| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF034A05 | Sequence | 561 | 004590 (5) | ref|XP_009784185.1| | 8e-65 | PREDICTED: protein phosphatase 2C 57 [Nicotiana sylvestris] | 747 | 004590 (5) | ref|XP_002276645.1| | 9e-96 | PREDICTED: protein phosphatase 2C 57 [Vitis vinifera] |
| JMFS008F04 | Sequence | 622 | 004590 (5) | gb|AGJ76609.1| | 9e-114 | protein phosphatase 2C [Ilex paraguariensis] | |||||
| JMSF035C22 | Sequence | 661 | 017887 | ref|XP_009784185.1| | 6e-90 | PREDICTED: protein phosphatase 2C 57 [Nicotiana sylvestris] | 662 | 004590 (5) | ref|XP_002276645.1| | 1e-101 | PREDICTED: protein phosphatase 2C 57 [Vitis vinifera] |
| JMSF043L16 | Sequence | 782 | 004590 (5) | ref|XP_009784185.1| | 4e-110 | PREDICTED: protein phosphatase 2C 57 [Nicotiana sylvestris] | 805 | 019417 | ref|XP_002276645.1| | 1e-68 | PREDICTED: protein phosphatase 2C 57 [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
rJMFF034A05- AAACGCTTCATTTGTATTCT
____________________________________________________________
consensus AAACGCTTCATTTGTATTCT
. : . : . : . : . : . :
rJMFF034A05- TAAGTTCCTAGGCCTGTGACGCGATCCTAATATCCCGGTGCCTATAACAACAGTAATATG
____________________________________________________________
consensus TAAGTTCCTAGGCCTGTGACGCGATCCTAATATCCCGGTGCCTATAACAACAGTAATATG
. : . : . : . : . : . :
rJMSF035C22- AGGCAAATATACAAACATTTGATGATC
rJMFF034A05- AATATTATATTGACATGAGCAACTGAAAATGTAAGGCAAATATACAAACATTTGATGATC
____________________________________________________________
consensus AATATTATATTGACATGAGCAACTGAAAATGTAAGGCAAATATACAAACATTTGATGATC
. : . : . : . : . : . :
rJMSF035C22- TATGTTTGTTCCTTTCAGCCGATAACTATATACAAATTTTAGCACACATCATTATGCTCA
rJMFF034A05- TATGTTTGTTCCTTTCAGCCGATAACTATATACAAATTTTAGCACACATCATTATGCTCA
____________________________________________________________
consensus TATGTTTGTTCCTTTCAGCCGATAACTATATACAAATTTTAGCACACATCATTATGCTCA
. : . : . : . : . : . :
rJMSF035C22- AAAGGAAAGTTGGGTTGACATCCATATTCCAACTGACACAATCCCCATCGTTGCTAAAGC
rJMFF034A05- AAAGGAAAGTTGGGTTGACATCCATATTCCAACTGACACAATCCCCATCGTTGCTAAAGC
____________________________________________________________
consensus AAAGGAAAGTTGGGTTGACATCCATATTCCAACTGACACAATCCCCATCGTTGCTAAAGC
. : . : . : . : . : . :
rJMSF035C22- TTGAACCAATTCCAAGAACACATTCTGCTGTTGCACAGGCAAGTTTCGCCAATCTGTCCG
rJMFF034A05- TTGAACCAATTCCAAGAACACATTCTGCTGTTGCACAGGCAAGTTTCGCCAATCTGTCCG
____________________________________________________________
consensus TTGAACCAATTCCAAGAACACATTCTGCTGTTGCACAGGCAAGTTTCGCCAATCTGTCCG
. : . : . : . : . : . :
rJMSF035C22- CCCCAAATCAGCAACGATAATGCTAACGTTATCTTGTGATCGCTGATAATCCAGGGCCAT
rJMFF034A05- CCCCAAATCAGCAACGATAATGCTAACGTTATCTTGTGATCGCTGATAATCCAGGGCCAT
JMFS008F04+ TAATCCAGGGCCAT
____________________________________________________________
consensus CCCCAAATCAGCAACGATAATGCTAACGTTATCTTGTGATCGCTGATAATCCAGGGCCAT
. : . : . : . : . : . :
rJMSF035C22- TCTTGCAAGGGCTTCGCAAGCTATCTGAACATCCCCGTGTTCCCGAAGTTGATTCCTAAC
rJMFF034A05- TCTTGCAAGGGCTTCGCAAGCTATCTGAACATCCCCGTGTTCCCGAAGTTGATTCCTAAC
JMFS008F04+ TCTTGCAAGGGCTTCGCAAGCTATCTGAACATCNCCGTGTTCCCGAAGTTGATTCCTAAC
____________________________________________________________
consensus TCTTGCAAGGGCTTCGCAAGCTATCTGAACATCCCCGTGTTCCCGAAGTTGATTCCTAAC
. : . : . : . : . : . :
rJMSF035C22- CAAAGTAACTGCATCTGAGCTGCTAACGTAATCCCACAATCCATCAGATGCTAGTACTAG
rJMFF034A05- CAAAGTAACTGCATCTGAGCTGCTAACGTAATCCCACAATCCATCAGATGCTAGTACTAG
JMFS008F04+ CAAAGTAACTGCATCTGAGCTGCTAACGTAATCCCACAATCCATCAGATGCTAGTACTAG
____________________________________________________________
consensus CAAAGTAACTGCATCTGAGCTGCTAACGTAATCCCACAATCCATCAGATGCTAGTACTAG
. : . : . : . : . : . :
rJMSF035C22- AAATTCTGCATCTGATCCGAGAGTAACTTGAGAAACATCTGGAAATGCAGTAACCAAGTC
rJMFF034A05- AAATTCTGCATCTGATCCGAGAGTAACTTGAGAAACATCTGGAAATGCAGTAACCAAGTC
JMFS008F04+ AAATTCTGCATCTGATCCGAGAGTAACTTGAGAAACATCTGGAAATGCAGTAACCAAGTC
____________________________________________________________
consensus AAATTCTGCATCTGATCCGAGAGTAACTTGAGAAACATCTGGAAATGCAGTAACCAAGTC
. : . : . : . : . : . :
rJMSF035C22- ACCGCGAAATGTCACCCGGGAAGCAAACTTTTGAGACCACCTGCCTTCCTCGACACCCTT
rJMFF034A05- ACCGCGAAATGTCACCCGGGAAGCAAACTTTTGAGACCACCTGCCTTCCTCGACACCCTT
JMFS008F04+ ACCGCGAAATGTCACCCGGGAAGCAAACTTTTGAGACCACCTGCCTTCCTCGACACCCTT
____________________________________________________________
consensus ACCGCGAAATGTCACCCGGGAAGCAAACTTTTGAGACCACCTGCCTTCCTCGACACCCTT
. : . : . : . : . : . :
rJMSF035C22- CTCCAGCATC
rJMFF034A05- CTCCAGCATCTCAATCTTCTTGTTCTTGAATCGCGTATCCCCAAAAGCACGGGATACAGA
JMFS008F04+ CTCCAGCATCTCAATCTTCTTGTTCTTGAATCGCGTATCCCCAAAAGCACGGGATACAGA
JMSF043L16+ TATCCCCAAAAGCACGGGATACAGA
____________________________________________________________
consensus CTCCAGCATCTCAATCTTCTTGTTCTTGAATCGCGTATCCCCAAAAGCACGGGATACAGA
. : . : . : . : . : . :
rJMFF034A05- AATATCTCCACAGATTCGTCCATTTACAATCCATCCACCTGCTTCCCTAACTCGTCTAAT
JMFS008F04+ AATATCTCCACAGATTCGTCCATTTACAATCCATCCACCTGCTTCCCTAACTCGTCTAAT
JMSF043L16+ AATATCTCCACAGATTCGTCCATTTACAATCCATCCACCTGCTTCCCTAACTCGTCTAAT
____________________________________________________________
consensus AATATCTCCACAGATTCGTCCATTTACAATCCATCCACCTGCTTCCCTAACTCGTCTAAT
. : . : . : . : . : . :
rJMFF034A05- TTCATCC
JMFS008F04+ TTCATCCAGAGAAACTTTGTTACTCCCATAGGGTCGGTGAGAGTTAGTCAATGCTTCTGC
JMSF043L16+ TTCATCCAGAGAAACTTTGTTACTCCCATAGGGTCGGTGAGAGTTAGTCAATGCTTCTGC
____________________________________________________________
consensus TTCATCCAGAGAAACTTTGTTACTCCCATAGGGTCGGTGAGAGTTAGTCAATGCTTCTGC
. : . : . : . : . : . :
JMFS008F04+ TTTCCCAGACCGTGAGAGAACCACGCACGAATCACCAAGATGTGATATGAAAAGTGTGTC
JMSF043L16+ TTTCCCAGACCGTGAGAGAACCACGCACGAATCACCAAGATGTGATATGAAAAGTGTGTC
____________________________________________________________
consensus TTTCCCAGACCGTGAGAGAACCACGCACGAATCACCAAGATGTGATATGAAAAGTGTGTC
. : . : . : . : . : . :
JMFS008F04+ TTTCCCAACAAATATAACTGTAGCGGTTGCTCCAGATTCAATTTCCTGCCCGCTTGTCTC
JMSF043L16+ TTTCCCAACAAATATAACTGTAGCGGTTGCTCCAGATTCAATTTCCTGCCCGCTTGTCTC
____________________________________________________________
consensus TTTCCCAACAAATATAACTGTAGCGGTTGCTCCAGATTCAATTTCCTGCCCGCTTGTCTC
. : . : . : . : . : . :
JMFS008F04+ AAGCC
JMSF043L16+ AAGCCTTTACAAAATGAAATAGCAGCAATTCACAAGTTTCGCATCAACTGTTTCAAAGGC
JMFF034A05+ CAATTCACAAGTTTCGCATCAACTGTTTCAAAGGC
____________________________________________________________
consensus AAGCCTTTACAAAATGAAATAGCAGCAATTCACAAGTTTCGCATCAACTGTTTCAAAGGC
. : . : . : . : . : . :
JMSF043L16+ CTCTTGCAGCGCTTTCCTTATCGCATTCAGGTCCTTTCCATTCAACAACAACCCACCTTG
JMFF034A05+ CTCTTGCAGCGCTTTCCTTATCGCATTCAGGTCCTTTCCATTCAACAACAACCCACCTTG
____________________________________________________________
consensus CTCTTGCAGCGCTTTCCTTATCGCATTCAGGTCCTTTCCATTCAACAACAACCCACCTTG
. : . : . : . : . : . :
JMSF043L16+ CAATGCTCTAACACATTCCCTATATAGCTCCTCCCTGAGGAATCTGGCAGAAGAAAACCC
JMFF034A05+ CAATGCTCTAACACATTCCCTATATAGCTCCTCCCTGAGGAATCTGGCAGAAGAAAACCC
____________________________________________________________
consensus CAATGCTCTAACACATTCCCTATATAGCTCCTCCCTGAGGAATCTGGCAGAAGAAAACCC
. : . : . : . : . : . :
JMSF043L16+ AGCATGGCCGTCAAAAACCGCGGCATAAGAGAAGCCATCAAGATCATCGGACTGAACTAT
JMFF034A05+ AGCATGGCCGTCAAAAACCGCGGCATAAGAGAAGCCATCAAGATCATCGGACTGAACTAT
____________________________________________________________
consensus AGCATGGCCGTCAAAAACCGCGGCATAAGAGAAGCCATCAAGATCATCGGACTGAACTAT
. : . : . : . : . : . :
JMSF043L16+ AACGGCGGCGTCTTCCATCTCCTCCCGCGGACCCTGTAGCAGCGACGAACCCCATCTGAC
JMFF034A05+ AACGGCGGCGTCTTCCATCTCCTCCCGCGGACCCTGTAGCAGCGACGAACCCCATCTGAC
____________________________________________________________
consensus AACGGCGGCGTCTTCCATCTCCTCCCGCGGACCCTGTAGCAGCGACGAACCCCATCTGAC
. : . : . : . : . : . :
JMSF043L16+ ACCGGAAACGCCGGAAACCGAAGCGGGGGAATCGATCGCAATGGCGGAGCAGCATCTCCC
JMFF034A05+ ACCGGAAACGCCGGAAACCGAAGCGGGGGAATCGATCGCAATGGCGGAGCAGCATCTCCC
____________________________________________________________
consensus ACCGGAAACGCCGGAAACCGAAGCGGGGGAATCGATCGCAATGGCGGAGCAGCATCTCCC
. : . : . : . : . : . :
JMSF043L16+ GGTTCGTCGTCGCCCTCTATTACCCTTTACTATAATGCTTTTCTTGGTGCCTACAGTGTA
JMFF034A05+ GGTTCGTCGTCGCCCTCTATTACCCTTTACTATAATGCTTTTCTTGGTGCCTACAGTGTA
____________________________________________________________
consensus GGTTCGTCGTCGCCCTCTATTACCCTTTACTATAATGCTTTTCTTGGTGCCTACAGTGTA
. : . : . : . : . : . :
JMSF043L16+ TGCATAGTTAGAGTAGAGTCTGGTTAGCAGAGATTTTTGAATCTGGGGGCTAAGCAGGGC
JMFF034A05+ TGCATAGTTAGAGTAGAGTCTGGTTAGCAGAGATTTTTGAATCTGGGGGCTAAGCAGGGC
____________________________________________________________
consensus TGCATAGTTAGAGTAGAGTCTGGTTAGCAGAGATTTTTGAATCTGGGGGCTAAGCAGGGC
. : . : . : . : . : . :
JMSF043L16+ CATTGATTAGAGGAGAGGCGTAATTAGCGTGGGCGT
JMFF034A05+ CATTGATTAGAGGAGAGGCGTAATTAGCGTGGGCGTGGAATGAGATTTTGAGGATAAGGC
____________________________________________________________
consensus CATTGATTAGAGGAGAGGCGTAATTAGCGTGGGCGTGGAATGAGATTTTGAGGATAAGGC