Contig 004621:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001J24Sequence569004621 (2)ref|XP_009603008.1|1e-68PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochond782007758 (6)ref|XP_006347139.1|6e-91PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochond
JMFF040I24Sequence606004621 (2)ref|XP_009603008.1|1e-76PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochond786007758 (6)ref|XP_004232796.1|4e-90PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochond

Alignment

This contig is upended


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JMFF040I24+                                                                 CCATTC
                      ____________________________________________________________
consensus                                                                   CCATTC
 
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JMFF001J24+                                          TTGCATCAATTTTGATACATTCAGCCTCA
JMFF040I24+           AAATTAGATCGACAGTATACTTTTTTGTTCTTTGCATCAATTTTGATACATTCAGCCTCA
                      ____________________________________________________________
consensus             AAATTAGATCGACAGTATACTTTTTTGTTCTTTGCATCAATTTTGATACATTCAGCCTCA
 
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JMFF001J24+           CAGTACTGCATATCTACATTTTTCTTTCTGATAATGTTACGAATTGGTTCAACAATGCTG
JMFF040I24+           CAGTACTGCATATCTACATTTTTCTTTCTGATAATGTTACGAATTGGTTCAACAATGCTG
                      ____________________________________________________________
consensus             CAGTACTGCATATCTACATTTTTCTTTCTGATAATGTTACGAATTGGTTCAACAATGCTG
 
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JMFF001J24+           CGACCTTCAACGGTGCCACATGTTACACTTGGCAGCAAGGGAGTAAATGCAAAGTAATTA
JMFF040I24+           CGACCTTCAACGGTGCCACATGTTACACTTGGCAGCAAGGGAGTAAATGCAAAGTAATTA
                      ____________________________________________________________
consensus             CGACCTTCAACGGTGCCACATGTTACACTTGGCAGCAAGGGAGTAAATGCAAAGTAATTA
 
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JMFF001J24+           CGCGGTGATATCACCTGAACATCATATGAGGGATCTTTCAGGTTCTTCAAGAAACTAGTT
JMFF040I24+           CGCGGTGATATCACCTGAACATCATATGAGGGATCTTTCAGGTTCTTCAAGAAACTAGTT
                      ____________________________________________________________
consensus             CGCGGTGATATCACCTGAACATCATATGAGGGATCTTTCAGGTTCTTCAAGAAACTAGTT
 
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JMFF001J24+           CCAGCCCAACCAGTTCCAAGTACTACCACTCTCTTTTTCTGGTGATTGACCTCGGTCAAA
JMFF040I24+           CCAGCCCAACCAGTTCCAAGTACTACCACTCTCTTTTTCTGGTGATTGACCTCGGTCAAA
                      ____________________________________________________________
consensus             CCAGCCCAACCAGTTCCAAGTACTACCACTCTCTTTTTCTGGTGATTGACCTCGGTCAAA
 
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JMFF001J24+           TCCCCAAGGTTATTGCTCTCATGTGGCTTTGTTGCCTCAGAGTATGCCACAAGGCTTCCA
JMFF040I24+           TCCCCAAGGTTATTGCTCTCATGTGGCTTTGTTGCCTCAGAGTATGCCACAAGGCTTCCA
                      ____________________________________________________________
consensus             TCCCCAAGGTTATTGCTCTCATGTGGCTTTGTTGCCTCAGAGTATGCCACAAGGCTTCCA
 
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JMFF001J24+           CCACTGACAGTGAAAACAATTAGAAGCTTAGAAAGCGAAGGATTTTCACGGAAGGTTCGA
JMFF040I24+           CCACTGACAGTGAAAACAATTAGAAGCTTAGAAAGCGAAGGATTTTCACGGAAGGTTCGA
                      ____________________________________________________________
consensus             CCACTGACAGTGAAAACAATTAGAAGCTTAGAAAGCGAAGGATTTTCACGGAAGGTTCGA
 
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JMFF001J24+           GCAAATCTCTGCATTTTTTTTCACTTCGAAAGCTGATCTCCACCACAACACAAAACGAAA
JMFF040I24+           GCAAATCTCTGCATTTTTTTTCACTTCGAAAGCTGATCTCCACCACAACACAAAACGAAA
                      ____________________________________________________________
consensus             GCAAATCTCTGCATTTTTTTTCACTTCGAAAGCTGATCTCCACCACAACACAAAACGAAA
 
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JMFF001J24+           TCTCTCTCCCCAACTTCAGATCACCTCTAAGAAGAAAGTACGAAAGCGAATCAATGGCGA
JMFF040I24+           TCTCTCTCCCCAACTTCAGATCACCTCTAAGAAGAAAGTACGAAAGCGAATCAATGGCGA
                      ____________________________________________________________
consensus             TCTCTCTCCCCAACTTCAGATCACCTCTAAGAAGAAAGTACGAAAGCGAATCAATGGCGA
 
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JMFF001J24+           GTCAAAACGGCTACACAGCGACAAAAAATGAGGCGTGCTTATTCTCGGTTTCTCACCTCC
JMFF040I24+           GTCAAAACGGCTACACAGCGACAAAAAATGAGGCGTGCTTATTCTCGGTTTCTCACCTCC
                      ____________________________________________________________
consensus             GTCAAAACGGCTACACAGCGACAAAAAATGAGGCGTGCTTATTCTCGGTTTCTCACCTCC