Contig 004579:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006D24Sequence556004579 (10)ref|XP_009589936.1|1e-95PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A-like [Nico759005852 (11)ref|XP_009781056.1|3e-110PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A-like [Nico
JMFF018C08Sequence573004579 (10)ref|XP_009589936.1|7e-94PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A-like [Nico770005852 (11)ref|XP_009781056.1|3e-109PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A-like [Nico
JMFF022E06Sequence185004579 (10)ref|XP_009589936.1|2e-10PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A-like [Nico730005852 (11)ref|XP_006346729.1|8e-103PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A-like [Sola
JMFF031D09Sequence521004579 (10)ref|XP_009589936.1|9e-75PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A-like [Nico729005852 (11)ref|XP_009781056.1|2e-112PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A-like [Nico
JMFF043M16Sequence619004579 (10)ref|XP_009589936.1|2e-111PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A-like [Nico550005852 (11)ref|XP_004237482.1|3e-38PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Solanum l
JMFF050A23Sequence595004579 (10)ref|XP_009589936.1|1e-93PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A-like [Nico606005852 (11)ref|XP_006346729.1|2e-75PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A-like [Sola
JMFF051J14Sequence577004579 (10)ref|XP_009589936.1|1e-97PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A-like [Nico522005852 (11)ref|XP_004237482.1|1e-37PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Solanum l
JMSF034B15Sequence696004579 (10)ref|XP_010261003.1|2e-120PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A-like [Nelu755005852 (11)ref|XP_009781056.1|3e-113PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A-like [Nico
JMSF048M07Sequence661004579 (10)ref|XP_010261003.1|2e-116PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A-like [Nelu767005852 (11)ref|XP_006346729.1|7e-91PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A-like [Sola
JMSF052G14Sequence706004579 (10)ref|XP_010261003.1|2e-137PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A-like [Nelu959005852 (11)ref|XP_009781056.1|1e-132PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A-like [Nico

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052G14+                                                         ATGTGAGTAATACC
                      ____________________________________________________________
consensus                                                           ATGTGAGTAATACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052G14+           GAATCATTAGTTCATAGTAGATCCGCTTCAACTCCAACAGCGATGGAATATCTGCAGGAG
JMSF034B15+                                                            ATCTGCAGGAG
                      ____________________________________________________________
consensus             GAATCATTAGTTCATAGTAGATCCGCTTCAACTCCAACAGCGATGGAATATCTGCAGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052G14+           GCTCTTCCACTACAGCTTCACCTTCTTTTGGTTTTTTCTTCTCTTTCGAAGTATCAGCCT
JMSF048M07+                 CCACTACAGCTTCACCTTCTTTTGGTTTTTTCTTCTCTTTCGAAGTATCAGCCT
JMFF043M16+                                                          GAAGTATCAGCCT
JMSF034B15+           GCTCTTCCACTACAGCTTCACCTTCTTTTGGTTTTTTCTTCTCTTTCGAAGTATCAGCCT
                      ____________________________________________________________
consensus             GCTCTTCCACTACAGCTTCACCTTCTTTTGGTTTTTTCTTCTCTTTCGAAGTATCAGCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052G14+           CAAAAACTCTAGGATTGATCTTTCGTGAGAGAATTTGTGCCCGTACGTAATCTTGGCGGT
JMSF048M07+           CAAAAACTCTAGGATTGATCTTTCGTGAGAGAATTTGTGCCCGTACGTAATCTTGGCGGT
JMFF043M16+           CAAAAACTCTAGGATTGATCTNTCGTGAGAGAATTTGTGCCCGTACGTAATCTNGGCGGT
JMFF051J14+                                                TGCCCGTACGTAATCTGGCGGGT
JMFF006D24+                                                                     GT
JMSF034B15+           CAAAAACTCTAGGATTGATCTTTCGTGAGAGAATTTGTGCCCGTACGTAATCTNGGCGGT
                      ____________________________________________________________
consensus             CAAAAACTCTAGGATTGATCTTTCGTGAGAGAATTTGTGCCCGTACGTAATCTTGGCGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052G14+           CTAAACATAGACGCACTTGTTCAAGAATGAAAGCAATTTTTTCAGTTTTTGCCATTGCCC
JMSF048M07+           CTAAACATAGACGCACTTGTTCAAGAATGAAAGCAATTTTTTCAGTTTTTGCCATTGCCC
JMFF043M16+           CTAAACATAGACGCACTTGTTCAAGAATGAAAGCAATTTTTTCAGTTTTTGCCATTGCCC
JMFF051J14+           CTAAACATAGACGCACTTGTTCAAGAATGAAAGCAATTTTTTCAGTTTTGNCCATTGCCC
JMFF006D24+           CTAAACATAGACGCACTTGTTCAAGAATGAAAGCAATTTTTTCAGTTTTTGCCATTGCCC
JMSF034B15+           CTAAACATAGACGCACTTGTTCAAGAATGAAAGCAATTTTTTCAGTTTTTGCCATTGCCC
JMFF018C08+             AAACATAGACGCACTTGTTCAAGAATGAAAGCAATTTTTTCAGTTTTTGCCATTGCCC
JMFF050A23+             AAACATAGACGCACTTGTTCAAGAATGAAAGCAATTTNTTCAGTTTTTGCCATTGCCC
                      ____________________________________________________________
consensus             CTAAACATAGACGCACTTGTTCAAGAATGAAAGCAATTTTTTCAGTTTTTGCCATTGCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052G14+           CAAATGTTTCAACCGCAATTTCTTGCATCAAATCAGCAGCGTCAGCTATGAGTCCCTGCT
JMSF048M07+           CAAATGTTTCAACCGCAATTTCTTGCATCAAATCAGCAGCGTCAGCTATGAGTCCCTGCT
JMFF043M16+           CAAATGTTTCAACCGCAATTTCTTGCATCAAATCAGCAGCGTCAGCTATGAGTCCCTGCT
JMFF051J14+           CAAATGTTTCAACCGCAATTTCTTGCATCAAATCAGCAGCGTCAGCTATGAGTCCCTGCT
JMFF006D24+           CAAATGTTTCAACCGCAATTTCTTGCATCAAATCAGCAGCGTCAGCTATGAGTCCCTGCT
JMSF034B15+           CAAATGTTTCAACCGCAATTTCTTGCATCAAATCAGCAGCGTCAGCTATGAGTCCCTGCT
JMFF018C08+           CAAATGTTTCAACCGCAATTTCTTGCATCAAATCAGCAGCGTCAGCTATGAGTCCCTGCT
JMFF050A23+           CAAATGTTTCAACCGCAATTTCTTGCATCAAATCAGCAGCGTCAGCTATGAGTCCCTGCT
JMFF031D09+                              TTCTTGCATCAAATCAGCAGCGTCAGCTATGAGTCCCTGCT
                      ____________________________________________________________
consensus             CAAATGTTTCAACCGCAATTTCTTGCATCAAATCAGCAGCGTCAGCTATGAGTCCCTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052G14+           CTTCTTTTATTTTTGCAAGTTTCTTAATCAAGCGAGCCCTCTCTATCTCAACATATATCT
JMSF048M07+           CTTCTTTTATTTTTGCAAGTTTCTTAATCAAGCGAGCCCTCTCTATCTCAACATATATCT
JMFF043M16+           CTTCTTTTATTTTTGCAAGTTTCTTAATCAAGCGAGCCCTCTCTATCTCAACATATATCT
JMFF051J14+           CTTCTTTTATTTTTGCAAGTTTCTTAATCAAGCGAGCCCTCTCTATCTCAACATATATCT
JMFF006D24+           CTTCTTTTATTTTTGCAAGTTTCTTAATCAAGCGAGCCCTCTCTATCTCAACATATATCT
JMSF034B15+           CTTCTTTTATTTTTGCAAGTTTCTTAATCAAGCGAGCCCTCTCTATCTCAACATATATCT
JMFF018C08+           CTTCTTTTATTTTTGCAAGTTTCTTAATCAAGCGAGCCCTCTCTATCTCAACATATATCT
JMFF050A23+           CTTCTTTTATTTTTGCAAGTTTCTTAATCAAGCGAGCCCTCTCTATCTCAACATATATCT
JMFF031D09+           CTTCTTTTATTTTTGCAAGTTTCTTAATCAAGCGAGCCCTCTCTATCTCAACATATATCT
                      ____________________________________________________________
consensus             CTTCTTTTATTTTTGCAAGTTTCTTAATCAAGCGAGCCCTCTCTATCTCAACATATATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052G14+           TCCCAGCAGACACATTGTTAAGAGTTTTGATAAGTTCAATCTTAGTTTCCAGATCTGGAG
JMSF048M07+           TCCCAGCAGACACATTGTTAAGAGTTTTGATAAGTTCAATCTTAGTTTCCAGATCTGGAG
JMFF043M16+           TCCCAGCAGACACATTGTTAAGAGTTTTGATAAGTTCAATCTTAGTTTCCAGATCTGGAG
JMFF051J14+           TCCCAGCAGACACATTGTTAAGAGTTTTGATAAGTTCAATCTTAGTTTCCAGATCTGGAG
JMFF006D24+           TCCCAGCAGACACATTGTTAAGAGTTTTGATAAGTTCAATCTTAGTTTCCAGATCTGGAG
JMSF034B15+           TCCCAGCAGACACATTGTTAAGAGTTTTGATAAGTTCAATCTTAGTTTCCAGATCTGGAG
JMFF018C08+           TCCCAGCAGACACATTGTTAAGAGTTTTGATAAGTTCAATCTTAGTTTCCAGATCTGGAG
JMFF050A23+           TCCCAGCAGACACATTGTTAAGAGTTTTGATAAGTTCAATCTTAGTTTCCAGATCTGGAG
JMFF031D09+           TCCCAGCAGACACATTGTTAAGAGTTTTGATAAGTTCAATCTTAGTTTCCAGATCTGGAG
                      ____________________________________________________________
consensus             TCCCAGCAGACACATTGTTAAGAGTTTTGATAAGTTCAATCTTAGTTTCCAGATCTGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052G14+           TCTGGTCAATGTATTCCATTGCTTGTCGAACCATGGCTTGTACAGCCTGCTTGAGTTGAC
JMSF048M07+           TCTGGTCAATGTATTCCATTGCTTGTCGAACCATGGCTTGTACAGCCTGCTTGAGTTGAC
JMFF043M16+           TCTGGTCAATGTATTCCATTGCTTGTCGAACCATGGCTTGTACAGCCTGCTTGAGTTGAC
JMFF051J14+           TCTGGTCAATGTATTCCATTGCTTGTCGAACCATGGCTTGTACAGCCTGCTTGAGTTGAC
JMFF006D24+           TCTGGTCAATGTATTCCATTGCTTGTCGAACCATGGCTTGTACAGCCTGCTTGAGTTGAC
JMSF034B15+           TCTGGTCAATGTATTCCATTGCTTGTCGAACCATGGCTTGTACAGCCTGCTTGAGTTGAC
JMFF018C08+           TCTGGTCAATGTATTCCATTGCTTGTCGAACCATGGCTTGTACAGCCTGCTTGAGTTGAC
JMFF050A23+           TCTGGTCAATGTATTCCATTGCTTGTCGAACCATGGCTTGTACAGCCTGCTTGAGTTGAC
JMFF031D09+           TCTGGTCAATGTATTCCATTGCTTGTCGAACCATGGCTTGTACAGCCTGCTTGAGTTGAC
                      ____________________________________________________________
consensus             TCTGGTCAATGTATTCCATTGCTTGTCGAACCATGGCTTGTACAGCCTGCTTGAGTTGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052G14+           CACGACGCTTGGACAAGAGAACAATCTGATCATTGATGGTTTTCCAGGCGCACGCTTCGA
JMSF048M07+           CACGACGCTTGGACAAGAGAACAATCTGATCATTGATGGTTTTCCAGGCGCACGCTTCGA
JMFF043M16+           CACGACGCTTGGACAAGAGAACAATCTGATCATTGATGGTTTTCCAGGCGCACGCTTCGA
JMFF051J14+           CACGACGCTTGGACAAGAGAACAATCTGATCATTGATGGTTTTCCAGGCGCACGCTTCGA
JMFF006D24+           CACGACGCTTGGACAAGAGAACAATCTGATCATTGATGGTTTTCCAGGCGCACGCTTCGA
JMSF034B15+           CACGACGCTTGGACAAGAGAACAATCTGATCATTGATGGTTTTCCAGGCGCACGCTTCGA
JMFF018C08+           CACGACGCTTGGACAAGAGAACAATCTGATCATTGATGGTTTTCCAGGCGCACGCTTCGA
JMFF050A23+           CACGACGCTTGGACAAGAGAACAATCTGTTCATTGATGGTTTTCCAGGCGCACGCTTCGA
JMFF031D09+           CACGACGCTTGGACAAGAGAACAATCTGATCATTGATGGTTTTCCAGGCGCACGCTTCGA
                      ____________________________________________________________
consensus             CACGACGCTTGGACAAGAGAACAATCTGATCATTGATGGTTTTCCAGGCGCACGCTTCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052G14+           AGCAGAGCTGCAGAATTTCGCTAACGGCCTTCCGGGTGCCGGCCACATCGCCGGCTTGCC
JMSF048M07+           AGCAGAGCTGCAGAATTTCGCTAACGGCCTTCCGGGTGCCGGCCACATCGCCGGCTTGCC
JMFF043M16+           AGCAGAGCTGCAGAATTTCGCTAACGGCCTTCCGGGTGCCGGCCACATCGCCGGCTTGCC
JMFF051J14+           AGCAGAGCTGCAGAATTTCGCTAACGGCCTTCCGGGTGCCGGCCACATCGCCGGCTTGCC
JMFF006D24+           AGCAGAGCTGCAGAATTTCGCTAACGGCCTTCCGGGTGCCGGCCACATCGCCGGCTTGCC
JMSF034B15+           AGCAGAGCTGCAGAATTTCGCTAACGGCCTTCCGGGTGCCGGCCACATCGCCGGCTTGCC
JMFF018C08+           AGCAGAGCTGCAGAATTTCGCTAACGGCCTTCCGGGTGCCGGCCACATCGCCGGCTTGCC
JMFF050A23+           AGCAGAGCTGCAGAATTTCGCTAACGGCCTTCCGGGTGCCGGCCACATCGCCGGCTTGCC
JMFF022E06+                                         TCCGGGTGCCGGCCACATCGCCGGCTTGCC
JMFF031D09+           AGCAGAGCTGCAGAATTTCGCTAACGGCCTTCCGGGTGCCGGCCACATCGCCGGCTTGCC
                      ____________________________________________________________
consensus             AGCAGAGCTGCAGAATTTCGCTAACGGCCTTCCGGGTGCCGGCCACATCGCCGGCTTGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052G14+           TCATCTGCTTCTCGACATTCAGCAGGGCCTCTATCTGTGCCTCCAATTTCCCGTCTCCTT
JMSF048M07+           TCATCTGCTTCTCGACATTCAGCAGGGCCTCTATCTGTGCCTCCAATTTCCCGTCTCCTT
JMFF043M16+           TCATCTGCTTCTCGACATTCAGCAGGGCCTCTATCTGTGCCTCCAATTTCCCGTCTCCTT
JMFF051J14+           TCATCTGCTTCTCGACATTCAGCAGGGCCTCTATCTGTGCCTCCAATTTCCCGTCTCCTT
JMFF006D24+           TCATCTGCTTCTCGACATTCAGCAGGGCCTCTATCTGTGCCTCCAATTTCCCGTCTCCTT
JMSF034B15+           TCATCTGCTTCTCGACATTCAGCAGGGCCTCTATCTGTGCCTCCAATTTCCCGTCTCCTT
JMFF018C08+           TCATCTGCTTCTCGACATTCAGCAGGGCCTCTATCTGTGCCTCCAATTTCCCGTCTCCTT
JMFF050A23+           TCATCTGCTTCTCGACATTCAGCAGGGCCTCTATCTGTGCCTCCAATTTCCCGTCTCCTT
JMFF022E06+           TCATCTGCTTCTCGACATTCAGCAGGGCCTCTATCTGTGCCTCCAATTTCCCGTCTCCTT
JMFF031D09+           TCATCTGCTTCTCGACATTCAGCAGGGCCTCTATCTGTGCCTCCAATTTCCCGTCTCCTT
                      ____________________________________________________________
consensus             TCATCTGCTTCTCGACATTCAGCAGGGCCTCTATCTGTGCCTCCAATTTCCCGTCTCCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052G14+           CCATCGCGGATTTGTATCTTGAATTCAAT                               
JMSF048M07+           CCATCGCGGATTTGTATCTTGAATTCAATTCCAGGAAATCTGATTGAGCTCTGAAACCCT
JMFF043M16+           CCATCGCGGATTTGTATCTTGAATTCAATTCCAGGAAATCTGATTGAGCTCTGAAACCCT
JMFF051J14+           CCATCGCGGATTTGTATCTTGAATTCAATTCCAGGAAATCTGATTGAGCTCTGAAACCCT
JMFF006D24+           CCATCGCGGATTTGTATCTTGAATTCAATTCCAGGAAATCTGATTGAGCTCTGAAACCCT
JMSF034B15+           CCATCGCGGATTTGTATCTTGAATTCAATTCCAGGAAATCTGATTGAGCTCTGAAACCCT
JMFF018C08+           CCATCGCGGATTTGTATCTTGAATTCAATTCCAGGAAATCTGATTGAGCTCTGAAACCCT
JMFF050A23+           CCATCGCGGATTTGTATCTTGAATTCAATTCCAGGAAATATGATTGAGCTCTGAAACCCT
JMFF022E06+           CCATCGCGGATTTGTATCTTGAATTCAATTCCAGGAAATCTGATTGAGCTCTGAAACCCT
JMFF031D09+           CCATCGCGGATTTGTATCTTGAATTCAATTCCAGGAAATCTGATTGAGCTCTGAAACCCT
                      ____________________________________________________________
consensus             CCATCGCGGATTTGTATCTTGAATTCAATTCCAGGAAATCTGATTGAGCTCTGAAACCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048M07+           AATTA                                                       
JMFF043M16+           AATTAT                                                      
JMFF051J14+           AATTATAGAAGAGA                                              
JMFF006D24+           AATTATAGAAGAGA                                              
JMSF034B15+           AATTATAGAAGAGAGAGGAGCTGC                                    
JMFF018C08+           AATTATAGAAGAGAGAGGAGCTGCGATTTTATTAT                         
JMFF050A23+           AATTATAGAAGAGAGAGGAGCTGCGATTTTATTATGAGGGTTTTATCGAATGACTTC   
JMFF022E06+           AATTATAGAAGAGAGAGGAGCTGCGATTTTATTAT                         
JMFF031D09+           AATTATAGAAGAGAGAGGAGCTGCGATTTTATTATGAGGGTTTTATCGAATGACTTCAGC
                      ____________________________________________________________
consensus             AATTATAGAAGAGAGAGGAGCTGCGATTTTATTATGAGGGTTTTATCGAATGACTTCAGC