Contig 004592:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034D18Sequence556004592 (4)ref|XP_004238720.1|81.3PREDICTED: uncharacterized protein LOC101267602 [Solanum lycopersicum]575004592 (4)ref|XP_004238720.1|81.3PREDICTED: uncharacterized protein LOC101267602 [Solanum lycopersicum]
JMSF025E16Sequence636004592 (4)ref|XP_006355928.1|178PREDICTED: uncharacterized protein LOC102600516 [Solanum tuberosum]
JMSF029B15Sequence683004592 (4)ref|XP_006355928.1|190PREDICTED: uncharacterized protein LOC102600516 [Solanum tuberosum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029B15+                                               GTCTAGATTCCCTGCTTTCAGTCA
                      ____________________________________________________________
consensus                                                 GTCTAGATTCCCTGCTTTCAGTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029B15+           TCCGCTGTCTAGAATCCCTGCCCTCAAGCACACGCTGTCTAGAATCCCATGTATCTGGAT
JMSF025E16+                                  TCAAGCACACGCTGTCTAGAATCCCATGTATCTGGAT
                      ____________________________________________________________
consensus             TCCGCTGTCTAGAATCCCTGCCCTCAAGCACACGCTGTCTAGAATCCCATGTATCTGGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029B15+           AACGATGTCTAGTTTCCTTTGGCTCAGGCATACGGTGCTGTGTATTGGTTGGTGTTACTG
JMSF025E16+           AACGATGTCTAGTTTCCTTTGGCTCAGGCATACGGTGCTGTGTATTGGTTGGTGTTACTG
                      ____________________________________________________________
consensus             AACGATGTCTAGTTTCCTTTGGCTCAGGCATACGGTGCTGTGTATTGGTTGGTGTTACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029B15+           AAGATTGTGCTGATCTTGACAGCATACTGCGCAGGTCCACACCAGTCTGCTGGCCACTAC
JMSF025E16+           AAGATTGTGCTGATCTTGACAGCATACTGCGCAGGTCCACACCAGTCTGCTGGCCACTAC
                      ____________________________________________________________
consensus             AAGATTGTGCTGATCTTGACAGCATACTGCGCAGGTCCACACCAGTCTGCTGGCCACTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029B15+           TTTGACTTCTTTTCATCACAGATTTCCGCATAATTTTGAATCGAAGGTCATCTTTATCAA
JMSF025E16+           TTTGACTTCTTTTCATCACAGATTTCCGCATAATTTTGAATCGAAGGTCATCTTTATCAA
                      ____________________________________________________________
consensus             TTTGACTTCTTTTCATCACAGATTTCCGCATAATTTTGAATCGAAGGTCATCTTTATCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029B15+           GCCTTGCATCATCAACACCACTAGAGGCACTACTGCCCCATCCATTGCCATCTCCCCGCT
JMSF025E16+           GCCTTGCATCATCAACACCACTAGAGGCACTACTGCCCCATCCATTGCCATCTCCCCGCT
                      ____________________________________________________________
consensus             GCCTTGCATCATCAACACCACTAGAGGCACTACTGCCCCATCCATTGCCATCTCCCCGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029B15+           GACGTTTACTACTGAGTTGCGAAGTAGAATCCACAGCAGCTCCAAGCCTATCTCTAACTG
JMSF025E16+           GACGTTTACTACTGAGTTGCGAAGTAGAATCCACAGCAGCTCCAAGCCTATCTCTAACTG
rJMFF034D18-            CGTTTACTACTGAGTTGCGAAGTAGAATCCACAGCAGCTCCAAGCCTATCTCTAACTG
JMFF034D18+             CGTTTACTACTGAGTTGCGAAGTAGAATCCACAGCAGCTCCAAGCCTATCTCTAACTG
                      ____________________________________________________________
consensus             GACGTTTACTACTGAGTTGCGAAGTAGAATCCACAGCAGCTCCAAGCCTATCTCTAACTG
 
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JMSF029B15+           ACCGTTTATTCCCAGCTGCCGGCTGCGAATCATTAAACGAAAAATCTATCGAAGACGCTG
JMSF025E16+           ACCGTTTATTCCCAGCTGCCGGCTGCGAATCATTAAACGAAAAATCTATCGAAGACGCTG
rJMFF034D18-          ACCGTTTATTCCCAGCTGCCGGCTGCGAATCATTAAACGAAAAATCTATCGAAGACGCTG
JMFF034D18+           ACCGTTTATTCCCAGCTGCCGGCTGCGAATCATTAAACGAAAAATCTATCGAAGACGCTG
                      ____________________________________________________________
consensus             ACCGTTTATTCCCAGCTGCCGGCTGCGAATCATTAAACGAAAAATCTATCGAAGACGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029B15+           CTTTCTTTACCACCTGGCCACTGCGTCCTAGGGTTATGGTGACTCGTGATGGAGGCTCCG
JMSF025E16+           CTTTCTTTACCACCTGGCCACTGCGTCCTAGGGTTATGGTGACTCGTGATGGAGGCTCCG
rJMFF034D18-          CTTTCTTTACCACCTGGCCACTGCGTCCTAGGGTTATGGTGACTCGTGATGGAGGCTCCG
JMFF034D18+           CTTTCTTTACCACCTGGCCACTGCGTCCTAGGGTTATGGTGACTCGTGATGGAGGCTCCG
                      ____________________________________________________________
consensus             CTTTCTTTACCACCTGGCCACTGCGTCCTAGGGTTATGGTGACTCGTGATGGAGGCTCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029B15+           CCATTTTGACCATTCAGAAACTCCAAAACCCTATCGCACCAATCAACTGTATAGCAATAT
JMSF025E16+           CCATTTTGACCATTCAGAAACTCCAAAACCCTATCGCACCAATCAACTGTATAGCAATAT
rJMFF034D18-          CCATTTTGACCATTCAGAAACTCCAAAACCCTATCGCACCAATCAACTGTATAGCAATAT
JMFF034D18+           CCATTTTGACCATTCAGAAACTCCAAAACCCTATCGCACCAATCAACTGTATAGCAATAT
                      ____________________________________________________________
consensus             CCATTTTGACCATTCAGAAACTCCAAAACCCTATCGCACCAATCAACTGTATAGCAATAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029B15+           ACGATATTTGGAGCATCGGAATCACAAGAAATCAGTATAAATCATCGTATTAGATTTCGT
JMSF025E16+           ACGATATTTGGAGCATCGGAATCACAAGAAATCAGTATAAATCATCGTATTAGATTTCGT
rJMFF034D18-          ACGATATTTGGAGCATCGGAATCACAAGAAATCAGTATAAATCATCGTATTAGATTTCGT
JMFF034D18+           ACGATATTTGGAGCATCGGAATCACAAGAAATCAGTATAAATCATCGTATTAGATTTCGT
                      ____________________________________________________________
consensus             ACGATATTTGGAGCATCGGAATCACAAGAAATCAGTATAAATCATCGTATTAGATTTCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029B15+           ATTCCTTGCTCGCAATTTTGTACGGTATACGACTCATGAATCGCTCAACCAGTCCTCCC 
JMSF025E16+           ATTCCTTGCTCGCAATTTTGTACGGTATACGACTCATGAATCGCTCAACCAGTCCTCCC 
rJMFF034D18-          ATTCCTTGCTCGCAATTTTGTACGGTATACGACTCATGAATCGCTCAACCAGTCCTCCC 
JMFF034D18+           ATTCCTTGCTCGCAATTTTGTACGGTATACGACTCATGAATCGCTCAACCAGTCCTCCCA
                      ____________________________________________________________
consensus             ATTCCTTGCTCGCAATTTTGTACGGTATACGACTCATGAATCGCTCAACCAGTCCTCCCA