Contig 004613:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039A09-                         ATTTTCTGGCACATATAAGGGCAAAAGCAGTAATGCCCATATGAA
rJMSF040F20-                      AAAATTTTCTGGCACATATAAGGGCAAAAGCAGTAATGCCCATATGAA
                      ____________________________________________________________
consensus                         AAAATTTTCTGGCACATATAAGGGCAAAAGCAGTAATGCCCATATGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN045I09+                               AAAACCACTGTGAAGGATTGATTCAGCAACAAAATGGAAT
rJMFF039A09-          ATGATTTAAAGAAAAGACAGAAAACCACTGTGAAGGATTGATTCAGCAACAAAATGGAAT
rJMSF040F20-          ATGATTTAAAGAAAAGACAGAAAACCACTGTGAAGGATTGATTCAGCAACAAAATGGAAT
                      ____________________________________________________________
consensus             ATGATTTAAAGAAAAGACAGAAAACCACTGTGAAGGATTGATTCAGCAACAAAATGGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN045I09+           TCTTACAGAAAAACTTTCAAGTGTTACCACTTGAAAATGCATTGAGGAATGCTGACATGT
rJMFF039A09-          TCTTACAGAAAAACTTTCAAGTGTTACCACTTGAAAATGCATTGAGGAATGCTGACATGT
rJMSF040F20-          TCTTACAGAAAAACTTTCAAGTGTTACCACTTGAAAATGCATTGAGGAATGCTGACATGT
                      ____________________________________________________________
consensus             TCTTACAGAAAAACTTTCAAGTGTTACCACTTGAAAATGCATTGAGGAATGCTGACATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN045I09+           ATGTTTATACTTCATCATGGAGAAACTGATCTCAAACCATGATATCGGAACATATATGAA
rJMFF039A09-          ATGTTTATACTTCATCATGGAGAAACTGATCTCAAACCATGATATCGGAACATATATGAA
rJMSF040F20-          ATGTTTATACTTCATCATGGAGAAACTGATCTCAAACCATGATATCGGAACATATATGAA
                      ____________________________________________________________
consensus             ATGTTTATACTTCATCATGGAGAAACTGATCTCAAACCATGATATCGGAACATATATGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN045I09+           CATTAAGCGATCAGATCAGGCCGTGCCATTCTCAGTCACCTCTTTAGATTTCTCGCTCGT
rJMFF039A09-          CATTAAGCGATCAGATCAGGCCGTGCCATTCTCAGTCACCTCTTTAGATTTCTCGCTCGT
rJMSF040F20-          CATTAAGCGATCAGATCAGGCCGTGCCATTCTCAGTCACCTCTTTAGATTTCTCGCTCGT
                      ____________________________________________________________
consensus             CATTAAGCGATCAGATCAGGCCGTGCCATTCTCAGTCACCTCTTTAGATTTCTCGCTCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN045I09+           ATCCAACTGGCTGAAGTTTCCCTTTTCCTGAACAGCTGAGTGTGGTGGTGCCTGCAATAG
rJMFF039A09-          ATCCAACTGGCTGAAGTTTCCCTTTTCCTGAACAGCTGAGTGTGGTGGTGCCTGCAATAG
rJMSF040F20-          ATCCAACTGGCTGAAGTTTCCCTTTTCCTGAACAGCTGAGTGTGGTGGTGCCTGCAATAG
                      ____________________________________________________________
consensus             ATCCAACTGGCTGAAGTTTCCCTTTTCCTGAACAGCTGAGTGTGGTGGTGCCTGCAATAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN045I09+           AGCTTATGCTCATGTGCGACATAATTTGATGGACTGATCACACAGCCGCCGTGACTGCAC
rJMFF039A09-          AGCTTATGCTCATGTGCGACATAATTTGATGGACTGATCACACAGCCGCCGTGACTGCAC
rJMSF040F20-          AGCTTATGCTCATGTGCGACATAATTTGATGGACTGATCACACAGCCGCCGTGACTGCAC
                      ____________________________________________________________
consensus             AGCTTATGCTCATGTGCGACATAATTTGATGGACTGATCACACAGCCGCCGTGACTGCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN045I09+           TTGAAGCAAGCCTTGTGGTACGATGTTCCATCAACCGCTACCTTTTCAATGGGGTAAACT
rJMFF039A09-          TTGAAGCAAGCCTTGTGGTACGATGTTCCATCAACCGCTACCTTTTCAATGGGGTAAACT
rJMSF040F20-          TTGAAGCAAGCCTTGTGGTACGATGTTCCATCAACCGCTACCTTTTCAATGGGGTAAACT
                      ____________________________________________________________
consensus             TTGAAGCAAGCCTTGTGGTACGATGTTCCATCAACCGCTACCTTTTCAATGGGGTAAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN045I09+           GTTTTCTTGCAAGCAACACATTTATCTTGAGTTCCCACAAACAGGCTTGAAACTTTGCTG
rJMFF039A09-          GTTTTCTTGCAAGCAACACATTTATCTTGAGTTCCCACAAACAGGCTTGAAACTTTGCTG
rJMSF040F20-          GTTTTCTTGCAAGCAACACATTTATCTTGAGTTCCCACAAACAGGCTTGAAACTTTGCTG
                      ____________________________________________________________
consensus             GTTTTCTTGCAAGCAACACATTTATCTTGAGTTCCCACAAACAGGCTTGAAACTTTGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN045I09+           CTTGTGTGTCCCTGATCTGCAGCTCTTTCCCTCACCGTTTTTGGAGCCCCT         
rJMFF039A09-          CTTGTGTGTCCCTGATCTGCAGCTCTTTCCCTCACCGTTTTTGGAGCCCCTTCAACTCTT
rJMSF040F20-          CTTGTGTGTCCCTGATCTGCAGCTCTTTCCCTCACCGTTTTTGGAGCCCCTGGCAAGAAG
                      ____________________________________________________________
consensus             CTTGTGTGTCCCTGATCTGCAGCTCTTTCCCTCACCGTTTTTGGAGCCCCTTGCACTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039A09-          ATCCAAGCTACTAGTCATTTTGAAAAGTTGATCAAAGTGTGGTTTGCAATATAAAACTCC
rJMSF040F20-          CTCAGA--------TAATGTTGAAGTGGAAAGTGAAATGTGCTACAAAAGAT----GCCA
                      ____________________________________________________________
consensus             CTCCGAGCTACTAGTCATTTTGAAGTGTTGATTGAAGTGTGGTTTGCAATATAAAAGTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039A09-          TTCGAAGGAGTTGTAATTGCTGAGCTT                                 
rJMSF040F20-          TCCACCAAATTTGGAAAATCAGAAATTGTCGTAACAGCTTATATCTGAGTGCAAAGCTTT
                      ____________________________________________________________
consensus             TTCGCCGGATTTGTAATTTCTGAGCTTGTCGTAACAGCTTATATCTGAGTGCAAAGCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040F20-          AACTCCGTATTCAATACTGCTTGATTGCATTGTATACAGTTCACTCTAAAAATGCAAAAC
                      ____________________________________________________________
consensus             AACTCCGTATTCAATACTGCTTGATTGCATTGTATACAGTTCACTCTAAAAATGCAAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040F20-          TTGAACTACAATACTCTATAGTATCCTGTTAATAACATTGGTCTTGATCATTCTTTATTT
                      ____________________________________________________________
consensus             TTGAACTACAATACTCTATAGTATCCTGTTAATAACATTGGTCTTGATCATTCTTTATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040F20-          GTACCAAATGCTTTCAACACTTAATTATTGAGTCACTCATCAATAGCTCCTCTGCCATCA
JMSF040F20+                              CTTAATTATTGAGTCACTCATCAATAGCTCCTCTGCCATCA
                      ____________________________________________________________
consensus             GTACCAAATGCTTTCAACACTTAATTATTGAGTCACTCATCAATAGCTCCTCTGCCATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040F20-          ATTCAAA                                                     
JMSF040F20+           ATTCAAATTCCGATAAGGCAAATTGCACAAGCCCAAAAGTTAAAGCAGAACCACTTGACA
                      ____________________________________________________________
consensus             ATTCAAATTCCGATAAGGCAAATTGCACAAGCCCAAAAGTTAAAGCAGAACCACTTGACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF040F20+           TTGAATAAACCAGCAAATATTGACAAATATTCTTCTCCTTCTAACCTAGGTTGTCGCAAT
JMFF039A09+            TGAATAAACCAGCAAATATTGACAAATATTCTTCTCCTTCTAACCTAGGTTGTCGCAAT
                      ____________________________________________________________
consensus             TTGAATAAACCAGCAAATATTGACAAATATTCTTCTCCTTCTAACCTAGGTTGTCGCAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF040F20+           CCCAGATCTAAGGAAACGCAGATCGAAACGTCGGAGGTGTCGTTGCCACTGCTCGCCGGC
JMFF039A09+           CCCAGATCTAAGGAAACGCAGATCGAAACGTCGGAGGTGTCGTTGCCACTGCTCGCCGGC
                      ____________________________________________________________
consensus             CCCAGATCTAAGGAAACGCAGATCGAAACGTCGGAGGTGTCGTTGCCACTGCTCGCCGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF040F20+           TCGCCGCCAACGTGCTTGAAGCCGCAGCTTGCCGTCGCTGGTCGTCGCCGATGGTGGTCG
JMFF039A09+           TCGCCGCCAACGTGCTTGAAGCCGCAGCTTGCCGTCGCTGGTCGTCGCCGATGGTGGTCG
                      ____________________________________________________________
consensus             TCGCCGCCAACGTGCTTGAAGCCGCAGCTTGCCGTCGCTGGTCGTCGCCGATGGTGGTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF040F20+           CCGCCGATGGTCTTCGCCGCTGTTCACATCACCGCCATCACCTTCAAATCTTCAATCGCT
JMFF039A09+           CCGCCGATGGTCTTCGCCGCTGTTCACATCACCGCCATCACCTTCAAATCTTCAATCGCT
                      ____________________________________________________________
consensus             CCGCCGATGGTCTTCGCCGCTGTTCACATCACCGCCATCACCTTCAAATCTTCAATCGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF040F20+           CTTCAGGTCGAAAGAATTTATGGAGAGTATCTGATAGATCTTTAGGGGTTTCTTTCTTCA
JMFF039A09+           CTTCAGGTCGAAAGAATTTATGGAGAGTATCTGATAGATCTTTAGGGGTTTCTTTCTTCA
                      ____________________________________________________________
consensus             CTTCAGGTCGAAAGAATTTATGGAGAGTATCTGATAGATCTTTAGGGGTTTCTTTCTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF040F20+           GGTCGGAAGGGTCTGTGGAGAGTAGTAAAACTGATAGATCTTTAGGGGTTTCTTTCTTCA
JMFF039A09+           GGTCGGAAGGGTCTGTGGAGAGTAGTAAAACTGATAGATCTTTAGGGGTTTCTTTCTTCA
                      ____________________________________________________________
consensus             GGTCGGAAGGGTCTGTGGAGAGTAGTAAAACTGATAGATCTTTAGGGGTTTCTTTCTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF040F20+           GGTCGGAAGGGTTTGTGGAGAGTACAAC                                
JMFF039A09+           GGTCGGAAGGGTTTGTGGAGAGTACAACTGATAGATCTTTAGGGGTTTCTTTCTTCAGGT
                      ____________________________________________________________
consensus             GGTCGGAAGGGTTTGTGGAGAGTACAACTGATAGATCTTTAGGGGTTTCTTTCTTCAGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039A09+           CGAAAGGGTTTGTAGAGAGTAAAACTGATAAGAATTGAGACGAAACCCCTAATAATTGGC
                      ____________________________________________________________
consensus             CGAAAGGGTTTGTAGAGAGTAAAACTGATAAGAATTGAGACGAAACCCCTAATAATTGGC