Contig 004663:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF048H19Sequence390004663 (3)ref|XP_011095003.1|1e-08PREDICTED: LOW QUALITY PROTEIN: ATP-dependent Clp protease ATP-binding subunit 326005558 (2)
JMFF050A18Sequence595004663 (3)ref|XP_009781367.1|3e-33PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondr646005558 (2)gb|AFK34447.1|2e-27unknown [Medicago truncatula]
JMFS060H12Sequence630004663 (3)ref|XP_006356538.1|2e-32PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondr

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS060H12+ AGACGGCGGTGAAGAGCCG
                      ____________________________________________________________
consensus AGACGGCGGTGAAGAGCCG
 
. : . : . : . : . : . :
JMFS060H12+ GCCGGGGGCCAATTCTCGGGAGGCTCACCGCTATACGACTTCAAGGTCCCCCAGAAAGAT
JMFF050A18+ TCAAGGTCCCCCAGAAAGAT
                      ____________________________________________________________
consensus GCCGGGGGCCAATTCTCGGGAGGCTCACCGCTATACGACTTCAAGGTCCCCCAGAAAGAT
 
. : . : . : . : . : . :
JMFS060H12+ GACCTGATCGGCTTTCCGTATTGTTCCACCTTATTACCGGAATTCTTTCCACTGCCCAAT
JMFF050A18+ GACCTGATCGGCTTCCGTNATTGTTCCACCTTATANCAGGAATTCTTTCCACTGCCCAAT
                      ____________________________________________________________
consensus GACCTGATCGGCTTTCGTTATTGTTCCACCTTATTACCGGAATTCTTTCCACTGCCCAAT
 
. : . : . : . : . : . :
JMFS060H12+ TTCTTGGCCCTCTCAATCTCGAAGAAGGTTCCTTGAAGAGGCGCCATGGTGTAGGCGGTC
JMFF050A18+ TTCTTGGCCCTCTCAATCTCGAAGAAGGTTCCTTGAAGAGGCGCCATGGTGTAGGCGGTC
                      ____________________________________________________________
consensus TTCTTGGCCCTCTCAATCTCGAAGAAGGTTCCTTGAAGAGGCGCCATGGTGTAGGCGGTC
 
. : . : . : . : . : . :
JMFS060H12+ TTACACTTGGGGCAGAGATTAGAACCTCCAATTTTCGAGTCAGCGCCGTCGTTATTAGCG
JMFF050A18+ TTACACTTGGGGCAGAGATTAGAACCTCCAATTTTCGAGTCAGCGCCGTCGTTATTAGCG
                      ____________________________________________________________
consensus TTACACTTGGGGCAGAGATTAGAACCTCCAATTTTCGAGTCAGCGCCGTCGTTATTAGCG
 
. : . : . : . : . : . :
JMFS060H12+ AGAGAGTTAGTGCGGTTGGTGAAGATGAGATCCGTGTGATTAGAGCAACGAGGGCAATCG
JMFF050A18+ AGAGAGTTAGTGCGGTTGGTGAAGATGAGATCCGTGTGATTAGAGCAACGAGGGCAATCG
                      ____________________________________________________________
consensus AGAGAGTTAGTGCGGTTGGTGAAGATGAGATCCGTGTGATTAGAGCAACGAGGGCAATCG
 
. : . : . : . : . : . :
JMFS060H12+ GCCTCCGCCCTAATCCGGCGGATGGGCTCGGAGGAAGAGCCGGCGCCGCCCCACTTGTAC
JMFF050A18+ GCCTCCGCCCTAATCCGGCGGATGGGCTCGGAGGAAGAGCCGGCGCCGCCCCACTTGTAC
JMFF048H19+ GAGGAAGAGCCGGCGCCGCCCCACTTGTAC
                      ____________________________________________________________
consensus GCCTCCGCCCTAATCCGGCGGATGGGCTCGGAGGAAGAGCCGGCGCCGCCCCACTTGTAC
 
. : . : . : . : . : . :
JMFS060H12+ CTCTCCTGCACCCCAACAATCGACTCCCGCCGCTTAACACGGTGGAGACAGTTCAAGAAC
JMFF050A18+ CTCTCCTGCACCCCAACAATCGACTCCCGCCGCTTAACACGGTGGAGACAGTTCAAGAAC
JMFF048H19+ CTCTCGTGCACCCCAACAATCGACTCCCGCCGCTTAACACGGTGGAGACAGTTCAAGAAC
                      ____________________________________________________________
consensus CTCTCCTGCACCCCAACAATCGACTCCCGCCGCTTAACACGGTGGAGACAGTTCAAGAAC
 
. : . : . : . : . : . :
JMFS060H12+ CCCCTCTTCTGGTCCTGACAACAGTGGTTGTTCGACGTAGAAGTCATTCTCGTCGCCGTG
JMFF050A18+ CCCCTCTTCTGGTCCTGACAACAGTGGTTGTTCGACGTAGAAGTCATTCTCGTCGCCGTG
JMFF048H19+ CCCCTCTTCTGGTCCTGACAACAGTGGTTGTTCGACGTAGAAGTCATTCTCGTCGCCGTG
                      ____________________________________________________________
consensus CCCCTCTTCTGGTCCTGACAACAGTGGTTGTTCGACGTAGAAGTCATTCTCGTCGCCGTG
 
. : . : . : . : . : . :
JMFS060H12+ GCCGCCGTTTTTCTACCGGAAACAACCGTTAGAACCGCCGTGTCTCGTAGTCTGCTCCAC
JMFF050A18+ GCCGCCGTTTTTCTACCGGAAACAACCGTTAGAACCGCCGTGTCTCGTAGTCTGCTCCAC
JMFF048H19+ GCCGCCGTTTTTCTACCGGAAACAACCGTTAGAACCGCCGTGTCTCGTAGTCTGCTCCAC
                      ____________________________________________________________
consensus GCCGCCGTTTTTCTACCGGAAACAACCGTTAGAACCGCCGTGTCTCGTAGTCTGCTCCAC
 
. : . : . : . : . : . :
JMFS060H12+ CTCCATATCCCGGACATCCTCCGCGCCTGCGATTTCAGTATCAATCCTAAAGAATGGGAA
JMFF050A18+ CTCCATATCCCGGACATCCTCCGCGCCTGCGATTTCAGTATCAATCCTAAAGAATGGGAA
JMFF048H19+ CTCCATATCCCGGACATCCTCCGCGCCTGCGATTTCAGTATCAATCCTAAAGAATGGGAA
                      ____________________________________________________________
consensus CTCCATATCCCGGACATCCTCCGCGCCTGCGATTTCAGTATCAATCCTAAAGAATGGGAA
 
. : . : . : . : . : . :
JMFS060H12+ TTCCTTCTCGA
JMFF050A18+ TTCCTTCTCGATATCGTAAACTTTTCTTGCCTCGC
JMFF048H19+ TTCCTTCTCGATATCGTAAACTTTTCTTGCCTCGCAGACAGACAGACAGGAATTTTGATA
                      ____________________________________________________________
consensus TTCCTTCTCGATATCGTAAACTTTTCTTGCCTCGCAGACAGACAGACAGGAATTTTGATA
 
. : . : . : . : . : . :
JMFF048H19+ ACGTAAATGGATATTGGGATCTGTAACAAGGATTAAATTATTAATATTTTAGTGGATAAC
                      ____________________________________________________________
consensus ACGTAAATGGATATTGGGATCTGTAACAAGGATTAAATTATTAATATTTTAGTGGATAAC