Contig 004634:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043G17Sequence635004634 (2)ref|XP_006338902.1|1e-102PREDICTED: coatomer subunit delta-like isoform X1 [Solanum tuberosum] ref|XP_006610005682 (3)ref|XP_004230447.1|5e-59PREDICTED: coatomer subunit delta-like [Solanum lycopersicum] ref|XP_010314473.1
JMSF022O10Sequence644004634 (2)ref|XP_006338902.1|8e-111PREDICTED: coatomer subunit delta-like isoform X1 [Solanum tuberosum] ref|XP_006723005682 (3)ref|XP_004230447.1|1e-49PREDICTED: coatomer subunit delta-like [Solanum lycopersicum] ref|XP_010314473.1

Alignment

This contig is upended


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JMSF022O10+                                                              TCTCAATCT
                      ____________________________________________________________
consensus                                                                TCTCAATCT
 
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JMSF022O10+           TGCTTTTGTCAATCTCACTAGCTTTGCGCTTCATGACATCCTTAGTTTCATTAATCTTGC
JMFF043G17+                                    GCGCTTCATGACATCCTTAGTTTCATTAATCTTGC
                      ____________________________________________________________
consensus             TGCTTTTGTCAATCTCACTAGCTTTGCGCTTCATGACATCCTTAGTTTCATTAATCTTGC
 
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JMSF022O10+           TCTGCAAGACCATCTTGTGCAATCTTTCTTCATGACTCTCCATTTCACAGTACTGTTTGA
JMFF043G17+           TCTGCAAGACCATCTTGTGCAATCTTTCTTCATGACTCTCCATTTCACAGTACTGTTTGA
                      ____________________________________________________________
consensus             TCTGCAAGACCATCTTGTGCAATCTTTCTTCATGACTCTCCATTTCACAGTACTGTTTGA
 
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JMSF022O10+           CTTGTGCGCCCGTAACATTCTCCTTATGCCCCAGAGATATGACTTCATCAAATGCAAAAA
JMFF043G17+           CTTGTGCGCCCGTAACATTCTCCTTATGCCCCAGAGATATGACTTCATCAAATGCAAAAA
                      ____________________________________________________________
consensus             CTTGTGCGCCCGTAACATTCTCCTTATGCCCCAGAGATATGACTTCATCAAATGCAAAAA
 
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JMSF022O10+           TGAGCTCAAATGCTGTTTTACATATGCCCTCCTCATCTAGGGAATAACAATACTCAGGCA
JMFF043G17+           TGAGCTCAAATGCTGTTTTACATATGCCCTCCTCATCTAGGGAATAACAATACTCAGGCA
                      ____________________________________________________________
consensus             TGAGCTCAAATGCTGTTTTACATATGCCCTCCTCATCTAGGGAATAACAATACTCAGGCA
 
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JMSF022O10+           CGAGTTTTGAAAGCAGTCTAAGTGTCTCCAGATCTTCTAGAATGTTGCTCTGTTTGTTAG
JMFF043G17+           CGAGTTTTGAAAGCAGTCTAAGTGTCTCCAGATCTTCTAGAATGTTGCTCTGTTTGTTAG
                      ____________________________________________________________
consensus             CGAGTTTTGAAAGCAGTCTAAGTGTCTCCAGATCTTCTAGAATGTTGCTCTGTTTGTTAG
 
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JMSF022O10+           TGACAAGCAGCAAGTACAGAGACTCTATTGGCTGATAAACATATCGCACATTTTCAGTCT
JMFF043G17+           TGACAAGCAGCAAGTACAGAGACTCTATTGGCTGATAAACATATCGCACATTTTCAGTCT
                      ____________________________________________________________
consensus             TGACAAGCAGCAAGTACAGAGACTCTATTGGCTGATAAACATATCGCACATTTTCAGTCT
 
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JMSF022O10+           CAACATAAGTGTGCTGTTTTCCAGTTCCAACCAATTTTGGGAAAGCAGCAAGGTATCCCT
JMFF043G17+           CAACATAAGTGTGCTGTTTTCCAGTTCCAACCAATTTTGGGAAAGCAGCAAGGTATCCCT
                      ____________________________________________________________
consensus             CAACATAAGTGTGCTGTTTTCCAGTTCCAACCAATTTTGGGAAAGCAGCAAGGTATCCCT
 
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JMSF022O10+           CAATTCTAATTCGAGACATGTCCACAAACTGCCTCGAAACAAGTGCTTTCCCAGATTTGG
JMFF043G17+           CAATTCTAATTCGAGACATGTCCACAAACTGCCTCGAAACAAGTGCTTTCCCAGATTTGG
                      ____________________________________________________________
consensus             CAATTCTAATTCGAGACATGTCCACAAACTGCCTCGAAACAAGTGCTTTCCCAGATTTGG
 
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JMSF022O10+           TTACAATGGAAGCTGCTAGAACAACCATCTTGA                           
JMFF043G17+           TTACAATGGAAGCTGCTAGAACAACCATCTTGAACTCTCGATCCTTAGAAATGAGCAGTC
                      ____________________________________________________________
consensus             TTACAATGGAAGCTGCTAGAACAACCATCTTGAACTCTCGATCCTTAGAAATGAGCAGTC
 
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JMFF043G17+           AATTATGCTGAATCAGAAACCGGACCTCAATGTAGAAACACTCGATTCGCGCCCCTTCTT
                      ____________________________________________________________
consensus             AATTATGCTGAATCAGAAACCGGACCTCAATGTAGAAACACTCGATTCGCGCCCCTTCTT
 
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JMFF043G17+           TCGGTCTGGAGCAGTAAAAACTAAAAACGAGATCAGTGTGATTCAGTGAAGGAGCAAAAT
                      ____________________________________________________________
consensus             TCGGTCTGGAGCAGTAAAAACTAAAAACGAGATCAGTGTGATTCAGTGAAGGAGCAAAAT