Contig 004612:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038L08Sequence525004612 (2)ref|XP_009774096.1|3e-25PREDICTED: upstream activation factor subunit spp27-like isoform X2 [Nicotiana 719003865 (5)ref|XP_009774097.1|1e-73PREDICTED: upstream activation factor subunit spp27-like isoform X3 [Nicotiana
JMSF009A16Sequence226004612 (2)ref|XP_006346439.1|1e-09PREDICTED: upstream activation factor subunit spp27-like isoform X2 [Solanum tu755003865 (5)ref|XP_009774097.1|5e-85PREDICTED: upstream activation factor subunit spp27-like isoform X3 [Nicotiana

Alignment

This contig is upended


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JMFF038L08+ TGAAGTTGTGGAGAAAGGGCACATGGTTTGTTAAAGCCTTTGCCT
                      ____________________________________________________________
consensus TGAAGTTGTGGAGAAAGGGCACATGGTTTGTTAAAGCCTTTGCCT
 
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JMFF038L08+ CTTTTCTTATCATCTTTCTCCTTCGTGTTAGACTTTGCTTTCTGGGTGCTCTTTTCGTCA
                      ____________________________________________________________
consensus CTTTTCTTATCATCTTTCTCCTTCGTGTTAGACTTTGCTTTCTGGGTGCTCTTTTCGTCA
 
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JMFF038L08+ GTATCTTCTTCCTCTTTCTCATCTTGGTCATCAATTTCTTCTTCTTTAACGGTGCCCTCT
                      ____________________________________________________________
consensus GTATCTTCTTCCTCTTTCTCATCTTGGTCATCAATTTCTTCTTCTTTAACGGTGCCCTCT
 
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JMFF038L08+ TTTTGGGAATCGAGATTCTCGTTCTTTTCTTGCTTCACGTTCTCCGAGTCATCGGGTCCC
                      ____________________________________________________________
consensus TTTTGGGAATCGAGATTCTCGTTCTTTTCTTGCTTCACGTTCTCCGAGTCATCGGGTCCC
 
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JMFF038L08+ CGCTGTACTTTGTTGTTTTGAGGTGTTACAACATGGGTCTGGAGGAAAAGGTCGATTTGG
                      ____________________________________________________________
consensus CGCTGTACTTTGTTGTTTTGAGGTGTTACAACATGGGTCTGGAGGAAAAGGTCGATTTGG
 
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JMSF009A16+ CTGATGAAGGCCTTCCGGTCTAGCAAACAAACACCCAGTTGCTCCTCGAGCCGCCGC
JMFF038L08+ TCCCTGATGAAGGCCTTCCGGTCTAGCAAACAAACACCCAGTTGCTCCTCGAGCCGCCGC
                      ____________________________________________________________
consensus TCCCTGATGAAGGCCTTCCGGTCTAGCAAACAAACACCCAGTTGCTCCTCGAGCCGCCGC
 
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JMSF009A16+ CGGACGCTGGCGGCGGTGGCGGTCTCGAGGTTAGCGTCCCGGAGAATATCCCAGAGCCGG
JMFF038L08+ CGGACGCTGGCGGCGGTGGCGGTCTCGAGGTTAGCGTCCCGGAGAATATCCCAGAGCCGG
                      ____________________________________________________________
consensus CGGACGCTGGCGGCGGTGGCGGTCTCGAGGTTAGCGTCCCGGAGAATATCCCAGAGCCGG
 
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JMSF009A16+ CCCACCAACTCGGAGTCCGACACCATTTTTCAGACTTGGGCTGGTTAGACCGGTAGAGTG
JMFF038L08+ CCCACCAACTCGGAGTCCGACACCATTTTTCAGACTTGGGCTGGTTAGACCGGTAGAGTG
                      ____________________________________________________________
consensus CCCACCAACTCGGAGTCCGACACCATTTTTCAGACTTGGGCTGGTTAGACCGGTAGAGTG
 
. : . : . : . : . : . :
JMSF009A16+ GAGGACTGCATGCAGATTGGCTATACCAGAAGTCAATCGGAGTCGAAT
JMFF038L08+ GAGGACTGCATGCAGATTGGCTATACCAGAAGTCAATCGGAGTCGAATGGTTTCTTCCCC
                      ____________________________________________________________
consensus GAGGACTGCATGCAGATTGGCTATACCAGAAGTCAATCGGAGTCGAATGGTTTCTTCCCC