| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011B04 | Sequence | 538 | 004650 (4) | ref|XP_009782512.1| | 6e-54 | PREDICTED: uncharacterized protein At1g51745 [Nicotiana sylvestris] ref|XP_00978 | 757 | 001208 (4) | ref|XP_009614718.1| | 6e-41 | PREDICTED: uncharacterized protein At1g51745-like isoform X2 [Nicotiana tomento |
| JMFF028M06 | Sequence | 264 | 004650 (4) | ref|XP_009782512.1| | 2e-16 | PREDICTED: uncharacterized protein At1g51745 [Nicotiana sylvestris] ref|XP_00978 | 715 | 001208 (4) | ref|XP_009614718.1| | 2e-32 | PREDICTED: uncharacterized protein At1g51745-like isoform X2 [Nicotiana tomento |
| JMFF040L12 | Sequence | 586 | 004650 (4) | ref|XP_009782512.1| | 2e-54 | PREDICTED: uncharacterized protein At1g51745 [Nicotiana sylvestris] ref|XP_00978 | 788 | 001208 (4) | ref|XP_009614718.1| | 4e-42 | PREDICTED: uncharacterized protein At1g51745-like isoform X2 [Nicotiana tomento |
| JMFF045L23 | Sequence | 623 | 004650 (4) | ref|XP_009782512.1| | 8e-58 | PREDICTED: uncharacterized protein At1g51745 [Nicotiana sylvestris] ref|XP_00978 | 421 | 001208 (4) | |||
This contig is upended
. : . : . : . : . : . :
JMFF045L23+ AGAGTGCGATAATTTAGGTTTTG
____________________________________________________________
consensus AGAGTGCGATAATTTAGGTTTTG
. : . : . : . : . : . :
JMFF040L12+ TCTTCAGAGCTACTATAATCCCCATTCACATTTTCAATTCCTTCTCGGG
JMFF011B04+ G
JMFF045L23+ AACGTGAATTATCTTCAGAGCTACTATAATCCCCATTCACATTTTCAATTCCTTCTCGGG
____________________________________________________________
consensus AACGTGAATTATCTTCAGAGCTACTATAATCCCCATTCACATTTTCAATTCCTTCTCGGG
. : . : . : . : . : . :
JMFF040L12+ ACGAAGCAGGTAACTCTCCAATAAGATTTTGCCCTCCATTTTGCTTATCTAATCCCAAAG
JMFF011B04+ ACGAAGCAGGTAACTCTCCAATAAGATTTTGCCCTCCATTTTGCTTATCTAATCCCAAAG
JMFF045L23+ ACGAAGCAGGTAACTCTCCAATAAGATTTTGCCCTCCATTTTGCTTATCTAATCCCAAAG
____________________________________________________________
consensus ACGAAGCAGGTAACTCTCCAATAAGATTTTGCCCTCCATTTTGCTTATCTAATCCCAAAG
. : . : . : . : . : . :
JMFF040L12+ AAAAACTGGGATTAGCTTTTCCAAGGAAACTTCTTTCAATCTCAAGAGCATGAAGAATGG
JMFF011B04+ AAAAACTGGGATTAGCTTTTCCAAGGAAACTTCTTTCAATCTCAAGAGCATGAAGAATGG
JMFF045L23+ AAAAACTGGGATTAGCTTTTCCAAGGAAACTTCTTTCAATCTCAAGAGCATGAAGAATGG
____________________________________________________________
consensus AAAAACTGGGATTAGCTTTTCCAAGGAAACTTCTTTCAATCTCAAGAGCATGAAGAATGG
. : . : . : . : . : . :
JMFF040L12+ CATCTTCTCTGCGGTTATATTTCACTGCCTTCCTAGAACCACTAGCTGCAACTAACAAAG
JMFF011B04+ CATCTTCTCTGCGGTTATATTTCACTGCCTTCCTAGAACCACTAGCTGCAACTAACAAAG
JMFF045L23+ CATCTTCTCTGCGGTTATATTTCACTGCCTTCCTAGAACCACTAGCTGCAACTAACAAAG
____________________________________________________________
consensus CATCTTCTCTGCGGTTATATTTCACTGCCTTCCTAGAACCACTAGCTGCAACTAACAAAG
. : . : . : . : . : . :
JMFF040L12+ CTTTCTCAATGCACTTATCATACTCCCCACAACGAAAAGCCCTAACTCGCTTAGAGTTCT
JMFF011B04+ CTTTCTCAATGCACTTATCATACTCCCCACAACGAAAAGCCCTAACTCGCTTAGAGTTCT
JMFF045L23+ CTTTCTCAATGCACTTATCATACTCCCCACAACGAAAAGCCCTAACTCGCTTAGAGTTCT
____________________________________________________________
consensus CTTTCTCAATGCACTTATCATACTCCCCACAACGAAAAGCCCTAACTCGCTTAGAGTTCT
. : . : . : . : . : . :
JMFF040L12+ CAAGATTATGCCAGTCTATACATGTATCCTTTAATCCAAGGAGTTTAACTGGAGTTCCAG
JMFF011B04+ CAAGATTATGCCAGTCTATACATGTATCCTTTAATCCAAGGAGTTTAACTGGAGTTCCAG
JMFF028M06+ ATCCAAGGAGTTTAACTGGAGTTCCAG
JMFF045L23+ CAAGATTATGCCAGTCTATACATGTATCCTTTAATCCAAGGAGTTTAACTGGAGTTCCAG
____________________________________________________________
consensus CAAGATTATGCCAGTCTATACATGTATCCTTTAATCCAAGGAGTTTAACTGGAGTTCCAG
. : . : . : . : . : . :
JMFF040L12+ ATCTCCCAGAAACCGAACTTCTCTCGGGCAACTCTTCCGGGCACAAAATTTGGCCCGGCC
JMFF011B04+ ATCTCCCAGAAACCGAACTTCTCTCGGGCAACTCTTCCGGGCACAAAATTTGGCCCGGCC
JMFF028M06+ ATCTCCCAGAAACCGAACTTCTCTCGGGCAACTCTTCCGGGCACAAAATTTGGCCCGGCC
JMFF045L23+ ATCTCCCAGAAACCGAACTTCTCTCGGGCAACTCTTCCGGGCACAAAATTTGGCCCGGCC
____________________________________________________________
consensus ATCTCCCAGAAACCGAACTTCTCTCGGGCAACTCTTCCGGGCACAAAATTTGGCCCGGCC
. : . : . : . : . : . :
JMFF040L12+ ACCACTGTCCATTTCGCCGGCGGACCCAAACCAACCCGCTCGCCGGAACGTCAATGGGTT
JMFF011B04+ ACCACTGTCCATTTCGCCGGCGGACCCAAACCAACCCGCTCGCCGGAACGTCAATGGGTT
JMFF028M06+ ACCACTGTCCATTTCGCCGGCGGNCCCAANCCAACCCGCTCGCCGGAACGTCAATGGGTT
JMFF045L23+ ACCACTGTCCATTTCGCCGGCGGACCCAAACCAACCCGCTCGCCGGAACGTCAATGGGTT
____________________________________________________________
consensus ACCACTGTCCATTTCGCCGGCGGACCCAAACCAACCCGCTCGCCGGAACGTCAATGGGTT
. : . : . : . : . : . :
JMFF040L12+ TAGCTCTGCACTCCCCAGAACTTCCCATGACTCTAATTCAACTAATGGTATGATGATTGA
JMFF011B04+ TAGCTCTGCACTCCCCAGAACTTCCCATGACTCTAATTCAACTAATGGTATGATGATTGA
JMFF028M06+ TAGCTCTGCACTCCCCAGAACTTCCCATGACTCTAATTCAACTAATGGTATGATGATTGA
JMFF045L23+ TAGCTCTGCACTCCCCAGAACTTCCCATGACTCTAATTCAACTAATGGTATGATGATTGA
____________________________________________________________
consensus TAGCTCTGCACTCCCCAGAACTTCCCATGACTCTAATTCAACTAATGGTATGATGATTGA
. : . : . : . : . : . :
JMFF040L12+ TGGAAGAAACTAAAATTCATCAAAAATTCAATATGAACAGAACATTTCAAAGCACAC
JMFF011B04+ TGGAAGAAACTAAAATTCATCAAAAATTCAATATGAACAGAACATTTCAAAGCACAC
JMFF028M06+ TGGAAGAAACTAAAATTCATCAAAAATTCAATATGAACAGAACATTTCAAAGCACAC
JMFF045L23+ TGGAAGAAACTAAAATTCATCAAAAATTCAATATGAACAGAACATTTCAAAGCACACCGG
____________________________________________________________
consensus TGGAAGAAACTAAAATTCATCAAAAATTCAATATGAACAGAACATTTCAAAGCACACCGG