Contig 004624:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041L24Sequence659004624 (3)gb|EYU44300.1|1e-72hypothetical protein MIMGU_mgv1a013024mg [Erythranthe guttata]589004624 (3)gb|KJB06294.1|9e-64hypothetical protein B456_001G081800 [Gossypium raimondii]
JMFN029E17Sequence636004624 (3)gb|EYU44300.1|3e-71hypothetical protein MIMGU_mgv1a013024mg [Erythranthe guttata]

Alignment

This contig is upended


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rJMFF041L24-                                     GTATGAAAAAAATTTTATTGCATGCCACAAATG
                      ____________________________________________________________
consensus                                        GTATGAAAAAAATTTTATTGCATGCCACAAATG
 
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rJMFF041L24-          TATGCTACATCTATATCTTTTGATTTACGGGAAAGCCATTTCATCTATATACTTTTTCAA
                      ____________________________________________________________
consensus             TATGCTACATCTATATCTTTTGATTTACGGGAAAGCCATTTCATCTATATACTTTTTCAA
 
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rJMFF041L24-          TGCACGTCTTGCATAAGTAAAACGCAAACACCAACACCAACTTGCACCTAGTCTCTCACA
                      ____________________________________________________________
consensus             TGCACGTCTTGCATAAGTAAAACGCAAACACCAACACCAACTTGCACCTAGTCTCTCACA
 
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rJMFF041L24-          ATGTCACCTTTTCCACTTACGGGAGAGACAACAGCAAGAATGACCAAACCGCACAAGACA
                      ____________________________________________________________
consensus             ATGTCACCTTTTCCACTTACGGGAGAGACAACAGCAAGAATGACCAAACCGCACAAGACA
 
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rJMFF041L24-          ACAATCAACACACCCATAGAATTCACCAACAACCCCTCGGTGGAATAGCGCGATATAACA
                      ____________________________________________________________
consensus             ACAATCAACACACCCATAGAATTCACCAACAACCCCTCGGTGGAATAGCGCGATATAACA
 
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rJMFF041L24-          TGGTTGGTTTGAAGAAATGTCAACTTCTCTAATATCCCCGTTGTGCAAGTAGCAACTGCT
                      ____________________________________________________________
consensus             TGGTTGGTTTGAAGAAATGTCAACTTCTCTAATATCCCCGTTGTGCAAGTAGCAACTGCT
 
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rJMFF041L24-          AGGGCATAGATATAAACCCCGAAAAAGACATGCCATGGTAGGAGACTAGCTCTGCTGTTC
                      ____________________________________________________________
consensus             AGGGCATAGATATAAACCCCGAAAAAGACATGCCATGGTAGGAGACTAGCTCTGCTGTTC
 
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rJMFF041L24-          CTTGAACCGCCTGGATACCAGAAGGTTGAAAAACCTGCAGCCCACTGAATGCCAAACAAC
JMFN029E17+                      TGGATACCAGAAGGTTGAAAAACCTGCAGCCCACTGAATGCCAAACAAC
JMFF041L24+            TTGAACCGCCTGGATACCAGAAGGTTGAANAACCTGCAGCCCACTGAATGCCAAACAAC
                      ____________________________________________________________
consensus             CTTGAACCGCCTGGATACCAGAAGGTTGAAAAACCTGCAGCCCACTGAATGCCAAACAAC
 
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rJMFF041L24-          AAGAGACAAGCTAGACCCAACCACGAGTGGAGGCTGTAAAAGTTGTCAATGCCCTTGTCG
JMFN029E17+           AAGAGACAAGCTAGACCCAACCACGAGTGGAGGCTGTAAAAGTTGTCAATGCCCTTGTCG
JMFF041L24+           AAGAGACAAGCTAGACCCAACCACGAGTGGAGGCTGTAAAAGTTGTCAATGCCCTTGTCG
                      ____________________________________________________________
consensus             AAGAGACAAGCTAGACCCAACCACGAGTGGAGGCTGTAAAAGTTGTCAATGCCCTTGTCG
 
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rJMFF041L24-          TTGTGAAACTTCAAAGCAGCCCATACACCGATCAGACCCAAAAAGAAAGCCAGGAATTGC
JMFN029E17+           TTGTGAAACTTCAAAGCAGCCCATACACCGATCAGACCCAAAAAGAAAGCCAGGAATTGC
JMFF041L24+           TTGTGAAACTTCAAAGCAGCCCATACACCGATCAGACCCAAAAAGAAAGCCAGGAATTGC
                      ____________________________________________________________
consensus             TTGTGAAACTTCAAAGCAGCCCATACACCGATCAGACCCAAAAAGAAAGCCAGGAATTGC
 
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rJMFF041L24-          AGAGCGAGATGGACTA                                            
JMFN029E17+           AGAGCGAGATGGACTAATTTTTTGTAGTTCTTTGTTCCCGAGACTGTCTTGTAAGCCAGC
JMFF041L24+           AGAGCGAGATGGACTAATTTTTTGTAGTTCTTTGTTCCCGAGACTGTCTTGTAAGCCAGC
                      ____________________________________________________________
consensus             AGAGCGAGATGGACTAATTTTTTGTAGTTCTTTGTTCCCGAGACTGTCTTGTAAGCCAGC
 
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JMFN029E17+           ATTGCTTCACCATTTAGAAGTACAAAGCTAATCACCATTAAAACAGGATGCACATTAAAG
JMFF041L24+           ATTGCTTCACCATTTAGAAGTACAAAGCTAATCACCATTAAAACAGGATGCACATTAAAG
                      ____________________________________________________________
consensus             ATTGCTTCACCATTTAGAAGTACAAAGCTAATCACCATTAAAACAGGATGCACATTAAAG
 
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JMFN029E17+           ATGAGATCTTTGTTGTCGGAGATGAGAGCCAAGCCTCCTCTGTAGTGCACGGTCCACGCC
JMFF041L24+           ATGAGATCTTTGTTGTCGGAGATGAGAGCCAAGCCTCCTCTGTAGTGCACGGTCCACGCC
                      ____________________________________________________________
consensus             ATGAGATCTTTGTTGTCGGAGATGAGAGCCAAGCCTCCTCTGTAGTGCACGGTCCACGCC
 
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JMFN029E17+           AGGACCAGCGCCATTACCGCGAAGCCGATGATCCTGACGAACAAGAAGATCGGGAACCTC
JMFF041L24+           AGGACCAGCGCCATTACCGCGAAGCCGATGATCCTGACGAACAAGAAGATCGGGAACCTC
                      ____________________________________________________________
consensus             AGGACCAGCGCCATTACCGCGAAGCCGATGATCCTGACGAACAAGAAGATCGGGAACCTC
 
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JMFN029E17+           ACTACCGGCACTGCCATGGGAACAGCTGCCTCCTCTTCCTCTTCCTCCTCCTCCTCTTCA
JMFF041L24+           ACTACCGGCACTGCCATGGGAACAGCTGCCTCCTCTTCCTCTTCCTCCTCCTCCTCTTCA
                      ____________________________________________________________
consensus             ACTACCGGCACTGCCATGGGAACAGCTGCCTCCTCTTCCTCTTCCTCCTCCTCCTCTTCA
 
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JMFN029E17+           GTGATCTTCCCTTGCTCTTCCAGGATTGATATTGAGAATTGGGATTTTATTATTTTAAAA
JMFF041L24+           GTGATCTTCCCTTGCTCTTCCAGGATTGATATTGAGAATTGGGATTTTATTATTTTAAAA
                      ____________________________________________________________
consensus             GTGATCTTCCCTTGCTCTTCCAGGATTGATATTGAGAATTGGGATTTTATTATTTTAAAA
 
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JMFN029E17+           TCGAAGTCAGCAATAACAGATCTGGTGAAGGGATGGAATCTATCTGAAACTTGAGTTGAG
JMFF041L24+           TCGAAGTCAGCAATAACAGATCTGGTGAAGGGATGGAATCTATCTGAAACTTGAGTTGAG
                      ____________________________________________________________
consensus             TCGAAGTCAGCAATAACAGATCTGGTGAAGGGATGGAATCTATCTGAAACTTGAGTTGAG
 
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JMFN029E17+           AGAGTACTTCCTTTTCTCTCTCTGATTTGTTTATATTTTTTGAGTTT             
JMFF041L24+           AGAGTACTTCCTTTTCTCTCTCTGATTTGTTTATATTTTTTGAGTTTTGACTTCCCAGTT
                      ____________________________________________________________
consensus             AGAGTACTTCCTTTTCTCTCTCTGATTTGTTTATATTTTTTGAGTTTTGACTTCCCAGTT