| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004N01 | Sequence | 465 | 004631 (8) | emb|CDY03912.1| | 1e-36 | BnaC07g11370D [Brassica napus] | 480 | 004631 (8) | emb|CDY03912.1| | 2e-36 | BnaC07g11370D [Brassica napus] |
| JMFF042K23 | Sequence | 570 | 004631 (8) | emb|CDY03912.1| | 6e-36 | BnaC07g11370D [Brassica napus] | |||||
| JMFF044A17 | Sequence | 633 | 004631 (8) | emb|CDY03912.1| | 2e-35 | BnaC07g11370D [Brassica napus] | |||||
| JMFN014G12 | Sequence | 463 | 004631 (8) | gb|AFK48951.1| | 1e-35 | unknown [Lotus japonicus] | |||||
| JMFN025C13 | Sequence | 495 | 004631 (8) | gb|AFK48951.1| | 2e-35 | unknown [Lotus japonicus] | |||||
| JMFS018B12 | Sequence | 469 | 004631 (8) | gb|AFK48951.1| | 4e-35 | unknown [Lotus japonicus] | |||||
| JMFS155E04 | Sequence | 493 | 004631 (8) | gb|AFK48951.1| | 2e-35 | unknown [Lotus japonicus] | |||||
This contig is upended
. : . : . : . : . : . :
JMFF044A17+ TCCCATAGACCCCAAAGCCTTACTGGCAGGGAGTGCC
____________________________________________________________
consensus TCCCATAGACCCCAAAGCCTTACTGGCAGGGAGTGCC
. : . : . : . : . : . :
JMFF044A17+ CTGCAGTTAAGTGTCCTAGAAGGCTGGGGATCGTCGAGTTAATTAAAGACTGGCCCTGGA
____________________________________________________________
consensus CTGCAGTTAAGTGTCCTAGAAGGCTGGGGATCGTCGAGTTAATTAAAGACTGGCCCTGGA
. : . : . : . : . : . :
JMFF004N01+ AT
rJMFF004N01- GTAATTTGACAACCAAT
JMFN025C13+ GACAACCAAT
JMFS155E04+ GACAACCAAT
JMFN014G12+ GTCTAATTAAGATCACGTAATTTGACAACCAAT
JMFS018B12+ TCTAATTAAGATCACGTAATTTGACAACCAAT
JMFF044A17+ GAGTTTTTTTTTTTTTNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGACAACCAAT
JMFF042K23+ GACAACCAAT
____________________________________________________________
consensus GAGTTTTTTTTTTTTTNTTCNNNNNNNGTCTAATTAAGATCACGTAATTTGACAACCAAT
. : . : . : . : . : . :
JMFF004N01+ CACTTACAACATACCATGTCTCAAAAAATTTTACCACTTGAGAGTACTTTAAACTAAGAA
rJMFF004N01- CACTTACAACATACCATGTCTCAAAAAATTTTACCACTTGAGAGTACTTTAAACTAAGAA
JMFN025C13+ CACTTACAACATACCATGTCTCAAAAAATTTTACCACTTGAGAGTACTTTAAACTAAGAA
JMFS155E04+ CACTTACAACATACCATGTCTCAAAAAATTTTACCACTTGAGAGTACTTTAAACTAAGAA
JMFN014G12+ CACTTACAACATACCATGTCTCAAAAAATTTTACCACTTGAGAGTACTTTAAACTAAGAA
JMFS018B12+ CACTTACAACATACCATGTCTCAAAAAATTTTACCACTTGAGAGTACTTTAAACTAAGAA
JMFF044A17+ CACTTACAACATACCATGTCTCAAAAAATTTTACCACTTGAGAGTACTTTAAACTAAGAA
JMFF042K23+ CACTTACAACATACCATGTCTCAAAAAATTTTACCACTTGAGAGTACTTTAAACTAAGAA
____________________________________________________________
consensus CACTTACAACATACCATGTCTCAAAAAATTTTACCACTTGAGAGTACTTTAAACTAAGAA
. : . : . : . : . : . :
JMFF004N01+ CATGGAAAAAGACACTAAAACAGGCAGCCATTCATTCTAGTTGTCTAAGTACGTCAAAAC
rJMFF004N01- CATGGAAAAAGACACTAAAACAGGCAGCCATTCATTCTAGTTGTCTAAGTACGTCAAAAC
JMFN025C13+ CATGGAAAAAGACACTAAAACAGGCAGCCATTCATTCTAGTTGTCTAAGTACGTCAAAAC
JMFS155E04+ CATGGAAAAAGACACTAAAACAGGCAGCCATTCATTCTAGTTGTCTAAGTACGTCAAAAC
JMFN014G12+ CATGGAAAAAGACACTAAAACAGGCAGCCATTCATTCTAGTTGTCTAAGTACGTCAAAAC
JMFS018B12+ CATGGAAAAAGACACTAAAACAGGCAGCCATTCATTCTAGTTGTCTAAGTACGTCAAAAC
JMFF044A17+ CATGGAAAAAGACACTAAAACAGGCAGCCATTCATTCTAGTTGTCTAAGTACGTCAAAAC
JMFF042K23+ CATGGAAAAAGACACTAAAACAGGCAGCCATTCATTCTAGTTGTCTAAGTACGTCAAAAC
____________________________________________________________
consensus CATGGAAAAAGACACTAAAACAGGCAGCCATTCATTCTAGTTGTCTAAGTACGTCAAAAC
. : . : . : . : . : . :
JMFF004N01+ TAAGCCATTCCCCCGCTTGTTGCTGTCCGGATGATCTGGAATAGAGATGATCCGATGACA
rJMFF004N01- TAAGCCATTCCCCCGCTTGTTGCTGTCCGGATGATCTGGAATAGAGATGATCCGATGACA
JMFN025C13+ TAAGCCATTCCCCCGCTTGTTGCTGTCCGGATGATCTGGAATAGAGATGATCCGATGACA
JMFS155E04+ TAAGCCATTCCCCCGCTTGTTGCTGTCCGGATGATCTGGAATAGAGATGATCCGATGACA
JMFN014G12+ TAAGCCATTCCCCCGCTTGTTGCTGTCCGGATGATCTGGAATAGAGATGATCCGATGACA
JMFS018B12+ TAAGCCATTCCCCCGCTTGTTGATGTCCGGATGATCTGGAATAGAGATGATCCGATGACA
JMFF044A17+ TAAGCCATTCCCCCGCTTGTTGCTGTCCGGATGATCTGGAATAGAGATGATCCGATGACA
JMFF042K23+ TAAGCCATTCCCCCGCTTGTTGCTGTCCGGATGATCTGGAATAGAGATGATCCGATGACA
____________________________________________________________
consensus TAAGCCATTCCCCCGCTTGTTGCTGTCCGGATGATCTGGAATAGAGATGATCCGATGACA
. : . : . : . : . : . :
JMFF004N01+ ACAAAAACGAAGAACCCAAGCAAGATGGGTCCTACGGGATAGTTGTTTCCCTTCTTTGCA
rJMFF004N01- ACAAAAACGAAGAACCCAAGCAAGATGGGTCCTACGGGATAGTTGTTTCCCTTCTTTGCA
JMFN025C13+ ACAAAAACGAAGAACCCAAGCAAGATGGGTCCTACGGGATAGTTGTTTCCCTTCTTTGCA
JMFS155E04+ ACAAAAACGAAGAACCCAAGCAAGATGGGTCCTACGGGATAGTTGTTTCCCTTCTTTGCA
JMFN014G12+ ACAAAAACGAAGAACCCAAGCAAGATGGGTCCTACGGGATAGTTGTTTCCCTTCTTTGCA
JMFS018B12+ ACAAAAACGAAGAACCCAAGCAAGATGGGTCCTACGGGATAGTTGTTTCCCTTCTTTGCA
JMFF044A17+ ACAAAAACGAAGAACCCAAGCAAGATGGGTCCTACGGGATAGTTGTTTCCCTTCTTTGCA
JMFF042K23+ ACAAAAACGAAGAACCCAAGCAAGATGGGTCCTACGGGATAGTTGTTTCCCTTCTTTGCA
____________________________________________________________
consensus ACAAAAACGAAGAACCCAAGCAAGATGGGTCCTACGGGATAGTTGTTTCCCTTCTTTGCA
. : . : . : . : . : . :
JMFF004N01+ GTGGTCTCGGGGACAAATCCTCGCTTGGTGATGTTTTTCTCAAACTTCTCAACCTTCCTG
rJMFF004N01- GTGGTCTCGGGGACAAATCCTCGCTTGGTGATGTTTTTCTCAAACTTCTCAACCTTCCTG
JMFN025C13+ GTGGTCTCGGGGACAAATCCTCGCTTGGTGATGTTTTTCTCAAACTTCTCAACCTTCCTG
JMFS155E04+ GTGGTCTCGGGGACAAATCCTCGCTTGGTGATGTTTTTCTCAAACTTCTCAACCTTCCTG
JMFN014G12+ GTGGTCTCGGGGACAAATCCTCGCTTGGTGATGTTTTTCTCAAACTTCTCAACCTTCCTG
JMFS018B12+ GTGGTCTCGGGGACAAATCCTCGCTTGGTGATGTTTTTCTCAAACTTCTCAACCTTCCTG
JMFF044A17+ GTGGTCTCGGGGACAAATCCTCGCTTGGTGATGTTTTTCTCAAACTTCTCAACCTTCCTG
JMFF042K23+ GTGGTCTCGGGGACAAATCCTCGCTTGGTGATGTTTTTCTCAAACTTCTCAACCTTCCTG
____________________________________________________________
consensus GTGGTCTCGGGGACAAATCCTCGCTTGGTGATGTTTTTCTCAAACTTCTCAACCTTCCTG
. : . : . : . : . : . :
JMFF004N01+ CTAGCAAGACGCCTTGATGTTGTCATGGTTTAATGGAAGATCGGGTGGGCGTAAAACAAT
rJMFF004N01- CTAGCAAGACGCCTTGATGTTGTCATGGTTTAATGGAAGATCGGGTGGGCGTAAAACAAT
JMFN025C13+ CTAGCAAGACGCCTTGATGTTGTCATGGTTTAATGGAAGATCGGGTGGGCGTAAAACAAT
JMFS155E04+ CTAGCAAGACGCCTTGATGTTGTCATGGTTTAATGGAAGATCGGGTGGGCGTAAAACAAT
JMFN014G12+ CTAGCAAGACGCCTTGATGTTGTCATGGTTTAATGGAAGATCGGGTGGGCGTAAAACAAT
JMFS018B12+ CTAGCAAGACGCCTTGATGTTGTCATGGTTTAATGGAAGATCGGGTGGGCGTAAAACAAT
JMFF044A17+ CTAGCAAGACGCCTTGATGTTGTCATGGTTTAATGGAAGATCGGGTGGGCGTAAAACAAT
JMFF042K23+ CTAGCAAGACGCCTTGATGTTGTCATGGTTTAATGGAAGATCGGGTGGGCGTAAAACAAT
____________________________________________________________
consensus CTAGCAAGACGCCTTGATGTTGTCATGGTTTAATGGAAGATCGGGTGGGCGTAAAACAAT
. : . : . : . : . : . :
JMFF004N01+ TTGGACGAAAAACACCGGAGAATTTTCGTTTCAGCTGAGTACCTGCGATTCTCCGGCGAC
rJMFF004N01- TTGGACGAAAAACACCGGAGAATTTTCGTTTCAGCTGAGTACCTGCGATTCTCCGGCGAC
JMFN025C13+ TTGGACGGAAAACACCGGAGAATTTTCGTTTCAGCTGAGTACCTGCGATTCTCCGGCGAC
JMFS155E04+ TTGGACGGAAAACACCGGAGAATTTTCGTTTCAGCTGAGTACCTGCGATTCTCCGGCGAC
JMFN014G12+ TTGGACGGAAAACACCGGAGAATTTTCGTTTCAGCTGAGTACCTGCGATTCTCCGGCGA
JMFS018B12+ TTGGACGGAAAACACCGGAGAATTTTCGTTTCAGCTGAGTACCTGCGATTCTCCGGCGAC
JMFF044A17+ TTGGACGGAAAACACCGGAGAATTTTCGTTTCAGCTGAGTACCTGCGATTCTCCGGCGAC
JMFF042K23+ TTGGACGGAAAACACCGGAGAATTTTCGTTTCAGATGAGTACCTGCGATTCTCCGGCGAC
____________________________________________________________
consensus TTGGACGGAAAACACCGGAGAATTTTCGTTTCAGCTGAGTACCTGCGATTCTCCGGCGAC
. : . : . : . : . : . :
JMFF004N01+ GAGGCGGTTTCTCTCTCTTCTCTCGCTCCGATCGTTTATAATT
rJMFF004N01- GAGGCGGTTTCTCTCTCTTCTCTCGCTCCGATCGTTTATAATT
JMFN025C13+ GAGGCGGTTTCTCTCTCTTCTC
JMFS155E04+ GAGGCGGTTTCTCTCTCTTC
JMFS018B12+ GAGGCGGTTTCTCTCTC
JMFF044A17+ GAGGCGGTTTCTCTCTCTTCTCTCGCTCCGATCGTTTATAATTGTCGTGATGAATT
JMFF042K23+ GAGGCGGTTTCTCTCTCTTCTCTCGCTCCGATCGTTTATAATTGTCGTGATGAATTCGGT
____________________________________________________________
consensus GAGGCGGTTTCTCTCTCTTCTCTCGCTCCGATCGTTTATAATTGTCGTGATGAATTCGGT