Contig 004617:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018D13Sequence497004617 (4)ref|XP_009631543.1|115PREDICTED: uncharacterized protein LOC104121292 [Nicotiana tomentosiformis]561004617 (4)ref|XP_009631543.1|115PREDICTED: uncharacterized protein LOC104121292 [Nicotiana tomentosiformis]
JMFF040A04Sequence582004617 (4)ref|XP_009631543.1|115PREDICTED: uncharacterized protein LOC104121292 [Nicotiana tomentosiformis]561004617 (4)ref|XP_009631543.1|115PREDICTED: uncharacterized protein LOC104121292 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMFF018D13+                            AACAAGGGAAGGGAGGATGCAGATGGAGAGCTACTATGGGGG
rJMFF040A04+                            AACAAGGGAAGGGAGGATGCAGATGGAGAGCTACTATGGGGG
JMFF018D13-                             AACAAGGGAAGGGAGGATGCAGATGGAGAGCTACTATGGGGG
JMFF040A04-                             AACAAGGGAAGGGAGGATGCAGATGGAGAGCTACTATGGGGG
                      ____________________________________________________________
consensus                               AACAAGGGAAGGGAGGATGCAGATGGAGAGCTACTATGGGGG
 
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rJMFF018D13+          AGGGGGTAATGAGGCTGTGGGGCCCCAGAGCATGAAGGATTTGAGAAGCTACAGCACCTC
rJMFF040A04+          AGGGGGTAATGAGGCTGTGGGGCCCCAGAGCATGAAGGATTTGAGAAGCTACAGCACCTC
JMFF018D13-           AGGGGGTAATGAGGCTGTGGGGCCCCAGAGCATGAAGGATTTGAGAAGCTACAGCACCTC
JMFF040A04-           AGGGGGTAATGAGGCTGTGGGGCCCCAGAGCATGAAGGATTTGAGAAGCTACAGCACCTC
                      ____________________________________________________________
consensus             AGGGGGTAATGAGGCTGTGGGGCCCCAGAGCATGAAGGATTTGAGAAGCTACAGCACCTC
 
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rJMFF018D13+          TTATGCTTACACTTCTTCATCCATGGAGGCTGCTCCCCAGTACAATAATAAAGAAGTGAG
rJMFF040A04+          TTATGCTTACACTTCTTCATCCATGGAGGCTGCTCCCCAGTACAATAATAAAGAAGTGAG
JMFF018D13-           TTATGCTTACACTTCTTCATCCATGGAGGCTGCTCCCCAGTACAATAATAAAGAAGTGAG
JMFF040A04-           TTATGCTTACACTTCTTCATCCATGGAGGCTGCTCCCCAGTACAATAATAAAGAAGTGAG
                      ____________________________________________________________
consensus             TTATGCTTACACTTCTTCATCCATGGAGGCTGCTCCCCAGTACAATAATAAAGAAGTGAG
 
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rJMFF018D13+          GATCAAGAAAAGCAAGAGCAGGGTTTCATCCAGCTTTGCTTCGAAAAGCTGGAGCTTTAA
rJMFF040A04+          GATCAAGAAAAGCAAGAGCAGGGTTTCATCCAGCTTTGCTTCGAAAAGCTGGAGCTTTAA
JMFF018D13-           GATCAAGAAAAGCAAGAGCAGGGTTTCATCCAGCTTTGCTTCGAAAAGCTGGAGCTTTAA
JMFF040A04-           GATCAAGAAAAGCAAGAGCAGGGTTTCATCCAGCTTTGCTTCGAAAAGCTGGAGCTTTAA
                      ____________________________________________________________
consensus             GATCAAGAAAAGCAAGAGCAGGGTTTCATCCAGCTTTGCTTCGAAAAGCTGGAGCTTTAA
 
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rJMFF018D13+          TGACCCAGAGATGCAGAGGAAGAAGAGGGTGGTTGGGTACAAGGCTTATGCTGTGGAAGG
rJMFF040A04+          TGACCCAGAGATGCAGAGGAAGAAGAGGGTGGTTGGGTACAAGGCTTATGCTGTGGAAGG
JMFF018D13-           TGACCCAGAGATGCAGAGGAAGAAGAGGGTGGTTGGGTACAAGGCTTATGCTGTGGAAGG
JMFF040A04-           TGACCCAGAGATGCAGAGGAAGAAGAGGGTGGTTGGGTACAAGGCTTATGCTGTGGAAGG
                      ____________________________________________________________
consensus             TGACCCAGAGATGCAGAGGAAGAAGAGGGTGGTTGGGTACAAGGCTTATGCTGTGGAAGG
 
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rJMFF018D13+          GAAGATGAAAGGCTCTTTCAGAAAGAGTTTCAGATGGATCAAGAACACCTGCAGCCATGT
rJMFF040A04+          GAAGATGAAAGGCTCTTTCAGAAAGAGTTTCAGATGGATCAAGAACACCTGCAGCCATGT
JMFF018D13-           GAAGATGAAAGGCTCTTTCAGAAAGAGTTTCAGATGGATCAAGAACACCTGCAGCCATGT
JMFF040A04-           GAAGATGAAAGGCTCTTTCAGAAAGAGTTTCAGATGGATCAAGAACACCTGCAGCCATGT
                      ____________________________________________________________
consensus             GAAGATGAAAGGCTCTTTCAGAAAGAGTTTCAGATGGATCAAGAACACCTGCAGCCATGT
 
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rJMFF018D13+          TGTTCATGGTTGGTGGTGATTGGTGATCATCATCTTCTGTTTCTTTTCTTATACTGCCTT
rJMFF040A04+          TGTTCATGGTTGGTGGTGATTGGTGATCATCATCTTCTGTTTCTTTTCTTATACTGCCTT
JMFF018D13-           TGTTCATGGTTGGTGGTGATTGGTGATCATCATCTTCTGTTTCTTTTCTTATACTGCCTT
JMFF040A04-           TGTTCATGGTTGGTGGTGATTGGTGATCATCATCTTCTGTTTCTTTTCTTATACTGCCTT
                      ____________________________________________________________
consensus             TGTTCATGGTTGGTGGTGATTGGTGATCATCATCTTCTGTTTCTTTTCTTATACTGCCTT
 
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rJMFF018D13+          AAATTCTTCAGTGTTCTTTTCCCCTTTGAGTATCCACTTATGGATCATGAAGATCCCTAA
rJMFF040A04+          AAATTCTTCAGTGTTCTTTTCCCCTTTGAGTATCCACTTATGGATCATGAAGATCCCTAA
JMFF018D13-           AAATTCTTCAGTGTTCTTTTCCCCTTTGAGTATCCACTTATGGATCATGAAGATCCCTAA
JMFF040A04-           AAATTCTTCAGTGTTCTTTTCCCCTTTGAGTATCCACTTATGGATCATGAAGATCCCTAA
                      ____________________________________________________________
consensus             AAATTCTTCAGTGTTCTTTTCCCCTTTGAGTATCCACTTATGGATCATGAAGATCCCTAA
 
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rJMFF018D13+          AAATTGGTGAATCTGCAAATGTAATGTAATGCAGGCTGGGTTGAAGTTCTTGGTTTTGAG
rJMFF040A04+          AAATTGGTGAATCTGCAAATGTAATGTAATGCAGGCTGGGTTGAAGTTCTTGGTTTTGAG
JMFF018D13-           AAATTGGTGAATCTGCAAATGTAATGTAATGCAGG                         
JMFF040A04-           AAATTGGTGAATCTGCAAATGTAATGTAATGCAGGCTGGGTTGAAGTTCTTGGTTTTGAG
                      ____________________________________________________________
consensus             AAATTGGTGAATCTGCAAATGTAATGTAATGCAGGCTGGGTTGAAGTTCTTGGTTTTGAG
 
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rJMFF018D13+          TATAGATCTGCATATGTATATCACACATAAATTATTATA                     
rJMFF040A04+          TATAGATCTGCATATGTATATCACACATAAATTATTATA                     
JMFF040A04-           TATAGATCTGCATATGTATATCACACATAAATTATTATATGTCATTTCTTGATGTTTTAA
                      ____________________________________________________________
consensus             TATAGATCTGCATATGTATATCACACATAAATTATTATATGTCATTTCTTGATGTTTTAA