Contig 004580:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031G13Sequence397004580 (2)ref|XP_009595359.1|2e-31PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Nicotiana 563001228 (2)emb|CBI22027.3|5e-85unnamed protein product [Vitis vinifera]
JMFN034F04Sequence583004580 (2)ref|XP_007044098.1|6e-68FtsH extracellular protease family isoform 2, partial [Theobroma cacao] gb|EOX9

Alignment

This contig is upended


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JMFN034F04+                                      CCCGCAACATCATCAAATGTCACACCGGTGTTC
                      ____________________________________________________________
consensus                                        CCCGCAACATCATCAAATGTCACACCGGTGTTC
 
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JMFN034F04+           GGTATCATTTGGAACTTAGCTTTGATTTGGCCAAAGGCCAACGGGAAACCGGGGCCGCCA
                      ____________________________________________________________
consensus             GGTATCATTTGGAACTTAGCTTTGATTTGGCCAAAGGCCAACGGGAAACCGGGGCCGCCA
 
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JMFN034F04+           GGGCCGCCCATTCCTCCAGAAGACCGCCTCGATAATAGGAACAAACCCCCAATCAAGATA
                      ____________________________________________________________
consensus             GGGCCGCCCATTCCTCCAGAAGACCGCCTCGATAATAGGAACAAACCCCCAATCAAGATA
 
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JMFN034F04+           AGCGGGAATGCCAAGTTTCCAATCAAGTTAAACAACAGAGAGCCAGACTCCTCTTGAGCA
                      ____________________________________________________________
consensus             AGCGGGAATGCCAAGTTTCCAATCAAGTTAAACAACAGAGAGCCAGACTCCTCTTGAGCA
 
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JMFN034F04+           TTGTGTGCAGCGAAATCGATATTCTTTTCCCTGAACTTTTGAAGGAGTTCCTGGTTGAGC
                      ____________________________________________________________
consensus             TTGTGTGCAGCGAAATCGATATTCTTTTCCCTGAACTTTTGAAGGAGTTCCTGGTTGAGC
 
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JMFN034F04+           CCGGGTAACTGCACCCGAACTCTCTGAACCCGATTGCCCAACTCTGGAGATATTGCCTCA
                      ____________________________________________________________
consensus             CCGGGTAACTGCACCCGAACTCTCTGAACCCGATTGCCCAACTCTGGAGATATTGCCTCA
 
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JMFN034F04+           ACAATAGCTATGGTTCCATTTTCGAACAAATCTACCTTTTGCACCCTATCCTTATCCAAG
JMFF031G13+                                      AAATCTACCTTTTGCACCCTATCCTTATCCAAG
                      ____________________________________________________________
consensus             ACAATAGCTATGGTTCCATTTTCGAACAAATCTACCTTTTGCACCCTATCCTTATCCAAG
 
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JMFN034F04+           TACTCCAAAAATCGAGAATAAGACATCCTGGAGTTTGAGACCCCTTGTTCCTCCGCATAA
JMFF031G13+           TACTCCAAAAATCGAGAATAAGACATCCTGGAGTTTGAGACCCCTTGTTCCCCCGCATAA
                      ____________________________________________________________
consensus             TACTCCAAAAATCGAGAATAAGACATCCTGGAGTTTGAGACCCCTTGTTCCTCCGCATAA
 
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JMFN034F04+           GCTTTCCCACTACCTAACAATGCAGGNNCAGCAAGACCAGCATTCCCGAGTAATAATTTC
JMFF031G13+           GCTTTCCCNCTACCTAACAANGCAGGTACAGCAAGACCAGCATTCCCGAGTAATAATTTC
                      ____________________________________________________________
consensus             GCTTTCCCACTACCTAACAATGCAGGTACAGCAAGACCAGCATTCCCGAGTAATAATTTC
 
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JMFN034F04+           AAAAAGCCTCTTCTACCCTCACGCGAATTCTGGTCCAGGGACGCCTTTGCAACGACAACT
JMFF031G13+           AAAAAGCCTCTTCTACCCTCACGCGAATTCTGGTCCAGGGACGCCTTTGCAACGACAACT
                      ____________________________________________________________
consensus             AAAAAGCCTCTTCTACCCTCACGCGAATTCTGGTCCAGGGACGCCTTTGCAACGACAACT
 
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JMFN034F04+           TTTGATGTCT                                                  
JMFF031G13+           TTTGATGTCTTGCTACGTGATGGCAAGCGTGAAGCAAATAAAAGGTGCCTTCCATAAATT
                      ____________________________________________________________
consensus             TTTGATGTCTTGCTACGTGATGGCAAGCGTGAAGCAAATAAAAGGTGCCTTCCATAAATT
 
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JMFF031G13+           TCTTTCGATAAACCATTTCCCGCTATGCACACTGATGAAGTTGCCATCTTGGCAAATTCC
                      ____________________________________________________________
consensus             TCTTTCGATAAACCATTTCCCGCTATGCACACTGATGAAGTTGCCATCTTGGCAAATTCC
 
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JMFF031G13+           CAGTAATCTGAAAATCCGGAGAGAGCTGAGGAGAGAGAGAGTGAGATGAAGAAAGGGTTT
                      ____________________________________________________________
consensus             CAGTAATCTGAAAATCCGGAGAGAGCTGAGGAGAGAGAGAGTGAGATGAAGAAAGGGTTT