Contig 004618:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022N06Sequence722004618 (3)ref|XP_009592781.1|6e-68PREDICTED: uncharacterized protein LOC104089559 isoform X1 [Nicotiana tomentosi
JMFF040B17Sequence439004618 (3)ref|XP_010314287.1|9e-12PREDICTED: uncharacterized protein LOC101268364 isoform X2 [Solanum lycopersicu399004618 (3)ref|XP_010314287.1|6e-12PREDICTED: uncharacterized protein LOC101268364 isoform X2 [Solanum lycopersicu

Alignment

This contig is upended


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rJMFF022N06+                                                                   GCC
                      ____________________________________________________________
consensus                                                                      GCC
 
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rJMFF022N06+          TCACAGATCCCTGTTGCTGTAGGAGCTTCGGCTTATCAGGCAGTCTGCTTATACAAGGGC
                      ____________________________________________________________
consensus             TCACAGATCCCTGTTGCTGTAGGAGCTTCGGCTTATCAGGCAGTCTGCTTATACAAGGGC
 
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rJMFF022N06+          TGGAGGGTAGTCATGTCAAATGGTGAAGTCGCAACAAACTGGAAAGTGCTTCAGCTCGTT
                      ____________________________________________________________
consensus             TGGAGGGTAGTCATGTCAAATGGTGAAGTCGCAACAAACTGGAAAGTGCTTCAGCTCGTT
 
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rJMFF022N06+          CTTTACTGTTTCTTCGGGATTTTGGCTGGTGTAGTTGGTGGGTTGCTAGGTCTTGGAGGG
                      ____________________________________________________________
consensus             CTTTACTGTTTCTTCGGGATTTTGGCTGGTGTAGTTGGTGGGTTGCTAGGTCTTGGAGGG
 
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rJMFF022N06+          GGATTCATTTTGGGTCCATTATTTCTAGAGCTTGGAATTCCTCCCCAGGTATCAAGTGCC
                      ____________________________________________________________
consensus             GGATTCATTTTGGGTCCATTATTTCTAGAGCTTGGAATTCCTCCCCAGGTATCAAGTGCC
 
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rJMFF022N06+          ACTGCCACCTTCATAATGCTGTTTTCGTCATCAATGTCGGTCATACAATACTACCTTCTT
                      ____________________________________________________________
consensus             ACTGCCACCTTCATAATGCTGTTTTCGTCATCAATGTCGGTCATACAATACTACCTTCTT
 
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rJMFF022N06+          CACCGTTTCCCCGTACCTTATGCTCTCTATTTCGTTGCGGTGGCTACTATTGCTGCGTTG
                      ____________________________________________________________
consensus             CACCGTTTCCCCGTACCTTATGCTCTCTATTTCGTTGCGGTGGCTACTATTGCTGCGTTG
 
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rJMFF022N06+          GTGGGCCAACATGTGGTGCGAAAAATAATTAGTATAGTAGGGAGGGCATCCGTGATCGTC
rJMFF040B17+                                                     GGGCATCCGTGATCGTC
JMFF040B17-                                                      GGGCATCCGTGATCGTC
                      ____________________________________________________________
consensus             GTGGGCCAACATGTGGTGCGAAAAATAATTAGTATAGTAGGGAGGGCATCCGTGATCGTC
 
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rJMFF022N06+          TTTGTTTTGGCCTTCACGATCTTTCTGAGCGCAATATCATTAGGTGGCGTTGGCATCTTC
rJMFF040B17+          TTTGTTTTGGCCTTCACGATCTTTCTGAGCGCAATATCATTAGGTGGCGTTGGCATCTTC
JMFF040B17-           TTTGTTTTGGCCTTCACGATCTTTCTGAGCGCAATATCATTAGGTGGCGTTGGCATCTTC
                      ____________________________________________________________
consensus             TTTGTTTTGGCCTTCACGATCTTTCTGAGCGCAATATCATTAGGTGGCGTTGGCATCTTC
 
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rJMFF022N06+          GACACTATTAGGAAGATAGAGGCAGGAGAATATATGGGATTTGTTAACATCTGTGAAACT
rJMFF040B17+          GACACTATTAGGAAGATAGAGGCAGGAGAATATATGGGATTTGTTAACATCTGTGAAACT
JMFF040B17-           GACACTATTAGGAAGATAGAGGCAGGAGAATATATGGGATTTGTTAACATCTGTGAAACT
                      ____________________________________________________________
consensus             GACACTATTAGGAAGATAGAGGCAGGAGAATATATGGGATTTGTTAACATCTGTGAAACT
 
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rJMFF022N06+          ACTTACTAACACTGCTTCTACAGATTGTTCTTTTCCTCTTTTTGTTCAAGTTACTGTTAA
rJMFF040B17+          ACTTACTAACACTGCTTCTACAGATTGTTCTTTTCCTCTTTTTGTTCAAGTTACTGTTAA
JMFF040B17-           ACTTACTAACACTGCTTCTACAGATTGTTCTTTTCCTCTTTTTGTTCAAGTTACTGTTAA
                      ____________________________________________________________
consensus             ACTTACTAACACTGCTTCTACAGATTGTTCTTTTCCTCTTTTTGTTCAAGTTACTGTTAA
 
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rJMFF022N06+          TTCCACTGGAGAGAGTTTCTTCTTTATGCTTGTCACTCCTGTAATCTGACATGAAGGCTC
rJMFF040B17+          TTCCACTGGAGAGAGTTTCTTCTTTATGCTTGTCACTCCTGTAATCTGACATGAAGGCTC
JMFF040B17-           TTCCACTGGAGAGAGTTTCTTCTTTATGCTTGTCACTCCTGTAATCTGACATGAAGGCTC
                      ____________________________________________________________
consensus             TTCCACTGGAGAGAGTTTCTTCTTTATGCTTGTCACTCCTGTAATCTGACATGAAGGCTC
 
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rJMFF022N06+          TGTCCATAAACCATTGTTGTAAAGTTTGCCAGACATACAGTACTCTGAGAGATTCCAAG 
rJMFF040B17+          TGTCCATAAACCATTGTTGTAAAGTTTGCCAGACATACAGTACTCTGAGAGATTCCAAGA
JMFF040B17-           TGTCCATAAACCATTGTTGTAAAGTTTGCCAGACATACAGTACTCTGAGAGATTCCAAGA
                      ____________________________________________________________
consensus             TGTCCATAAACCATTGTTGTAAAGTTTGCCAGACATACAGTACTCTGAGAGATTCCAAGA
 
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rJMFF040B17+          TTTTTTTTTGTAAAAAAAATCTTTCTGGAACATGACCTTTGATCATGGTTCATGTTCTTG
JMFF040B17-           TTTTTTTTTGTAAAAAAAATCTTTCTGGAACATGACCTTTGATCATGGTTCATGTTCTTG
                      ____________________________________________________________
consensus             TTTTTTTTTGTAAAAAAAATCTTTCTGGAACATGACCTTTGATCATGGTTCATGTTCTTG
 
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rJMFF040B17+          TAAACTATTGGGACTAACTT                                        
JMFF040B17-           TAAACTATTGGGACTAACTTTGTCCCTATAATGCTTGTTGGATCAGTTTCAAAAAAAAAA
                      ____________________________________________________________
consensus             TAAACTATTGGGACTAACTTTGTCCCTATAATGCTTGTTGGATCAGTTTCAAAAAAAAAA