Contig 004658:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032O18Sequence570004658 (3)gb|ACJ84811.1|4e-102unknown [Medicago truncatula]813008362 (3)ref|XP_009765027.1|5e-144PREDICTED: 26S protease regulatory subunit S10B homolog B [Nicotiana sylvestris
JMFF032O21Sequence598004658 (3)gb|ACJ84811.1|3e-98unknown [Medicago truncatula]725008362 (3)gb|KJB59782.1|7e-108hypothetical protein B456_009G271600 [Gossypium raimondii] gb|KJB59783.1| hypoth
JMFF046O06Sequence541004658 (3)gb|ACJ84811.1|1e-81unknown [Medicago truncatula]505008362 (3)gb|AFK35582.1|5e-44unknown [Medicago truncatula]

Alignment

This contig is upended


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JMFF032O18+                                                   AATGCCAACTCTGAGGAACA
JMFF032O21+                                                                  GAACA
                      ____________________________________________________________
consensus                                                     AATGCCAACTCTGAGGAACA
 
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JMFF032O18+           GTTCGGGATTCATTAGTGGTAGTTCTATAGATTCTCTGAGTTCTCTTATCTGATCTGATA
JMFF032O21+           GTTCGGGATTCATTAGTGGTAGTTCTATAGATTCTCTGAGTTCTCTTATCTGATCTGATA
JMFF046O06+                                                                      A
                      ____________________________________________________________
consensus             GTTCGGGATTCATTAGTGGTAGTTCTATAGATTCTCTGAGTTCTCTTATCTGATCTGATA
 
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JMFF032O18+           ATCCTCCCACAGCAGCATAGCTCACATTTCCAGGATCTTCATGAAGCATATTGTATACTA
JMFF032O21+           ATCCTCCCACAGCAGCATAGCTCACATTTCCAGGATCTTCATGAAGCATATTGTATACTA
JMFF046O06+           ATCCTCCCACAGCAGCATAGCTCACATTTCCAGGATCTTCATGAAGCATATTGTATACTA
                      ____________________________________________________________
consensus             ATCCTCCCACAGCAGCATAGCTCACATTTCCAGGATCTTCATGAAGCATATTGTATACTA
 
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JMFF032O18+           CTGGATCAACTTCACGGGGGAGTGCCCGCATAATTGTGAGAGTTGTCATGTCAAGAACTA
JMFF032O21+           CTGGATCAACTTCACGGGGGAGTGCCCGCATAATTGTGAGAGTTGTCATGTCAAGAACTA
JMFF046O06+           CTGGATCAACTTCACGGGGGAGTGCCCGCATAATTGTGAGAGTTGTCATGTCAAGAACTA
                      ____________________________________________________________
consensus             CTGGATCAACTTCACGGGGGAGTGCCCGCATAATTGTGAGAGTTGTCATGTCAAGAACTA
 
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JMFF032O18+           CTCTAGTGCCTGAAGTCAGTTTTTCCTTGTCTACTTTATTGCGACAACCAACCACATATC
JMFF032O21+           CTCTAGTGCCTGAAGTCAGTTTTTCCTTGTCTACTTTATTGCGACAACCAACCACATATC
JMFF046O06+           CTCTAGTGCCTGAAGTCAGTTTTTCCTTGTCTACTTTATTGCGACAACCAACCACATATC
                      ____________________________________________________________
consensus             CTCTAGTGCCTGAAGTCAGTTTTTCCTTGTCTACTTTATTGCGACAACCAACCACATATC
 
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JMFF032O18+           TTGGACCACTGCTGGCTTTGACAATCAATCTTTCATTGTCTAGAGGTCTGAGCACCTCGC
JMFF032O21+           TTGGACCACTGCTGGCTTTGACAATCAATCTTTCATTGTCTAGAGGTCTGAGCACCTCGC
JMFF046O06+           TTGGACCACTGCTGGCTTTGACAATCAATCTTTCATTGTCTAGAGGTCTGAGCACCTCGC
                      ____________________________________________________________
consensus             TTGGACCACTGCTGGCTTTGACAATCAATCTTTCATTGTCTAGAGGTCTGAGCACCTCGC
 
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JMFF032O18+           CTATGATCTGGCCAACACTCTGAAGAGACTTCAAATCATCTTCTGTTTTATTAAATTCCT
JMFF032O21+           CTATGATCTGGCCAACACTCTGAAGAGACTTCAAATCATCTTCTGTTTTATTAAATTCCT
JMFF046O06+           CTATGATCTGGCCAACACTCTGAAGAGACTTCAAATCATCTTCTGTTTTATTAAATTCCT
                      ____________________________________________________________
consensus             CTATGATCTGGCCAACACTCTGAAGAGACTTCAAATCATCTTCTGTTTTATTAAATTCCT
 
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JMFF032O18+           TTTTTGTAGCCCGCAAATTCTCCCTTGCTGCTCGTACGCGGGATTCGAGCTCCTTGTGCT
JMFF032O21+           TTTTTGTAGCCCGCAAATTCTCCCTTGCTGCTCGTACGCGGGATTCGAGCTCCTTGTGCT
JMFF046O06+           TTTTTGTAGCCCGCAAATTCTCCCTTGCTGCTCGTACGCGGGATTCGAGCTCCTTGTGCT
                      ____________________________________________________________
consensus             TTTTTGTAGCCCGCAAATTCTCCCTTGCTGCTCGTACGCGGGATTCGAGCTCCTTGTGCT
 
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JMFF032O18+           GAAGAAGCTTTTTCCGGTAATCGGCAGTGGCCGTGCGGCGACGAGTGGCGTCTTCAGATG
JMFF032O21+           GAAGAAGCTTTTTCCGGTAATCGGCAGTGGCCGTGCGGCGACGAGTGGCGTCTTCAGATG
JMFF046O06+           GAAGAAGCTTTTTCCGGTAATCGGCAGTGGCCGTGCGGCGACGAGTGGCGTCTTCAGATG
                      ____________________________________________________________
consensus             GAAGAAGCTTTTTCCGGTAATCGGCAGTGGCCGTGCGGCGACGAGTGGCGTCTTCAGATG
 
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JMFF032O18+           CCTCGCTCGTCATCGGAGTTTAATGATAGATCTGTAAATCGACGAAGTAAGAAAGAAGGC
JMFF032O21+           CCTCGCTCGTCATCGGAGTTTAATGATAGATCTGTAAATCGACGAAGTAAGAAAGAAGGC
JMFF046O06+           CCTCGCTCGTCATCGGAGTTTAATGATAGATCTGTAAATCGACGAAGTAAGAAAGAAGGC
                      ____________________________________________________________
consensus             CCTCGCTCGTCATCGGAGTTTAATGATAGATCTGTAAATCGACGAAGTAAGAAAGAAGGC
 
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JMFF032O18+           GAACTTCTTC                                                  
JMFF032O21+           GAACTTCTTCAATTCCCAACTTGTGATGAAAGAAACGTATTACTCTTTCTCTT       
JMFF046O06+           GAACTTCTTCAATTCCCAACTTGTGATGAAAGAAACGTATTACTCTTTCTCTTAAAATTC
                      ____________________________________________________________
consensus             GAACTTCTTCAATTCCCAACTTGTGATGAAAGAAACGTATTACTCTTTCTCTTAAAATTC