Contig 004627:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF044J11+                                                          CGCCTGGAATAGC
                      ____________________________________________________________
consensus                                                            CGCCTGGAATAGC
 
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JMFF044J11+           CCTCAAATCATCGTCGGAAATCCTCCTACTACCATTTCCGTTGTGCTTATTGCCGGAAAA
JMFF041O14+                               TCCTCCTACTACCATTTCCGTTGTGCTTATTGCCGGAAAA
                      ____________________________________________________________
consensus             CCTCAAATCATCGTCGGAAATCCTCCTACTACCATTTCCGTTGTGCTTATTGCCGGAAAA
 
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JMFF044J11+           GCTGATAATATTGGAAGATTCGCCGGTGAGCACGGCGCTGCAGGAAGACTGCGGGGAAGA
JMFS004B08+                                       AGCACGGCGCTGCAGGAAGACTGCGGGGAAGA
JMFF041O14+           GCTGATAATATTGGAAGATTCGCCGGTGAGCACGGCGCTGCAGGAAGACTGCGGGGAAGA
                      ____________________________________________________________
consensus             GCTGATAATATTGGAAGATTCGCCGGTGAGCACGGCGCTGCAGGAAGACTGCGGGGAAGA
 
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JMFF044J11+           AGAGGAGGCGTTGAGCTCGGAGAGCATGCTCTGGATCCAGCCGGTGAGATCAGAAGGGTT
JMFS004B08+           AGAGGAGGCGTTGAGCTCGGAGAGCATGCTCTGGATCCAGCCGGTGAGATCAGAAGGGTT
JMFF041O14+           AGAGGAGGCGTTGAGCTCGGAGAGCATGCTCTGGATCCAGCCGGTGAGATCAGAAGGGTT
                      ____________________________________________________________
consensus             AGAGGAGGCGTTGAGCTCGGAGAGCATGCTCTGGATCCAGCCGGTGAGATCAGAAGGGTT
 
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JMFF044J11+           GTAGTGAACCGTAGAAGTCGAAAGATGGGAAATCCCATCCTCCATGGCCATCTCCAGCTG
JMFS004B08+           GTAGTGAACCGTAGAAGTCGAAAGATGGGAAATCCCATCCTCCATGGCCATCTCCAGCTG
JMFF041O14+           GTAGTGAACCGTAGAAGTCGAAAGATGGGAAATCCCATCCTCCATGGCCATCTCCAGCTG
                      ____________________________________________________________
consensus             GTAGTGAACCGTAGAAGTCGAAAGATGGGAAATCCCATCCTCCATGGCCATCTCCAGCTG
 
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JMFF044J11+           CTCAAGCTTCTCAGCCACGTCCGCCATATCCGAAGTCTTCACCTTGTAGCCCAACACCGC
JMFS004B08+           CTCAAGCTTCTCAGCCACGTCCGCCATATCCGAAGTCTTCACCTTGTAGCCCAACACCGC
JMFF041O14+           CTCAAGCTTCTCAGCCACGTCCGCCATATCCGAAGTCCTCACCTTGTAGCCCAACACCGC
                      ____________________________________________________________
consensus             CTCAAGCTTCTCAGCCACGTCCGCCATATCCGAAGTCTTCACCTTGTAGCCCAACACCGC
 
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JMFF044J11+           CAGTAGCTCATCCATTCCGGCATCCGGCGGGTGTTCTTCCCAAATCTTGCCTTTACCCAT
JMFS004B08+           CAGTAGCTCATCCATTCCGGCATCCGGCGGGTGTTCTTCCCAAATCTTGCCTTTACCCAT
JMFF041O14+           CAGTAGCTCATCCATTCCGGCATCCGGCGGGTGTTCTTCCCAAATCTTGCCTTTACCCAT
                      ____________________________________________________________
consensus             CAGTAGCTCATCCATTCCGGCATCCGGCGGGTGTTCTTCCCAAATCTTGCCTTTACCCAT
 
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JMFF044J11+           TGACGAGCTCGCCGCCTTGGGTCGATCGCGTTCCCTCTTCATTCTGCTCTGTGATTTCAA
JMFS004B08+           TGACGAGCTCGCCGCCTTGGGTCGATCGCGTTCCCTCTTCATTCTGCTCTGTGATTTCAA
JMFF041O14+           TGACGAGCTCGCCGCCTTGGGTCGATCGCGTTCCCTCTTCATTCTGCTCTGTGATTTCAA
                      ____________________________________________________________
consensus             TGACGAGCTCGCCGCCTTGGGTCGATCGCGTTCCCTCTTCATTCTGCTCTGTGATTTCAA
 
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JMFF044J11+           AAAGTCGAGAAATTTACTGCGGATTTCTGCTCAACAAAGCCAGATCATTTCATGTGAGTT
JMFS004B08+           AAAGTCGAGAAATTTACTGCGGATTTCTGCTCAACAAAGCCAGATCATTTCATGTGAGTT
JMFF041O14+           AAAGTCGAGAAATTTACTGCGGATTTCTGCTCAACAAAGCCAGATCATTTCATGTGAGTT
                      ____________________________________________________________
consensus             AAAGTCGAGAAATTTACTGCGGATTTCTGCTCAACAAAGCCAGATCATTTCATGTGAGTT
 
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JMFF044J11+           CCCAAGCTTTTCAATTTCTGGGTTTTTGCATCAATTTCAGATTCGGGGGTTACTTTATCA
JMFS004B08+           CCCAAGCTTTTCAATTTCTGGGTTTTTGCATCCATTTCAGATTCGGGGGTTACTTTATCA
JMFF005E21+                                                         GGGTTACTTTATCA
JMFF041O14+           CCCAAGCTTTTCAATTTCTGGGTTTTTGCATCAATTTCAGATTCGGGGGTTACTTTATCA
                      ____________________________________________________________
consensus             CCCAAGCTTTTCAATTTCTGGGTTTTTGCATCAATTTCAGATTCGGGGGTTACTTTATCA
 
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JMFF044J11+           TTTGGTTACTATTATTATTTTCTCTAGTTTCTGTGGATTCGAGAAAAAAAAAAAGAGTGC
JMFS004B08+           TTTGGTTACTATTATTATTTTCTCTAGTTTCTGTGGATTCGAG-AAAAAAAAAAGAGTGC
JMFF005E21+           TTTGGTTACTATTATTATTTTCTCTAGNTTCTGNGGATTCGAG-AAAAAAAAAAGAGTGC
JMFF041O14+           TTTGGTTACTATTATTATTTTCTCTAGTTTCTGTGGATTCGAG-AAAAAAAAAAGAGTGC
                      ____________________________________________________________
consensus             TTTGGTTACTATTATTATTTTCTCTAGTTTCTGTGGATTCGAG-AAAAAAAAAAGAGTGC
 
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JMFF044J11+           TCGTGAAGAAGGCGC                                             
JMFS004B08+           TCGTGAAGAAGGCGCGAGCTCCAAGAAAGCAGAGAGAGAGAAA                 
JMFF005E21+           TCGTGAAGAAGGCGCGAGCTCCAAGAAAGCAGAGAGAGAGAAAGGATACGGAGGACTT  
JMFF041O14+           TCGTGAAGAAGGCGCGAGCTCCAAGAAAGCAGAGAGAGAGAAAGGATACGGAGGACTTGA
                      ____________________________________________________________
consensus             TCGTGAAGAAGGCGCGAGCTCCAAGAAAGCAGAGAGAGAGAAAGGATACGGAGGACTTGA