Contig 004665:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF048L12Sequence462004665 (3)ref|XP_002311226.2|2e-16hypothetical protein POPTR_0008s06900g [Populus trichocarpa] gb|EEE88593.2| hypo260018080
JMFS013F01Sequence456004665 (3)ref|XP_006338840.1|113PREDICTED: uncharacterized protein LOC102599854 [Solanum tuberosum]
JMFS075G02Sequence560004665 (3)ref|XP_011047390.1|134PREDICTED: uncharacterized protein LOC105141721 [Populus euphratica]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS013F01+            TGTTCATAAAAGATTAAATTCACCGGCTGCCGGCTTTGGTTGGCGTGCGACCGCTTTAT
JMFS075G02+                                    GGCTGCCGTCTCTGGTTCGCCTGCGACCGCTTGAT
                      ____________________________________________________________
consensus              TGTTCATAAAAGATTAAATTCACCGGCTGCCGTCTTTGGTTGGCGTGCGACCGCTTTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS013F01+           GACGTCCATGAGTGAGTTTGAATCCGACGGTTCATATTCTCCGGCCCGGTTGGCGGACAT
JMFS075G02+           GGCCGCCATGAGCGAGTTCGAAACCGCCGGTTCATCTTCTCCGGCCCGGTTCGACGACGA
                      ____________________________________________________________
consensus             GGCGTCCATGAGTGAGTTTGAATCCGCCGGTTCATCTTCTCCGGCCCGGTTGGCGGACGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS013F01+           CGGCAGCCGGTCCAGCGTCACCCCGAGACAGAGCTCCAACACCTTGATATGTAGGCGCGT
JMFS075G02+           CGGCAGCCGGTCCAGCGTCACCCCGAGGCAGAGCTCCAACGCCTTGAACTGTAGGCGCGT
JMFF048L12+                            TCACCCCGAGGCAGAGCTCCAACGCCTTGAACTGTAGGCGCGT
                      ____________________________________________________________
consensus             CGGCAGCCGGTCCAGCGTCACCCCGAGGCAGAGCTCCAACGCCTTGAACTGTAGGCGCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS013F01+           AGAGTACGCATTGTTGGGCGCCCGGCATCAGCCTTCTCACAGCACGTAGGTTGACGTCAG
JMFS075G02+           AGAGTACGCATTGTTGCGCGCCCGGCAACACGCCTCCCGCAGCGCCGACGACGACGGCAG
JMFF048L12+           AGAGTACGCATTGTTGCGCGCCCGGCAACACGCCTCCCGCAGCGCCGACGACGACGGCAG
                      ____________________________________________________________
consensus             AGAGTACGCATTGTTGCGCGCCCGGCAACACGCCTCCCGCAGCGCCGACGACGACGGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS013F01+           GTAGAGCATGCTCTACACCATGTGATCGTAGGTGGTGTGAGCATGGCCACGCCGCGGGGC
JMFS075G02+           CGAGAGCAGCGACGACACCATGTGAACCGACGTCGTCTGAGCATGCCCACGCCGCCGCGC
JMFF048L12+           CGAGAGCAGCGACGACACCATGTGAACCGACGTCGTCTGAGCATGCCCACGCCGCCGCGC
                      ____________________________________________________________
consensus             CGAGAGCAGCGACGACACCATGTGAACCGACGTCGTCTGAGCATGCCCACGCCGCCGCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS013F01+           CACCGCCGCGGCCTCGTCCAGCGCCCTCTCCGCGTCGGCGGTCAAGCATTGCCGGGCTGT
JMFS075G02+           CGCCGCCACCGCCTCGTCCAGCGCCCTCACCGCCTCCGCCGTCAAGCATTGCCGGGCTGT
JMFF048L12+           CGCCGCCACCGCCTCGTCCAGCGCCCTCACCGCCTCCGCCGTCAAGCATTGCCGGGCTGT
                      ____________________________________________________________
consensus             CGCCGCCACCGCCTCGTCCAGCGCCCTCACCGCCTCCGCCGTCAAGCATTGCCGGGCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS013F01+           CGCCACCGGCGTCGGCATTTCCGCCGGAAAAACAAAAAATTGTTCCTAATAATATAAAGA
JMFS075G02+           CGCCACCGGCGTCGGCATCTCCGCCGGAAAAACAAGAAATTGTTCCTAATAATATAAAGA
JMFF048L12+           CGCCACCGGCGTCGGCATCTCCGCCGGAAAAACAAGAAATTGTTCCTAATAATATAAAGA
                      ____________________________________________________________
consensus             CGCCACCGGCGTCGGCATCTCCGCCGGAAAAACAAGAAATTGTTCCTAATAATATAAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS013F01+           TTCGACCCTTTAACATCAAATTCCGATAC                               
JMFS075G02+           TTC-ACCCTTTAACATCAAATTCCAATACACACAACAACAGAAACAAAAAAACAATGAAA
JMFF048L12+           TTC-ACCCTTTAACATCAAATTCCAATACACACAACAACAGAAACAAAAAAACAATGAAA
                      ____________________________________________________________
consensus             TTC-ACCCTTTAACATCAAATTCCAATACACACAACAACAGAAACAAAAAAACAATGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS075G02+           CCACTCCAGTATCACTAATCTACGGTTTCAAGATTCAAGAATGATTAGAAATGACAGCAG
JMFF048L12+           CCACTCCAGTATCACTAATCTACGGTTTCAAGATTCAAGAATGATTAGAAATGACAGCAG
                      ____________________________________________________________
consensus             CCACTCCAGTATCACTAATCTACGGTTTCAAGATTCAAGAATGATTAGAAATGACAGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS075G02+           TGTAGTATGAGGAGCAGAAGAAACTCGAAAGAATTATTAATATTAT              
JMFF048L12+           TGTAGTATGAGGAGCAGAAGAAACTCGAAAGAATTATTAATATTATTATTAAGTGGGAAT
                      ____________________________________________________________
consensus             TGTAGTATGAGGAGCAGAAGAAACTCGAAAGAATTATTAATATTATTATTAAGTGGGAAT