAACTGAGCTTTGCA
                      ____________________________________________________________
consensus             CTTCACCTGCACTGAAGTTCCCATGGCAGTGATTCTCTTTGCTTTCAACTGAGCTTTGCA
 
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JMFS066A07+           GTTGTGAGGGAGAAGGCTTTCCGTCTTTCCGGCGTTTGTTGGGCAAAGAAGCTTTGCGAT
JMSF029M15+           GTTGTGAGGGAGAAGGCTTTCCGTCTTTCCGGCGTTTGTTGGGCAAAGAAGCTTTGCGAT
JMSF030F21+           GTTGTGAGGGAGAAGGCTTTCCGTCTTTCCGGCGTTTGTTGGGCAAAGAAGCTTTGCGAT
JMFF050E19+           GTTGTGAGGGAGAAGGCTTTCCGTCTTTCCGGCGTTTGTTGGGCAAAGAAGCTTTGCGAT
                      ____________________________________________________________
consensus             GTTGTGAGGGAGAAGGCTTTCCGTCTTTCCGGCGTTTGTTGGGCAAAGAAGCTTTGCGAT
 
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JMFS066A07+           GCAAAATGGTGGAGCAGTTACCTTACTGGCTGTGGGCCAACCAGGCACCCGGCGAGGCTG
JMSF029M15+           GCAAAATGGTGGAGC-------TTACTGGCTGTGGGCCAACCAGGCACCCGGCGAGGCTG
JMSF030F21+           GCAAAATGGTGGAGC-------TTACTGGCTGTGGGCCAACCAGGCACCCGGCGAGGCTG
JMFF050E19+           GCAAAATGGTGGAGC-------TTACTGGCTGTGGGCCAACCAGGCACCCGGCGAGGCTG
                      ____________________________________________________________
consensus             GCAAAATGGTGGAGC-------TTACTGGCTGTGGGCCAACCAGGCACCCGGCGAGGCTG
 
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JMFS066A07+           AGGTTAGGTCGTTCGCCAGAGATGGTGAGGGAGACAGGGAGAGGAGCGAGGGCGTTGGCT
JMSF029M15+           AGGTTAGGTCGTTCGCCAGAGATGGTGAGGGAGACAGGGAGAGGAGCGAGGGCGTTGGCT
JMSF030F21+           AGGTTAGGTCGTTCGCCAGAGATGGTGAGGGAGACAGGGAGAGGAGCGAGGGCGTTGGCT
JMFF050E19+           AGGTTAGGTCGTTCGCCAGAGATGGTGAGGGAGACAGGGAGAGGAGCGAGGGCGTTGGCT
                      ____________________________________________________________
consensus             AGGTTAGGTCGTTCGCCAGAGATGGTGAGGGAGACAGGGAGAGGAGCGAGGGCGTTGGCT
 
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JMFS066A07+           TCGGAGGATGGAGAAGCAGAAACCGGAGGACTAAGAAGTGAGAGTAGGGCCAGATGGTGT
JMSF029M15+           TCGGAGGATGGAGAAGCAGAAACCGGAGGACTAAGAAGTGAGAGTAGGGCCAGATGGTGT
JMSF030F21+           TCGGAGGATGGAGAAGCAGAAACCGGAGGACTAAGAAGTGAGAGTAGGGCCAGATGGTGT
JMSF001O09+                                           AAGAAGTGAGAGTAGGNCCAGATGGTGT
JMFF050E19+           TCGGAGGATGGAGAAGCAGAAACCGGAGGACTAAGAAGTGAGAGTAGGGCCAGATGGTGT
                      ____________________________________________________________
consensus             TCGGAGGATGGAGAAGCAGAAACCGGAGGACTAAGAAGTGAGAGTAGGGCCAGATGGTGT
 
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JMFS066A07+           GCCGGCGTAACTGCTTGACAGGAGTGTCGACGAGGGTGGTGGCCGGAGGGCGGAGGCGGC
JMSF029M15+           GCCGGCGTAACTGCTTGACAGGAGTGTCGACGAGGGTGGTGGCCGGAGGGCGGAGGCGGC
JMSF030F21+           GCCGGCGTAACTGCTTGACAGGAGTGTCGACGAGGGTGGTGGCCGGAGGGCGGAGGCGGC
JMSF001O09+           GCCGGCGTAACTGCTTGACAGGAGTGTCGACGAGGGTGGTGGCCGGAGGGCGGAGGCGGC
JMFF050E19+           GCCGGCGTAACTGCTTGACAGGAGTGTCGACGAGGGTGGTGGCCGGAGGGCGGAGGCGGC
                      ____________________________________________________________
consensus             GCCGGCGTAACTGCTTGACAGGAGTGTCGACGAGGGTGGTGGCCGGAGGGCGGAGGCGGC
 
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JMFS066A07+           GAGACGCAGAGGACAGTGGAGAACTGTGAAAGTGAGCCAATGAGGACTGAGGAGTGGAGA
JMSF029M15+           GAGACGCAGAGGACAGTGGAGAACTGTGAAAGTGAGCCAATGAGGACTGAGGAGTGGAGA
JMSF030F21+           GAGACGCAGAGGACAGTGGAGAACTGTGAAAGTGAGCCAATGAGGACTGAGGAGTGGAGA
JMSF001O09+           GAGACGCAGAGGACAGTGGAGAACTGTGAAAGTGAGCCAATGAGGACTGAGGAGTGGAGA
JMFF050E19+           GAGACGCAGAGGACAGTGGAGAACTGTGAAAGTGAGCCAATGAGGACTGAGGAGTGGAGA
                      ____________________________________________________________
consensus             GAGACGCAGAGGACAGTGGAGAACTGTGAAAGTGAGCCAATGAGGACTGAGGAGTGGAGA
 
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JMFS066A07+           AGGCGAGAAACAGAGAAGCAGATCTGAAT                               
JMSF029M15+           AGGCGAGAAACAGAGAAGCAGATCTGAATAAGGGATTAGAGTTGAAAAGGCACGCTCC  
JMSF030F21+           AGGCGAGAAACAGAGAAGCAGATCTGAATAAGGGATTAGAGTTGAAAAGGCACGCTCC  
JMSF001O09+           AGGCGAGAAACAGAGAAGCAGATCTGAATAAGGGATTAGAGTTGAAAAGGCACGCTCC  
JMFF050E19+           AGGCGAGAAACAGAGAAGCAGATCTGAATAAGGGATTAGAGTTGAAAAGGCACGCTCCTC
                      ____________________________________________________________
consensus             AGGCGAGAAACAGAGAAGCAGATCTGAATAAGGGATTAGAGTTGAAAAGGCACGCTCCTC